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Volumn 46, Issue 1, 2007, Pages 15-23

High-affinity triplex-forming oligonucleotide target sequences in mammalian genomes

Author keywords

Database; Gene targeting; Genome; Transcription

Indexed keywords

DOUBLE STRANDED DNA; OLIGONUCLEOTIDE; SPACER DNA; TRIPLEX FORMING OLIGONUCLEOTIDE; UNCLASSIFIED DRUG;

EID: 33846211894     PISSN: 08991987     EISSN: 10982744     Source Type: Journal    
DOI: 10.1002/mc.20261     Document Type: Article
Times cited : (58)

References (36)
  • 1
    • 33947470407 scopus 로고
    • Formation of a three-stranded polynucleotide molecule
    • Felsenfeld G, Davies DR, Rich A. Formation of a three-stranded polynucleotide molecule. J Am Chem Soc 1957;79:2023.
    • (1957) J Am Chem Soc , vol.79 , pp. 2023
    • Felsenfeld, G.1    Davies, D.R.2    Rich, A.3
  • 2
    • 0023802737 scopus 로고
    • Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro
    • Cooney M, Czernuszewicz G, Postel EH, Flint SJ, Hogan ME. Site-specific oligonucleotide binding represses transcription of the human c-myc gene in vitro. Science 1988;241:456-459.
    • (1988) Science , vol.241 , pp. 456-459
    • Cooney, M.1    Czernuszewicz, G.2    Postel, E.H.3    Flint, S.J.4    Hogan, M.E.5
  • 3
    • 0025817256 scopus 로고
    • Second structural motif for recognition of DNA by oligonucleotide-directed triple-helix formation
    • Beal PA, Dervan PB. Second structural motif for recognition of DNA by oligonucleotide-directed triple-helix formation. Science 1991;251:1360-1363.
    • (1991) Science , vol.251 , pp. 1360-1363
    • Beal, P.A.1    Dervan, P.B.2
  • 4
    • 0014414243 scopus 로고
    • Specificity of the three-stranded complex formation between double-stranded DNA and single-stranded RNA containing repeating nucleotide sequences
    • Morgan AR, Wells RD. Specificity of the three-stranded complex formation between double-stranded DNA and single-stranded RNA containing repeating nucleotide sequences. J Mol Biol 1968;37:63-80.
    • (1968) J Mol Biol , vol.37 , pp. 63-80
    • Morgan, A.R.1    Wells, R.D.2
  • 5
    • 0024811679 scopus 로고
    • Inhibition of restriction endonuclease cleavage via triple helix formation by homopyrimidine oligonucleotides
    • Francois JC, Saison-Behmoaras T, Thuong NT, Helene C. Inhibition of restriction endonuclease cleavage via triple helix formation by homopyrimidine oligonucleotides. Biochem 1989;28:9617-9619.
    • (1989) Biochem , vol.28 , pp. 9617-9619
    • Francois, J.C.1    Saison-Behmoaras, T.2    Thuong, N.T.3    Helene, C.4
  • 6
    • 0024357372 scopus 로고
    • Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation
    • Maher LJd, Wold B, Dervan PB. Inhibition of DNA binding proteins by oligonucleotide-directed triple helix formation. Science 1989;245:725-730.
    • (1989) Science , vol.245 , pp. 725-730
    • Maher, L.J.1    Wold, B.2    Dervan, P.B.3
  • 7
    • 0025058003 scopus 로고
    • Site-specific inhibition of EcoRI restriction/modification enzymes by a DNA triple helix
    • Hanvey JC, Shimizu M, Wells RD. Site-specific inhibition of EcoRI restriction/modification enzymes by a DNA triple helix. Nucleic Acids Res 1990;18:157-161.
    • (1990) Nucleic Acids Res , vol.18 , pp. 157-161
    • Hanvey, J.C.1    Shimizu, M.2    Wells, R.D.3
  • 8
    • 0028235646 scopus 로고
    • Triplex formation by the human Ha-ras promoter inhibits Sp1 binding and in vitro transcription
    • Mayfield C, Ebbinghaus S, Gee J, et al. Triplex formation by the human Ha-ras promoter inhibits Sp1 binding and in vitro transcription. J Biol Chem 1994;269:18232-18238.
    • (1994) J Biol Chem , vol.269 , pp. 18232-18238
    • Mayfield, C.1    Ebbinghaus, S.2    Gee, J.3
  • 9
    • 0025287409 scopus 로고
    • Inhibition of simian virus 40 DNA replication in CV-1 cells by an oligodeoxynucleotide covalently linked to an intercalating agent
    • Birg F, Praseuth D, Zerial A, et al. Inhibition of simian virus 40 DNA replication in CV-1 cells by an oligodeoxynucleotide covalently linked to an intercalating agent. Nucleic Acids Res 1990;18:2901-2908.
    • (1990) Nucleic Acids Res , vol.18 , pp. 2901-2908
    • Birg, F.1    Praseuth, D.2    Zerial, A.3
  • 10
    • 0028969877 scopus 로고    scopus 로고
    • Volkmann S, Jendis J, Frauendorf A, Moelling K. Inhibition of HIV-1 reverse transcription by triple-helix forming oligonucleotides with viral RNA [published erratum appears in Nucleic Acids Res 1995 Sep 25;23:3804]. Nucleic Acids Res 1995;23:1204-1212.
    • Volkmann S, Jendis J, Frauendorf A, Moelling K. Inhibition of HIV-1 reverse transcription by triple-helix forming oligonucleotides with viral RNA [published erratum appears in Nucleic Acids Res 1995 Sep 25;23:3804]. Nucleic Acids Res 1995;23:1204-1212.
  • 11
    • 0025744428 scopus 로고
    • Evidence that a triplex-forming oligodeoxyribonucleotide binds to the c-myc promoter in HeLa cells, thereby reducing c-myc mRNA levels
    • Postel EH, Flint SJ, Kessler DJ, Hogan ME. Evidence that a triplex-forming oligodeoxyribonucleotide binds to the c-myc promoter in HeLa cells, thereby reducing c-myc mRNA levels. Proc Natl Acad Sci 1991;88:8227-8231.
    • (1991) Proc Natl Acad Sci , vol.88 , pp. 8227-8231
    • Postel, E.H.1    Flint, S.J.2    Kessler, D.J.3    Hogan, M.E.4
  • 12
    • 0027419952 scopus 로고
    • Inhibition of gene expression by triple helix-directed DNA cross-linking at specific sites
    • Grigoriev M, Praseuth D, Guieysse AL, et al. Inhibition of gene expression by triple helix-directed DNA cross-linking at specific sites. Proc Natl Acad Sci 1993;90:3501-3505.
    • (1993) Proc Natl Acad Sci , vol.90 , pp. 3501-3505
    • Grigoriev, M.1    Praseuth, D.2    Guieysse, A.L.3
  • 13
    • 0027317316 scopus 로고
    • In vivo transcription of a progesterone-responsive gene is specifically inhibited by a triplex-forming oligonucleotide
    • Ing N H, Beekman JM, Kessler DJ, et al. In vivo transcription of a progesterone-responsive gene is specifically inhibited by a triplex-forming oligonucleotide. Nucleic Acids Res 1993;21:2789-2796.
    • (1993) Nucleic Acids Res , vol.21 , pp. 2789-2796
    • Ing, N.H.1    Beekman, J.M.2    Kessler, D.J.3
  • 14
    • 0032562127 scopus 로고    scopus 로고
    • A novel triplex-forming oligonucleotide targeted to human cyclin D1 (bd-1, proto-oncogene) promoter inhibits transcription in HeLa cells
    • Kim HG, Miller DM. A novel triplex-forming oligonucleotide targeted to human cyclin D1 (bd-1, proto-oncogene) promoter inhibits transcription in HeLa cells. Biochem 1998;37:2666-2672.
    • (1998) Biochem , vol.37 , pp. 2666-2672
    • Kim, H.G.1    Miller, D.M.2
  • 15
    • 0034635981 scopus 로고    scopus 로고
    • Targeted inhibition of transcription elongation in cells mediated by triplex-forming oligonucleotides
    • Faria M, Wood CD, Perrouault L, et al. Targeted inhibition of transcription elongation in cells mediated by triplex-forming oligonucleotides. Proc Natl Acad Sci 2000;97:3862-3867.
    • (2000) Proc Natl Acad Sci , vol.97 , pp. 3862-3867
    • Faria, M.1    Wood, C.D.2    Perrouault, L.3
  • 16
    • 0023619361 scopus 로고
    • Sequence specific cleavage of double helical DNA by triple helix formation
    • Moser HE, Dervan PB. Sequence specific cleavage of double helical DNA by triple helix formation. Science 1987;238:645-650.
    • (1987) Science , vol.238 , pp. 645-650
    • Moser, H.E.1    Dervan, P.B.2
  • 17
    • 0026115501 scopus 로고
    • Recognition and photo-induced cleavage and cross-linking of nucleic acids by oligonucleotides covalently linked to ellipticine
    • Le Doan T, Perrouault L, Asseline U, et al. Recognition and photo-induced cleavage and cross-linking of nucleic acids by oligonucleotides covalently linked to ellipticine. Anti Res Dev 1991;1:43-54.
    • (1991) Anti Res Dev , vol.1 , pp. 43-54
    • Le Doan, T.1    Perrouault, L.2    Asseline, U.3
  • 18
    • 0026348013 scopus 로고
    • Site-specific cleavage of human chromosome 4 mediated by triple-helix formation
    • Strobel SA, Doucette-Stamm LA, Riba L, Housman DE, Dervan PB. Site-specific cleavage of human chromosome 4 mediated by triple-helix formation. Science 1991;254:1639-1642.
    • (1991) Science , vol.254 , pp. 1639-1642
    • Strobel, S.A.1    Doucette-Stamm, L.A.2    Riba, L.3    Housman, D.E.4    Dervan, P.B.5
  • 19
    • 0029738829 scopus 로고    scopus 로고
    • High-efficiency triple-heux-mediated photo-cross-linking at a targeted site within a selectable mammalian gene
    • Vasquez KM, Wensel TG, Hogan ME, Wilson JH. High-efficiency triple-heux-mediated photo-cross-linking at a targeted site within a selectable mammalian gene. Biochem 1996;35:10712-10719.
    • (1996) Biochem , vol.35 , pp. 10712-10719
    • Vasquez, K.M.1    Wensel, T.G.2    Hogan, M.E.3    Wilson, J.H.4
  • 21
    • 0035947657 scopus 로고    scopus 로고
    • Triplex-induced recombination in human cell-free extracts. Dependence on XPA and HsRad51
    • Datta HJ, Chan PP, Vasquez KM, Gupta RC, Glazer PM. Triplex-induced recombination in human cell-free extracts. Dependence on XPA and HsRad51. J Biol Chem 2001;276:18018-18023.
    • (2001) J Biol Chem , vol.276 , pp. 18018-18023
    • Datta, H.J.1    Chan, P.P.2    Vasquez, K.M.3    Gupta, R.C.4    Glazer, P.M.5
  • 22
    • 0029912788 scopus 로고    scopus 로고
    • Recombination induced by triple helix-targeted DNA damage in mammalian cells
    • Faruqi AF, Seidman MM, Segal DJ, Carroll D, Glazer PM. Recombination induced by triple helix-targeted DNA damage in mammalian cells. Mol Cell Biol 1996;16:6820-6828.
    • (1996) Mol Cell Biol , vol.16 , pp. 6820-6828
    • Faruqi, A.F.1    Seidman, M.M.2    Segal, D.J.3    Carroll, D.4    Glazer, P.M.5
  • 23
    • 2942532389 scopus 로고    scopus 로고
    • Mutation frequencies in murine keratinocytes as a function of carcinogenic status
    • Christensen LA, Conti CJ, Fischer SM, Vasquez KM. Mutation frequencies in murine keratinocytes as a function of carcinogenic status. Mol Carcinog 2004;40:122-133.
    • (2004) Mol Carcinog , vol.40 , pp. 122-133
    • Christensen, L.A.1    Conti, C.J.2    Fischer, S.M.3    Vasquez, K.M.4
  • 24
    • 0028859271 scopus 로고
    • Targeted mutagenesis in mammalian cells mediated by intracellular triple helix formation
    • Wang G, Levy DD, Seidman MM, Glazer PM. Targeted mutagenesis in mammalian cells mediated by intracellular triple helix formation. Mol Cell Biol 1995;15:1759-1768.
    • (1995) Mol Cell Biol , vol.15 , pp. 1759-1768
    • Wang, G.1    Levy, D.D.2    Seidman, M.M.3    Glazer, P.M.4
  • 25
    • 17344367023 scopus 로고    scopus 로고
    • Targeted gene knockout mediated by triple helix forming oligonucleotides
    • Majumdar A, Khorlin A, Dyatkina N, et al. Targeted gene knockout mediated by triple helix forming oligonucleotides. Nat Genet 1998;20:212-214.
    • (1998) Nat Genet , vol.20 , pp. 212-214
    • Majumdar, A.1    Khorlin, A.2    Dyatkina, N.3
  • 26
    • 0034724438 scopus 로고    scopus 로고
    • Unambiguous demonstration of triple-helix-directed gene modification
    • Barre FX, Ait-Si-Ali S, Giovannangeli C, et al. Unambiguous demonstration of triple-helix-directed gene modification. Proc Natl Acad Sci 2000;97:3084-3088.
    • (2000) Proc Natl Acad Sci , vol.97 , pp. 3084-3088
    • Barre, F.X.1    Ait-Si-Ali, S.2    Giovannangeli, C.3
  • 27
    • 0033557144 scopus 로고    scopus 로고
    • Chromosomal mutations induced by triplex-forming oligonucleotides in mammalian cells
    • Vasquez KM, Wang G, Havre PA, Glazer PM. Chromosomal mutations induced by triplex-forming oligonucleotides in mammalian cells. Nucleic Acids Res 1999;27:1176-1181.
    • (1999) Nucleic Acids Res , vol.27 , pp. 1176-1181
    • Vasquez, K.M.1    Wang, G.2    Havre, P.A.3    Glazer, P.M.4
  • 28
    • 0033766239 scopus 로고    scopus 로고
    • Specific mutations induced by triplex-forming oligonucleotides in mice
    • Vasquez KM, Narayanan L, Glazer PM. Specific mutations induced by triplex-forming oligonucleotides in mice. Science 2000;290:530-533.
    • (2000) Science , vol.290 , pp. 530-533
    • Vasquez, K.M.1    Narayanan, L.2    Glazer, P.M.3
  • 29
    • 0031893854 scopus 로고    scopus 로고
    • Triplex-directed modification of genes and gene activity
    • Vasquez KM, Wilson JH. Triplex-directed modification of genes and gene activity. Trends Biochem Sci 1998;23:4-9.
    • (1998) Trends Biochem Sci , vol.23 , pp. 4-9
    • Vasquez, K.M.1    Wilson, J.H.2
  • 30
    • 10044225983 scopus 로고    scopus 로고
    • Triplex-forming oligonucleotides- sequence-specific DNA ligands as tools for gene inhibition and for modulation of DNA-associated functions
    • Besch R, Giovannangeli C, Degitz K. Triplex-forming oligonucleotides- sequence-specific DNA ligands as tools for gene inhibition and for modulation of DNA-associated functions. Curr Drug Targets 2004;5:691-703.
    • (2004) Curr Drug Targets , vol.5 , pp. 691-703
    • Besch, R.1    Giovannangeli, C.2    Degitz, K.3
  • 31
    • 0034084567 scopus 로고    scopus 로고
    • Targeting DNA with triplexes
    • Fox KR. Targeting DNA with triplexes. Curr Med Chem 2000;7:17-37.
    • (2000) Curr Med Chem , vol.7 , pp. 17-37
    • Fox, K.R.1
  • 32
    • 0028931130 scopus 로고
    • An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes
    • Behe MJ. An overabundance of long oligopurine tracts occurs in the genome of simple and complex eukaryotes. Nucleic Acids Res 1995;23:689-695.
    • (1995) Nucleic Acids Res , vol.23 , pp. 689-695
    • Behe, M.J.1
  • 34
    • 1242320280 scopus 로고    scopus 로고
    • Triplex-forming oligonucleotide target sequences in the human genome
    • Goni JR, de la Cruz X, Orozco M. Triplex-forming oligonucleotide target sequences in the human genome. Nucleic Acids Res 2004;32:354-360.
    • (2004) Nucleic Acids Res , vol.32 , pp. 354-360
    • Goni, J.R.1    de la Cruz, X.2    Orozco, M.3
  • 36
    • 33745213771 scopus 로고    scopus 로고
    • A Web-based search engine for triplex-forming oligonucleotide target sequences
    • Gaddis SS, Wu Q, Thames HD, et al. A Web-based search engine for triplex-forming oligonucleotide target sequences. Oligonucleotides 2006;16:196-201.
    • (2006) Oligonucleotides , vol.16 , pp. 196-201
    • Gaddis, S.S.1    Wu, Q.2    Thames, H.D.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.