-
1
-
-
34547110110
-
Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis
-
Benschop, J. J., Mohammed, S., O'Flaherty, M., Heck, A. J., Slijper, M., and Menke, F. L. (2007). Quantitative phosphoproteomics of early elicitor signaling in Arabidopsis. Mol. Cell. Proteomics 6, 1198-1214.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 1198-1214
-
-
Benschop, J.J.1
Mohammed, S.2
O'Flaherty, M.3
Heck, A.J.4
Slijper, M.5
Menke, F.L.6
-
2
-
-
79151477207
-
Large-scale analysis of phosphorylated proteins in maize leaf
-
Bi, Y. D., Wang, H. X., Lu, T. C., Li, X. H., Shen, Z., Chen, Y. B., and Wang, B. C. (2011). Large-scale analysis of phosphorylated proteins in maize leaf. Planta 233, 383-392.
-
(2011)
Planta
, vol.233
, pp. 383-392
-
-
Bi, Y.D.1
Wang, H.X.2
Lu, T.C.3
Li, X.H.4
Shen, Z.5
Chen, Y.B.6
Wang, B.C.7
-
3
-
-
57449105428
-
PhosphoPep-a database of protein phosphorylation sites in model organisms
-
Bodenmiller, B., Campbell, D., Gerrits, B., Lam, H., Jovanovic, M., Picotti, P., Schlapbach, R., and Aebersold, R. (2008). PhosphoPep-a database of protein phosphorylation sites in model organisms. Nat. Biotechnol. 26, 1339-1340.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1339-1340
-
-
Bodenmiller, B.1
Campbell, D.2
Gerrits, B.3
Lam, H.4
Jovanovic, M.5
Picotti, P.6
Schlapbach, R.7
Aebersold, R.8
-
4
-
-
77954297255
-
Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment
-
Chen, Y., Hoehenwarter, W., and Weckwerth, W. (2010). Comparative analysis of phytohormone-responsive phosphoproteins in Arabidopsis thaliana using TiO2-phosphopeptide enrichment and mass accuracy precursor alignment. Plant J. 63, 1-17.
-
(2010)
Plant J.
, vol.63
, pp. 1-17
-
-
Chen, Y.1
Hoehenwarter, W.2
Weckwerth, W.3
-
5
-
-
49849088762
-
Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis
-
de la Fuente van Bentem, S., Anrather, D., Dohnal, I., Roitinger, E., Csaszar, E., Joore, J., Buijnink, J., Carreri, A., Forzani, C., Lorkovic, Z. J., Barta, A., Lecourieux, D., Verhounig, A., Jonak, C., and Hirt, H. (2008). Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. J. Proteome Res. 7, 2458-2470.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 2458-2470
-
-
de la Fuente van Bentem, S.1
Anrather, D.2
Dohnal, I.3
Roitinger, E.4
Csaszar, E.5
Joore, J.6
Buijnink, J.7
Carreri, A.8
Forzani, C.9
Lorkovic, Z.J.10
Barta, A.11
Lecourieux, D.12
Verhounig, A.13
Jonak, C.14
Hirt, H.15
-
6
-
-
38549092088
-
Phospho. ELM: A database of phosphorylation sites-update 2008
-
Diella, F., Gould, C. M., Chica, C., Via, A., and Gibson, T. J. (2008). Phospho. ELM: a database of phosphorylation sites-update 2008. Nucleic Acids Res. 36, D240-D244.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Diella, F.1
Gould, C.M.2
Chica, C.3
Via, A.4
Gibson, T.J.5
-
7
-
-
78651320816
-
Phospho. ELM: A database of phosphorylation sites-update 2011
-
Dinkel, H., Chica, C., Via, A., Gould, C. M., Jensen, L. J., Gibson, T. J., and Diella, F. (2011). Phospho. ELM: a database of phosphorylation sites-update 2011. Nucleic Acids Res. 39, D261-D267.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Dinkel, H.1
Chica, C.2
Via, A.3
Gould, C.M.4
Jensen, L.J.5
Gibson, T.J.6
Diella, F.7
-
8
-
-
75549090366
-
PhosPhAt: The Arabidopsis thaliana phosphorylation site database. An update
-
Durek, P., Schmidt, R., Heazlewood, J. L., Jones, A., Maclean, D., Nagel, A., Kersten, B., and Schulze, W. X. (2010). PhosPhAt: the Arabidopsis thaliana phosphorylation site database. An update. Nucleic Acids Res 38, D828-D834.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Durek, P.1
Schmidt, R.2
Heazlewood, J.L.3
Jones, A.4
McLean, D.5
Nagel, A.6
Kersten, B.7
Schulze, W.X.8
-
9
-
-
84859164078
-
Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings
-
Engelsberger, W. R., and Schulze, W. X. (2012). Nitrate and ammonium lead to distinct global dynamic phosphorylation patterns when resupplied to nitrogen-starved Arabidopsis seedlings. Plant J. 69, 978-995.
-
(2012)
Plant J.
, vol.69
, pp. 978-995
-
-
Engelsberger, W.R.1
Schulze, W.X.2
-
10
-
-
2942557190
-
Annotation of post-translational modifications in the Swiss-Prot knowledge base
-
Farriol-Mathis, N., Garavelli, J. S., Boeckmann, B., Duvaud, S., Gasteiger, E., Gateau, A., Veuthey, A. L., and Bairoch, A. (2004). Annotation of post-translational modifications in the Swiss-Prot knowledge base. Proteomics 4, 1537-1550.
-
(2004)
Proteomics
, vol.4
, pp. 1537-1550
-
-
Farriol-Mathis, N.1
Garavelli, J.S.2
Boeckmann, B.3
Duvaud, S.4
Gasteiger, E.5
Gateau, A.6
Veuthey, A.L.7
Bairoch, A.8
-
11
-
-
0036198435
-
Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae
-
Ficarro, S. B., Mccleland, M. L., Stukenberg, P. T., Burke, D. J., Ross, M. M., Shabanowitz, J., Hunt, D. F., and White, F. M. (2002). Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae. Nat. Biotechnol. 20, 301-305.
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 301-305
-
-
Ficarro, S.B.1
McCleland, M.L.2
Stukenberg, P.T.3
Burke, D.J.4
Ross, M.M.5
Shabanowitz, J.6
Hunt, D.F.7
White, F.M.8
-
12
-
-
58149185117
-
P3DB: A plant protein phosphorylation database
-
Gao, J., Agrawal, G. K., Thelen, J. J., and Xu, D. (2009). P3DB: a plant protein phosphorylation database. Nucleic Acids Res. 37, D960-D962.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Gao, J.1
Agrawal, G.K.2
Thelen, J.J.3
Xu, D.4
-
13
-
-
78650153738
-
Musite, a tool for global prediction of general and kinase-specific phosphorylation sites
-
Gao, J., Thelen, J. J., Dunker, A. K., and Xu, D. (2010). Musite, a tool for global prediction of general and kinase-specific phosphorylation sites. Mol. Cell. Proteomics 9, 2586-2600.
-
(2010)
Mol. Cell. Proteomics
, vol.9
, pp. 2586-2600
-
-
Gao, J.1
Thelen, J.J.2
Dunker, A.K.3
Xu, D.4
-
14
-
-
78651277460
-
PHOSIDA 2011: The posttranslational modification database
-
Gnad, F., Gunawardena, J., and Mann, M. (2011). PHOSIDA 2011: the posttranslational modification database. Nucleic Acids Res. 39, D253-D260.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Gnad, F.1
Gunawardena, J.2
Mann, M.3
-
15
-
-
73249138597
-
Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes
-
Grimsrud, P. A., Den Os, D., Wenger, C. D., Swaney, D. L., Schwartz, D., Sussman, M. R., Ane, J. M., and Coon, J. J. (2010). Large-scale phosphoprotein analysis in Medicago truncatula roots provides insight into in vivo kinase activity in legumes. Plant Physiol. 152, 19-28.
-
(2010)
Plant Physiol.
, vol.152
, pp. 19-28
-
-
Grimsrud, P.A.1
Den Os, D.2
Wenger, C.D.3
Swaney, D.L.4
Schwartz, D.5
Sussman, M.R.6
Ane, J.M.7
Coon, J.J.8
-
16
-
-
15944377809
-
Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway
-
Gruhler, A., Olsen, J. V., Mohammed, S., Mortensen, P., Faergeman, N. J., Mann, M., and Jensen, O. N. (2005). Quantitative phosphoproteomics applied to the yeast pheromone signaling pathway. Mol. Cell. Proteomics 4, 310-327.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 310-327
-
-
Gruhler, A.1
Olsen, J.V.2
Mohammed, S.3
Mortensen, P.4
Faergeman, N.J.5
Mann, M.6
Jensen, O.N.7
-
17
-
-
38549127781
-
PhosPhAt: A database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor
-
Heazlewood, J. L., Durek, P., Hummel, J., Selbig, J., Weckwerth, W., Walther, D., and Schulze, W. X. (2008). PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res. 36, D1015-D1021.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Heazlewood, J.L.1
Durek, P.2
Hummel, J.3
Selbig, J.4
Weckwerth, W.5
Walther, D.6
Schulze, W.X.7
-
18
-
-
84857047339
-
PhosphoSitePlus: A comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse
-
Hornbeck, P. V., Kornhauser, J. M., Tkachev, S., Zhang, B., Skrzypek, E., Murray, B., Latham, V., and Sullivan, M. (2012). PhosphoSitePlus: a comprehensive resource for investigating the structure and function of experimentally determined post-translational modifications in man and mouse. Nucleic Acids Res. 40, D261-D270.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Hornbeck, P.V.1
Kornhauser, J.M.2
Tkachev, S.3
Zhang, B.4
Skrzypek, E.5
Murray, B.6
Latham, V.7
Sullivan, M.8
-
19
-
-
70749136439
-
Functional phosphoproteomic profiling of phosphorylation sites in membrane fractions of salt-stressed Arabidopsis thaliana
-
Hsu, J. L., Wang, L. Y., Wang, S. Y., Lin, C. H., Ho, K. C., Shi, F. K., and Chang, I. F. (2009). Functional phosphoproteomic profiling of phosphorylation sites in membrane fractions of salt-stressed Arabidopsis thaliana. Proteome Sci. 7, 42.
-
(2009)
Proteome Sci.
, vol.7
, pp. 42
-
-
Hsu, J.L.1
Wang, L.Y.2
Wang, S.Y.3
Lin, C.H.4
Ho, K.C.5
Shi, F.K.6
Chang, I.F.7
-
20
-
-
2342473198
-
The importance of intrinsic disorder for protein phosphorylation
-
Iakoucheva, L. M., Radivojac, P., Brown, C. J., O'Connor, T. R., Sikes, J. G., Obradovic, Z., and Dunker, A. K. (2004). The importance of intrinsic disorder for protein phosphorylation. Nucleic Acids Res. 32, 1037-1049.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1037-1049
-
-
Iakoucheva, L.M.1
Radivojac, P.2
Brown, C.J.3
O'Connor, T.R.4
Sikes, J.G.5
Obradovic, Z.6
Dunker, A.K.7
-
21
-
-
69949111008
-
A survey of theArabidopsis thaliana mitochondrial phosphoproteome
-
Ito, J., Taylor, N. L., Castleden, I., Weckwerth, W., Millar, A. H., and Heazlewood, J. L. (2009). A survey of theArabidopsis thaliana mitochondrial phosphoproteome. Proteomics 9, 4229-4240.
-
(2009)
Proteomics
, vol.9
, pp. 4229-4240
-
-
Ito, J.1
Taylor, N.L.2
Castleden, I.3
Weckwerth, W.4
Millar, A.H.5
Heazlewood, J.L.6
-
22
-
-
63349091729
-
Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana
-
Jones, A. M., Maclean, D., Studholme, D. J., Serna-Sanz, A., Andreasson, E., Rathjen, J. P., and Peck, S. C. (2009). Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana. J. Proteomics 72, 439-451.
-
(2009)
J. Proteomics
, vol.72
, pp. 439-451
-
-
Jones, A.M.1
McLean, D.2
Studholme, D.J.3
Serna-Sanz, A.4
Andreasson, E.5
Rathjen, J.P.6
Peck, S.C.7
-
23
-
-
77957682118
-
In planta changes in protein phosphorylation induced by the plant hormone abscisic acid
-
Kline, K. G., Barrett-Wilt, G. A., and Sussman, M. R. (2010). In planta changes in protein phosphorylation induced by the plant hormone abscisic acid. Proc. Natl. Acad. Sci. U.S.A. 107, 15986-15991.
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 15986-15991
-
-
Kline, K.G.1
Barrett-Wilt, G.A.2
Sussman, M.R.3
-
24
-
-
63049130982
-
Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer
-
Li, H., Wong, W. S., Zhu, L., Guo, H. W., Ecker, J., and Li, N. (2009). Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer. Proteomics 9, 1646-1661.
-
(2009)
Proteomics
, vol.9
, pp. 1646-1661
-
-
Li, H.1
Wong, W.S.2
Zhu, L.3
Guo, H.W.4
Ecker, J.5
Li, N.6
-
25
-
-
84860549883
-
Phosphoproteomic analysis of seed maturation inArabidopsis, rapeseed, and soybean
-
Meyer, L. J., Gao, J., Xu, D., and Thelen, J. J. (2012). Phosphoproteomic analysis of seed maturation inArabidopsis, rapeseed, and soybean. Plant Physiol. 159, 517-528.
-
(2012)
Plant Physiol.
, vol.159
, pp. 517-528
-
-
Meyer, L.J.1
Gao, J.2
Xu, D.3
Thelen, J.J.4
-
26
-
-
77954247252
-
Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants
-
Nakagami, H., Sugiyama, N., Mochida, K., Daudi, A., Yoshida, Y., Toyoda, T., Tomita, M., Ishihama, Y., and Shirasu, K. (2010). Large-scale comparative phosphoproteomics identifies conserved phosphorylation sites in plants. Plant Physiol. 153, 1161-1174.
-
(2010)
Plant Physiol.
, vol.153
, pp. 1161-1174
-
-
Nakagami, H.1
Sugiyama, N.2
Mochida, K.3
Daudi, A.4
Yoshida, Y.5
Toyoda, T.6
Tomita, M.7
Ishihama, Y.8
Shirasu, K.9
-
27
-
-
0032930639
-
Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: Potentials and limitations
-
Neubauer, G., and Mann, M. (1999). Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: potentials and limitations. Anal. Chem. 71, 235-242.
-
(1999)
Anal. Chem.
, vol.71
, pp. 235-242
-
-
Neubauer, G.1
Mann, M.2
-
28
-
-
34548128405
-
Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses
-
Nuhse, T. S., Bottrill, A. R., Jones, A. M., and Peck, S. C. (2007). Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses. Plant J. 51, 931-940.
-
(2007)
Plant J.
, vol.51
, pp. 931-940
-
-
Nuhse, T.S.1
Bottrill, A.R.2
Jones, A.M.3
Peck, S.C.4
-
29
-
-
4544291080
-
Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database
-
Nuhse, T. S., Stensballe, A., Jensen, O. N., and Peck, S. C. (2004). Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell 16, 2394-2405.
-
(2004)
Plant Cell
, vol.16
, pp. 2394-2405
-
-
Nuhse, T.S.1
Stensballe, A.2
Jensen, O.N.3
Peck, S.C.4
-
30
-
-
30344485673
-
Exploiting heterogeneous sequence properties improves prediction of protein disorder
-
Obradovic, Z., Peng, K., Vucetic, S., Radivojac, P., and Dunker, A. K. (2005). Exploiting heterogeneous sequence properties improves prediction of protein disorder. Proteins 61(Suppl. 7), 176-182.
-
(2005)
Proteins
, vol.61
, Issue.SUPPL. 7
, pp. 176-182
-
-
Obradovic, Z.1
Peng, K.2
Vucetic, S.3
Radivojac, P.4
Dunker, A.K.5
-
31
-
-
75549085083
-
Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology
-
Prasad, T. S., Kandasamy, K., and Pandey, A. (2009). Human Protein Reference Database and Human Proteinpedia as discovery tools for systems biology. Methods Mol. Biol. 577, 67-79.
-
(2009)
Methods Mol. Biol.
, vol.577
, pp. 67-79
-
-
Prasad, T.S.1
Kandasamy, K.2
Pandey, A.3
-
32
-
-
66649127498
-
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks
-
Reiland, S., Messerli, G., Baerenfaller, K., Gerrits, B., Endler, A., Grossmann, J., Gruissem, W., and Baginsky, S. (2009). Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiol. 150, 889-903.
-
(2009)
Plant Physiol.
, vol.150
, pp. 889-903
-
-
Reiland, S.1
Messerli, G.2
Baerenfaller, K.3
Gerrits, B.4
Endler, A.5
Grossmann, J.6
Gruissem, W.7
Baginsky, S.8
-
33
-
-
43249124511
-
Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis
-
Sugiyama, N., Nakagami, H., Mochida, K., Daudi, A., Tomita, M., Shirasu, K., and Ishihama, Y. (2008). Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis. Mol. Syst. Biol. 4, 193.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 193
-
-
Sugiyama, N.1
Nakagami, H.2
Mochida, K.3
Daudi, A.4
Tomita, M.5
Shirasu, K.6
Ishihama, Y.7
-
34
-
-
0036246737
-
The acidic ribosomal P proteins
-
Tchorzewski, M. (2002). The acidic ribosomal P proteins. Int. J. Biochem. Cell Biol. 34, 911-915.
-
(2002)
Int. J. Biochem. Cell Biol.
, vol.34
, pp. 911-915
-
-
Tchorzewski, M.1
-
35
-
-
43249117231
-
The Protein phosphatases and protein kinases of Arabidopsis thaliana
-
Wang, H., Chevalier, D., Larue, C., Ki Cho, S., and Walker, J. C. (2007). The Protein phosphatases and protein kinases of Arabidopsis thaliana. Arabidopsis Book 5, e0106.
-
(2007)
Arabidopsis Book
, vol.5
-
-
Wang, H.1
Chevalier, D.2
Larue, C.3
Ki Cho, S.4
Walker, J.C.5
-
36
-
-
67649518350
-
A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis
-
Wang, Z., Dong, G., Singh, S., Steen, H., and Li, J. (2009). A simple and effective method for detecting phosphopeptides for phosphoproteomic analysis. J. Proteomics 72, 831-835.
-
(2009)
J. Proteomics
, vol.72
, pp. 831-835
-
-
Wang, Z.1
Dong, G.2
Singh, S.3
Steen, H.4
Li, J.5
-
37
-
-
52649180552
-
Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction ofArabidopsis thaliana
-
Whiteman, S. A., Serazetdinova, L., Jones, A. M., Sanders, D., Rathjen, J., Peck, S. C., and Maathuis, F. J. (2008). Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction ofArabidopsis thaliana. Proteomics 8, 3536-3547.
-
(2008)
Proteomics
, vol.8
, pp. 3536-3547
-
-
Whiteman, S.A.1
Serazetdinova, L.2
Jones, A.M.3
Sanders, D.4
Rathjen, J.5
Peck, S.C.6
Maathuis, F.J.7
-
38
-
-
84890499160
-
Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites
-
Wolschin, F., and Weckwerth, W. (2005). Combining metal oxide affinity chromatography (MOAC) and selective mass spectrometry for robust identification of in vivo protein phosphorylation sites. Plant Methods 1, 9.
-
(2005)
Plant Methods
, vol.1
, pp. 9
-
-
Wolschin, F.1
Weckwerth, W.2
|