-
1
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
The Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408, 796-815
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
2
-
-
84862234802
-
The Arabidopsis information resource (TAIR): Improved gene annotation and new tools
-
Lamesch, P.; Berardini, T.Z.; Li, D.; Swarbreck, D.; Wilks, C.; Sasidharan, R.; Muller, R.; Dreher, K.; Alexander, D.L.; Garcia-Hernandez, M.; et al. The Arabidopsis information resource (TAIR): Improved gene annotation and new tools. Nucleic Acids Res. 2011, 40, D1202-D1210
-
(2011)
Nucleic Acids Res
, vol.40
, pp. D1202-D1210
-
-
Lamesch, P.1
Berardini, T.Z.2
Li, D.3
Swarbreck, D.4
Wilks, C.5
Sasidharan, R.6
Muller, R.7
Dreher, K.8
Alexander, D.L.9
Garcia-Hernandez, M.10
-
3
-
-
84860567710
-
Genome-wide patterns of Arabidopsis gene expression in nature
-
Richards, C.L.; Rosas, U.; Banta, J.; Bhambhra, N.; Purugganan, M.D. Genome-wide patterns of Arabidopsis gene expression in nature. PLoS Genet. 2012, 8, e1002662
-
(2012)
PLoS Genet
, vol.8
-
-
Richards, C.L.1
Rosas, U.2
Banta, J.3
Bhambhra, N.4
Purugganan, M.D.5
-
4
-
-
84876169511
-
Genetical genomics reveals large scale genotype-by-environment interactions in Arabidopsis thaliana
-
Snoek, L.B.; Terpstra, I.R.; Dekter, R.; van den Ackerveken, G.; Peeters, A.J. Genetical genomics reveals large scale genotype-by-environment interactions in Arabidopsis thaliana. Front. Genet. 2013, 3, e317
-
(2013)
Front. Genet
, vol.3
-
-
Snoek, L.B.1
Terpstra, I.R.2
Dekter, R.3
van den Ackerveken, G.4
Peeters, A.J.5
-
5
-
-
84873028352
-
The green proteome: Challenges in plant proteomics
-
Heazlewood, J.L. The green proteome: Challenges in plant proteomics. Front. Plant Sci. 2011, 2, e6
-
(2011)
Front. Plant Sci
, vol.2
-
-
Heazlewood, J.L.1
-
6
-
-
78650979357
-
MASCP Gator: An aggregation portal for the visualization of Arabidopsis proteomics data
-
Joshi, H.J.; Hirsch-Hoffmann, M.; Baerenfaller, K.; Gruissem, W.; Baginsky, S.; Schmidt, R.; Schulze, W.X.; Sun, Q.; van Wijk, K.J.; Egelhofer, V.; et al. MASCP Gator: An aggregation portal for the visualization of Arabidopsis proteomics data. Plant Physiol. 2011, 155, 259-270
-
(2011)
Plant Physiol
, vol.155
, pp. 259-270
-
-
Joshi, H.J.1
Hirsch-Hoffmann, M.2
Baerenfaller, K.3
Gruissem, W.4
Baginsky, S.5
Schmidt, R.6
Schulze, W.X.7
Sun, Q.8
van Wijk, K.J.9
Egelhofer, V.10
-
7
-
-
84860816860
-
The protein expression landscape of the Arabidopsis root
-
Petricka, J.J.; Schauer, M.A.; Megraw, M.; Breakfield, N.W.; Thompson, J.W.; Georgiev, S.; Soderblom, E.J.; Ohler, U.; Moseley, M.A.; Grossniklaus, U.; et al. The protein expression landscape of the Arabidopsis root. Proc. Natl. Acad. Sci. USA 2012, 109, 6811-6818
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 6811-6818
-
-
Petricka, J.J.1
Schauer, M.A.2
Megraw, M.3
Breakfield, N.W.4
Thompson, J.W.5
Georgiev, S.6
Soderblom, E.J.7
Ohler, U.8
Moseley, M.A.9
Grossniklaus, U.10
-
8
-
-
84874251578
-
PRIMe Update: Innovative content for plant metabolomics and integration of gene expression and metabolite accumulation
-
Sakurai, T.; Yamada, Y.; Sawada, Y.; Matsuda, F.; Akiyama, K.; Shinozaki, K.; Hirai, M.Y.; Saito, K. PRIMe Update: Innovative content for plant metabolomics and integration of gene expression and metabolite accumulation. Plant Cell Physiol. 2013, 54, e5
-
(2013)
Plant Cell Physiol
, vol.54
-
-
Sakurai, T.1
Yamada, Y.2
Sawada, Y.3
Matsuda, F.4
Akiyama, K.5
Shinozaki, K.6
Hirai, M.Y.7
Saito, K.8
-
9
-
-
83255190103
-
Shotguns in the front line: Phosphoproteomics in plants
-
Nakagami, H.; Sugiyama, N.; Ishihama, Y.; Shirasu, K. Shotguns in the front line: Phosphoproteomics in plants. Plant Cell Physiol. 2012, 53, 118-124
-
(2012)
Plant Cell Physiol
, vol.53
, pp. 118-124
-
-
Nakagami, H.1
Sugiyama, N.2
Ishihama, Y.3
Shirasu, K.4
-
10
-
-
84873990418
-
Integration of phosphoproteomic, chemical, and biological strategies for the functional analysis of targeted protein phosphorylation
-
Guo, M.; Huang, B.X. Integration of phosphoproteomic, chemical, and biological strategies for the functional analysis of targeted protein phosphorylation. Proteomics 2013, 13, 424-437
-
(2013)
Proteomics
, vol.13
, pp. 424-437
-
-
Guo, M.1
Huang, B.X.2
-
11
-
-
0036806311
-
Evolution of protein kinase signaling from yeast to man
-
Manning, G.; Plowman, G.D.; Hunter, T.; Sudarsanam, S. Evolution of protein kinase signaling from yeast to man. Trends Biochem. Sci. 2002, 27, 514-520
-
(2002)
Trends Biochem. Sci
, vol.27
, pp. 514-520
-
-
Manning, G.1
Plowman, G.D.2
Hunter, T.3
Sudarsanam, S.4
-
12
-
-
0042510537
-
Systematic trans-genomic comparison of protein kinases between Arabidopsis and Saccharomyces cerevisiae
-
Wang, D.; Harper, J.F.; Gribskov, M. Systematic trans-genomic comparison of protein kinases between Arabidopsis and Saccharomyces cerevisiae. Plant Physiol. 2003, 132, 2152-2165
-
(2003)
Plant Physiol
, vol.132
, pp. 2152-2165
-
-
Wang, D.1
Harper, J.F.2
Gribskov, M.3
-
13
-
-
33645096214
-
Phosphoproteomics as a tool to unravel plant regulatory mechanisms
-
De la Fuente van Bentem, S.; Roitinger, E.; Anrather, D.; Csaszar, E.; Hirt, H. Phosphoproteomics as a tool to unravel plant regulatory mechanisms. Physiol. Plant. 2006, 126, 110-119
-
(2006)
Physiol. Plant
, vol.126
, pp. 110-119
-
-
De la Fuente van Bentem, S.1
Roitinger, E.2
Anrather, D.3
Csaszar, E.4
Hirt, H.5
-
14
-
-
0034614490
-
Signaling-2000 and beyond
-
Hunter, T. Signaling-2000 and beyond. Cell 2000, 100, 113-127
-
(2000)
Cell
, vol.100
, pp. 113-127
-
-
Hunter, T.1
-
15
-
-
0028985079
-
MAP kinase pathways in yeast: For mating and more
-
Herskowitz, I. MAP kinase pathways in yeast: For mating and more. Cell 1995, 80, 187-197
-
(1995)
Cell
, vol.80
, pp. 187-197
-
-
Herskowitz, I.1
-
16
-
-
33646476164
-
Ancient signals: Comparative genomics of plant MAPK and MAPKK gene families
-
Hamel, L.P.; Nicole, M.C.; Sritubtim, S.; Morency, M.J.; Ellis, M.; Ehlting, J.; Beaudoin, N.; Barbazuk, B.; Klessig, D.; Lee, J.; et al. Ancient signals: Comparative genomics of plant MAPK and MAPKK gene families. Trends Plant Sci. 2006, 11, 192-198
-
(2006)
Trends Plant Sci
, vol.11
, pp. 192-198
-
-
Hamel, L.P.1
Nicole, M.C.2
Sritubtim, S.3
Morency, M.J.4
Ellis, M.5
Ehlting, J.6
Beaudoin, N.7
Barbazuk, B.8
Klessig, D.9
Lee, J.10
-
17
-
-
84879705769
-
MAPK cascades in plant disease resistance signaling
-
Meng, X.; Zhang, S. MAPK cascades in plant disease resistance signaling. Annu. Rev. Phytopathol. 2013, 51, 245-266
-
(2013)
Annu. Rev. Phytopathol
, vol.51
, pp. 245-266
-
-
Meng, X.1
Zhang, S.2
-
18
-
-
84882954283
-
Finding the same needles in the haystack? A comparison of phosphotyrosine peptides enriched by immuno-affinity precipitation and metal-based affinity chromatography
-
Di Palma, S.; Zoumaro-Djayoon, A.; Peng, M.; Post, H.; Preisinger, C.; Munoz, J.; Heck, A.J. Finding the same needles in the haystack? A comparison of phosphotyrosine peptides enriched by immuno-affinity precipitation and metal-based affinity chromatography. J. Proteomics 2013, 91, 331-337
-
(2013)
J. Proteomics
, vol.91
, pp. 331-337
-
-
Di Palma, S.1
Zoumaro-Djayoon, A.2
Peng, M.3
Post, H.4
Preisinger, C.5
Munoz, J.6
Heck, A.J.7
-
19
-
-
84883780981
-
Combination of multistep IMAC enrichment with high-pH reverse phase separation for in-depth phosphoproteomic profiling
-
Yue, X.S.; Hummon, A.B. Combination of multistep IMAC enrichment with high-pH reverse phase separation for in-depth phosphoproteomic profiling. J. Proteome Res. 2013, 12, 4176-4186
-
(2013)
J. Proteome Res
, vol.12
, pp. 4176-4186
-
-
Yue, X.S.1
Hummon, A.B.2
-
20
-
-
28444487185
-
Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC)
-
Wolschin, F.; Wienkoop, S.; Weckwerth, W. Enrichment of phosphorylated proteins and peptides from complex mixtures using metal oxide/hydroxide affinity chromatography (MOAC). Proteomics 2005, 5, 4389-4397
-
(2005)
Proteomics
, vol.5
, pp. 4389-4397
-
-
Wolschin, F.1
Wienkoop, S.2
Weckwerth, W.3
-
21
-
-
84876705178
-
Highly selective recovery of phosphopeptides using trypsin-assisted digestion of precipitated lanthanide-phosphoprotein complexes
-
Güzel, Y.; Rainer, M.; Mirza, M.R.; Messner, C.B.; Bonn, G.K. Highly selective recovery of phosphopeptides using trypsin-assisted digestion of precipitated lanthanide-phosphoprotein complexes. Analyst 2013, 138, 2897-2905
-
(2013)
Analyst
, vol.138
, pp. 2897-2905
-
-
Güzel, Y.1
Rainer, M.2
Mirza, M.R.3
Messner, C.B.4
Bonn, G.K.5
-
22
-
-
84867036962
-
Enrichment techniques employed in phosphoproteomics
-
Fila, J.; Honys, D. Enrichment techniques employed in phosphoproteomics. Amino Acids 2011, 43, 1025-1047
-
(2011)
Amino Acids
, vol.43
, pp. 1025-1047
-
-
Fila, J.1
Honys, D.2
-
23
-
-
37449010062
-
Cross species applicability of abundant protein depletion columns for ribulose-1, 5-bisphosphate carboxylase/ oxygenase
-
Cellar, N.A.; Kuppannan, K.; Langhorst, M.L.; Ni, W.; Xu, P.; Young, S.A. Cross species applicability of abundant protein depletion columns for ribulose-1, 5-bisphosphate carboxylase/ oxygenase. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. 2008, 861, 29-39
-
(2008)
J. Chromatogr. B Analyt. Technol. Biomed. Life Sci
, vol.861
, pp. 29-39
-
-
Cellar, N.A.1
Kuppannan, K.2
Langhorst, M.L.3
Ni, W.4
Xu, P.5
Young, S.A.6
-
24
-
-
33749529109
-
Polyethylene glycol fractionation improved detection of low-abundant proteins by two-dimensional electrophoresis analysis of plant proteome
-
Xi, J.; Wang, X.; Li, S.; Zhou, X.; Yue, L.; Fan, J.; Hao, D. Polyethylene glycol fractionation improved detection of low-abundant proteins by two-dimensional electrophoresis analysis of plant proteome. Phytochemistry 2006, 67, 2341-2348
-
(2006)
Phytochemistry
, vol.67
, pp. 2341-2348
-
-
Xi, J.1
Wang, X.2
Li, S.3
Zhou, X.4
Yue, L.5
Fan, J.6
Hao, D.7
-
25
-
-
84855544323
-
Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry
-
Aryal, U.K.; Krochko, J.E.; Ross, A.R. Identification of phosphoproteins in Arabidopsis thaliana leaves using polyethylene glycol fractionation, immobilized metal-ion affinity chromatography, two-dimensional gel electrophoresis and mass spectrometry. J. Proteome Res. 2011, 11, 425-437
-
(2011)
J. Proteome Res
, vol.11
, pp. 425-437
-
-
Aryal, U.K.1
Krochko, J.E.2
Ross, A.R.3
-
26
-
-
59449111124
-
Combining subproteome enrichment and Rubisco depletion enables identification of low abundance proteins differentially regulated during plant defense
-
Widjaja, I.; Naumann, K.; Roth, U.; Wolf, N.; Mackey, D.; Dangl, J.L.; Scheel, D.; Lee, J. Combining subproteome enrichment and Rubisco depletion enables identification of low abundance proteins differentially regulated during plant defense. Proteomics 2009, 9, 138-147
-
(2009)
Proteomics
, vol.9
, pp. 138-147
-
-
Widjaja, I.1
Naumann, K.2
Roth, U.3
Wolf, N.4
Mackey, D.5
Dangl, J.L.6
Scheel, D.7
Lee, J.8
-
27
-
-
85054249243
-
-
Diplom (Master) Thesis (in German), Martin-Luther-Universität Halle-Wittenberg, Halle/Saale, Germany
-
Lassowskat, I. Optimisation, Extension and application of metal-oxide affinity chromatography for Proteome analysis of Arabidopsis thaliana. Diplom (Master) Thesis (in German), Martin-Luther-Universität Halle-Wittenberg, Halle/Saale, Germany, 2008
-
(2008)
Optimisation, Extension and application of metal-oxide affinity chromatography for Proteome analysis of Arabidopsis thaliana
-
-
Lassowskat, I.1
-
28
-
-
0014949207
-
Cleavage of structural proteins during the assembly of the head of bacteriophage T4
-
Laemmli, U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 1970, 227, 680-685
-
(1970)
Nature
, vol.227
, pp. 680-685
-
-
Laemmli, U.K.1
-
29
-
-
29544453143
-
Development of a simplified, economical polyacrylamide gel staining protocol for phosphoproteins
-
Agrawal, G.K.; Thelen, J.J. Development of a simplified, economical polyacrylamide gel staining protocol for phosphoproteins. Proteomics 2005, 5, 4684-4688
-
(2005)
Proteomics
, vol.5
, pp. 4684-4688
-
-
Agrawal, G.K.1
Thelen, J.J.2
-
30
-
-
84866459077
-
DanteR: An extensible R-based tool for quantitative analysis of-omics data
-
Taverner, T.; Karpievitch, Y.V.; Polpitiya, A.D.; Brown, J.N.; Dabney, A.R.; Anderson, G.A.; Smith, R.D. DanteR: An extensible R-based tool for quantitative analysis of-omics data. Bioinformatics 2012, 28, 2404-2406
-
(2012)
Bioinformatics
, vol.28
, pp. 2404-2406
-
-
Taverner, T.1
Karpievitch, Y.V.2
Polpitiya, A.D.3
Brown, J.N.4
Dabney, A.R.5
Anderson, G.A.6
Smith, R.D.7
-
31
-
-
84871345497
-
-
(accessed on 1 February 2013)
-
The Arabidopsis information resource. Available online: http://arabidopsis.org/tools/bulk/go/index.jsp (accessed on 1 February 2013)
-
The Arabidopsis information resource
-
-
-
32
-
-
84874762979
-
The PRoteomics IDEntifications (PRIDE) database and associated tools: Status in 2013
-
Vizcaino, J.A.; Cote, R.G.; Csordas, A.; Dianes, J.A.; Fabregat, A.; Foster, J.M.; Griss, J.; Alpi, E.; Birim, M.; Contell, J.; et al. The PRoteomics IDEntifications (PRIDE) database and associated tools: Status in 2013. Nucleic Acids Res. 2013, 41, D1063-D1069
-
(2013)
Nucleic Acids Res
, vol.41
, pp. D1063-D1069
-
-
Vizcaino, J.A.1
Cote, R.G.2
Csordas, A.3
Dianes, J.A.4
Fabregat, A.5
Foster, J.M.6
Griss, J.7
Alpi, E.8
Birim, M.9
Contell, J.10
-
33
-
-
10644230916
-
Current two-dimensional electrophoresis technology for proteomics
-
Görg, A.; Weiss, W.; Dunn, M.J. Current two-dimensional electrophoresis technology for proteomics. Proteomics 2004, 4, 3665-3685
-
(2004)
Proteomics
, vol.4
, pp. 3665-3685
-
-
Görg, A.1
Weiss, W.2
Dunn, M.J.3
-
34
-
-
4344669431
-
Protein structure, stability and solubility in water and other solvents
-
Pace, C.N.; Trevino, S.; Prabhakaran, E.; Scholtz, J.M. Protein structure, stability and solubility in water and other solvents. Philos. Trans. R Soc. Lond. B Biol. Sci. 2004, 359, 1225-1235
-
(2004)
Philos. Trans. R Soc. Lond. B Biol. Sci
, vol.359
, pp. 1225-1235
-
-
Pace, C.N.1
Trevino, S.2
Prabhakaran, E.3
Scholtz, J.M.4
-
35
-
-
0035258256
-
Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity chromatography with off-line mass spectrometry analysis
-
Stensballe, A.; Andersen, S.; Jensen, O.N. Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity chromatography with off-line mass spectrometry analysis. Proteomics 2001, 1, 207-222
-
(2001)
Proteomics
, vol.1
, pp. 207-222
-
-
Stensballe, A.1
Andersen, S.2
Jensen, O.N.3
-
36
-
-
58149185117
-
P3DB: A plant protein phosphorylation database
-
Gao, J.; Agrawal, G.K.; Thelen, J.J.; Xu, D. P3DB: A plant protein phosphorylation database. Nucleic Acids Res. 2009, 37, D960-D962
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D960-D962
-
-
Gao, J.1
Agrawal, G.K.2
Thelen, J.J.3
Xu, D.4
-
37
-
-
84876472005
-
P(3)DB: An integrated database for plant protein phosphorylation
-
Yao, Q.; Bollinger, C.; Gao, J.; Xu, D.; Thelen, J.J. P(3)DB: An integrated database for plant protein phosphorylation. Front. Plant Sci. 2012, 3, e206
-
(2012)
Front. Plant Sci
, vol.3
-
-
Yao, Q.1
Bollinger, C.2
Gao, J.3
Xu, D.4
Thelen, J.J.5
-
38
-
-
75549090366
-
PhosPhAt: The Arabidopsis thaliana phosphorylation site database
-
Durek, P.; Schmidt, R.; Heazlewood, J.L.; Jones, A.; MacLean, D.; Nagel, A.; Kersten, B.; Schulze, W.X. PhosPhAt: The Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res. 2009, 38, D828-D834
-
(2009)
An update. Nucleic Acids Res
, vol.38
, pp. D828-D834
-
-
Durek, P.1
Schmidt, R.2
Heazlewood, J.L.3
Jones, A.4
MacLean, D.5
Nagel, A.6
Kersten, B.7
Schulze, W.X.8
-
39
-
-
38549127781
-
PhosPhAt: A database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor
-
Heazlewood, J.L.; Durek, P.; Hummel, J.; Selbig, J.; Weckwerth, W.; Walther, D.; Schulze, W.X. PhosPhAt: A database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res. 2008, 36, D1015-D1021
-
(2008)
Nucleic Acids Res
, vol.36
, pp. D1015-D1021
-
-
Heazlewood, J.L.1
Durek, P.2
Hummel, J.3
Selbig, J.4
Weckwerth, W.5
Walther, D.6
Schulze, W.X.7
-
40
-
-
67649213067
-
Phosphopeptide fragmentation and analysis by mass spectrometry
-
Boersema, P.J.; Mohammed, S.; Heck, A.J. Phosphopeptide fragmentation and analysis by mass spectrometry. J. Mass Spectrom. 2009, 44, 861-878
-
(2009)
J. Mass Spectrom
, vol.44
, pp. 861-878
-
-
Boersema, P.J.1
Mohammed, S.2
Heck, A.J.3
-
41
-
-
65349125322
-
Enrichment and separation of mono-and multiply phosphorylated peptides using sequential elution from IMAC prior to mass spectrometric analysis
-
Thingholm, T.E.; Jensen, O.N.; Larsen, M.R. Enrichment and separation of mono-and multiply phosphorylated peptides using sequential elution from IMAC prior to mass spectrometric analysis. Methods Mol. Biol. 2009, 527, 67-78
-
(2009)
Methods Mol. Biol
, vol.527
, pp. 67-78
-
-
Thingholm, T.E.1
Jensen, O.N.2
Larsen, M.R.3
|