-
1
-
-
49849088762
-
Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis
-
de la Fuente van Bentem, S., Anrather, D., Dohnal, I., Roitinger, E., Csaszar, E., Joore, J., Buijnink, J., Carreri, A., Forzani, C., Lorkovic, Z.J. et al. (2008) Site-specific phosphorylation profiling of Arabidopsis proteins by mass spectrometry and peptide chip analysis. J. Proteome Res., 7, 2458-2470.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 2458-2470
-
-
de la Fuente van Bentem, S.1
Anrather, D.2
Dohnal, I.3
Roitinger, E.4
Csaszar, E.5
Joore, J.6
Buijnink, J.7
Carreri, A.8
Forzani, C.9
Lorkovic, Z.J.10
-
2
-
-
63349091729
-
Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana
-
Jones, A.M., Maclean, D., Studholme, D.J., Serna-Sanz, A., Andreasson, E., Rathjen, J.P. and Peck, S.C. (2009) Phosphoproteomic analysis of nuclei-enriched fractions from Arabidopsis thaliana. J. Proteomics, 72, 439-451.
-
(2009)
J. Proteomics
, vol.72
, pp. 439-451
-
-
Jones, A.M.1
Maclean, D.2
Studholme, D.J.3
Serna-Sanz, A.4
Andreasson, E.5
Rathjen, J.P.6
Peck, S.C.7
-
3
-
-
63049130982
-
Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer
-
Li, H., Wong, W.S., Zhu, L., Guo, H.W., Ecker, J. and Li, N. (2009) Phosphoproteomic analysis of ethylene-regulated protein phosphorylation in etiolated seedlings of Arabidopsis mutant ein2 using two-dimensional separations coupled with a hybrid quadrupole time-of-flight mass spectrometer. Proteomics, 9, 1646-1661.
-
(2009)
Proteomics
, vol.9
, pp. 1646-1661
-
-
Li, H.1
Wong, W.S.2
Zhu, L.3
Guo, H.W.4
Ecker, J.5
Li, N.6
-
4
-
-
66649127498
-
Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks
-
Reiland, S., Messerli, G., Baerenfäller, K., Gerrits, B., Endler, A., Grossmann, J., Gruissem, W. and Baginsky, S. (2009) Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks. Plant Physiol., 150, 889-903.
-
(2009)
Plant Physiol.
, vol.150
, pp. 889-903
-
-
Reiland, S.1
Messerli, G.2
Baerenfäller, K.3
Gerrits, B.4
Endler, A.5
Grossmann, J.6
Gruissem, W.7
Baginsky, S.8
-
5
-
-
43249124511
-
Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis
-
Sugiyama, N., Nakagami, H., Mochida, K., Daudi, A., Tomita, M., Shirasu, K. and Ishihama, Y. (2008) Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis. Mol. Syst. Biol., 4, e1-7.
-
(2008)
Mol. Syst. Biol.
, vol.4
-
-
Sugiyama, N.1
Nakagami, H.2
Mochida, K.3
Daudi, A.4
Tomita, M.5
Shirasu, K.6
Ishihama, Y.7
-
6
-
-
52649180552
-
Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana
-
Whiteman, S.-A., Serazetdinova, L., Jones, A.M., Sanders, D., Rathjen, J., Peck, S.C. and Maathuis, F.J.M. (2008) Identification of novel proteins and phosphorylation sites in a tonoplast enriched membrane fraction of Arabidopsis thaliana. Proteomics, 8, 3536-3547.
-
(2008)
Proteomics
, vol.8
, pp. 3536-3547
-
-
Whiteman, S.-A.1
Serazetdinova, L.2
Jones, A.M.3
Sanders, D.4
Rathjen, J.5
Peck, S.C.6
Maathuis, F.J.M.7
-
7
-
-
61549096121
-
Plant phosphoproteomics: an update
-
Kersten, B., Agrawal, G.K., Durek, P., Neigenfind, J., Schulze, W., Walther, D. and Rakwal, R. (2009) Plant phosphoproteomics: an update. Proteomics, 9, 964-988.
-
(2009)
Proteomics
, vol.9
, pp. 964-988
-
-
Kersten, B.1
Agrawal, G.K.2
Durek, P.3
Neigenfind, J.4
Schulze, W.5
Walther, D.6
Rakwal, R.7
-
8
-
-
32544450674
-
Structural mechanism of plant aquaporin gating
-
Tornroth-Horsefield, S., Wang, Y., Hedfalk, K., Johanson, U., Karlsson, M., Tajkhorshid, E., Neutze, R. and Kjellbom, P. (2006) Structural mechanism of plant aquaporin gating. Nature, 439, 688-694.
-
(2006)
Nature
, vol.439
, pp. 688-694
-
-
Tornroth-Horsefield, S.1
Wang, Y.2
Hedfalk, K.3
Johanson, U.4
Karlsson, M.5
Tajkhorshid, E.6
Neutze, R.7
Kjellbom, P.8
-
9
-
-
46749099449
-
Multiple phosphorylations in the C-terminal tail of plant plasma membrane aquaporins: role in subcellular trafficking of AtPIP2;1 in response to salt stress
-
Prak, S., Hem, S., Boudet, J., Viennois, G., Sommerer, N., Rossignol, M., Maurel, C. and Santoni, V. (2008) Multiple phosphorylations in the C-terminal tail of plant plasma membrane aquaporins: role in subcellular trafficking of AtPIP2;1 in response to salt stress. Mol. Cell. Proteomics, 7, 1019-1030.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 1019-1030
-
-
Prak, S.1
Hem, S.2
Boudet, J.3
Viennois, G.4
Sommerer, N.5
Rossignol, M.6
Maurel, C.7
Santoni, V.8
-
10
-
-
35648996970
-
Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis
-
Niittylä, T., Fuglsang, A.T., Palmgren, M.G., Frommer, W.B. and Schulze, W.X. (2007) Temporal analysis of sucrose-induced phosphorylation changes in plasma membrane proteins of Arabidopsis. Mol. Cell. Proteomics, 6, 1711-1726.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 1711-1726
-
-
Niittylä, T.1
Fuglsang, A.T.2
Palmgren, M.G.3
Frommer, W.B.4
Schulze, W.X.5
-
11
-
-
28544435430
-
In vivo regulatory phosphorylation of novel phosphoenolpyruvate carboxylase isoforms in endosperm of developing castor oil seeds
-
Tripodi, K.E., Turner, W.L., Gennidakis, S. and Plaxton, W.C. (2005) In vivo regulatory phosphorylation of novel phosphoenolpyruvate carboxylase isoforms in endosperm of developing castor oil seeds. Plant Physiol., 139, 969-978.
-
(2005)
Plant Physiol.
, vol.139
, pp. 969-978
-
-
Tripodi, K.E.1
Turner, W.L.2
Gennidakis, S.3
Plaxton, W.C.4
-
12
-
-
0034792284
-
Post-translational regulation of nitrate reductase: mechanism, physiological relevance and environmental triggers
-
Kaiser, W.M. and Huber, S.C. (2001) Post-translational regulation of nitrate reductase: mechanism, physiological relevance and environmental triggers. J. Exp. Bot., 52, 1981-1989.
-
(2001)
J. Exp. Bot.
, vol.52
, pp. 1981-1989
-
-
Kaiser, W.M.1
Huber, S.C.2
-
13
-
-
70149092747
-
Coupling oxidative signals to protein phosphorylation via methionine oxidation in Arabidopsis
-
Hardin, S.C., Larue, C.T., Oh, M.H., Jain, V. and Huber, S.C. (2009) Coupling oxidative signals to protein phosphorylation via methionine oxidation in Arabidopsis. Biochem. J., 422, 305-312.
-
(2009)
Biochem. J.
, vol.422
, pp. 305-312
-
-
Hardin, S.C.1
Larue, C.T.2
Oh, M.H.3
Jain, V.4
Huber, S.C.5
-
14
-
-
33750546025
-
Additive contribution of AMT1;1 and AMT1;3 to high-affinity ammonium uptake across the plasma membrane of nitrogen-deficient Arabidopsis roots
-
Loque, D., Yuan, L., Kojima, S., Gojon, A., Wirth, J., Gazzarrini, S., Ishiyama, K., Takahashi, H. and von Wiren, N. (2006) Additive contribution of AMT1;1 and AMT1;3 to high-affinity ammonium uptake across the plasma membrane of nitrogen-deficient Arabidopsis roots. Plant J., 48, 522-534.
-
(2006)
Plant J.
, vol.48
, pp. 522-534
-
-
Loque, D.1
Yuan, L.2
Kojima, S.3
Gojon, A.4
Wirth, J.5
Gazzarrini, S.6
Ishiyama, K.7
Takahashi, H.8
von Wiren, N.9
-
15
-
-
58849127342
-
Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis
-
Oh, M.H., Wang, X., Kota, U., Goshe, M.B., Clouse, S.D. and Huber, S.C. (2009) Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis. Proc. Natl Acad. Sci. USA, 106, 658-663.
-
(2009)
Proc. Natl Acad. Sci. USA
, vol.106
, pp. 658-663
-
-
Oh, M.H.1
Wang, X.2
Kota, U.3
Goshe, M.B.4
Clouse, S.D.5
Huber, S.C.6
-
16
-
-
38549127781
-
PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor
-
Heazlewood, J.L., Durek, P., Hummel, J., Selbig, J., Weckwerth, W., Walther, D. and Schulze, W.X. (2008) PhosPhAt: a database of phosphorylation sites in Arabidopsis thaliana and a plant-specific phosphorylation site predictor. Nucleic Acids Res., 36, D1015-D1021.
-
(2008)
Nucleic Acids Res.
, vol.36
-
-
Heazlewood, J.L.1
Durek, P.2
Hummel, J.3
Selbig, J.4
Weckwerth, W.5
Walther, D.6
Schulze, W.X.7
-
17
-
-
27244453164
-
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses
-
Usadel, B., Nagel, A., Thimm, O., Redestig, H., Bläsing, O.E., Palacios-Rojas, N., Selbig, J., Hannemann, J., Piques, M.C., Steinhauser, D. et al. (2005) Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of coresponding genes, and comparison with known responses. Plant Physiol., 138, 1195-1204.
-
(2005)
Plant Physiol.
, vol.138
, pp. 1195-1204
-
-
Usadel, B.1
Nagel, A.2
Thimm, O.3
Redestig, H.4
Bläsing, O.E.5
Palacios-Rojas, N.6
Selbig, J.7
Hannemann, J.8
Piques, M.C.9
Steinhauser, D.10
-
18
-
-
0037247505
-
ARAMEMNON, a novel database for Arabidopsis integral membrane proteins
-
Schwacke, R., Schneider, A., van der Graaff, E., Fischer, K., Catoni, E., Desimone, M., Frommer, W.B., Flügge, U.-I. and Kunze, R. (2003) ARAMEMNON, a novel database for Arabidopsis integral membrane proteins. Plant Physiol., 131, 16-26.
-
(2003)
Plant Physiol.
, vol.131
, pp. 16-26
-
-
Schwacke, R.1
Schneider, A.2
van der Graaff, E.3
Fischer, K.4
Catoni, E.5
Desimone, M.6
Frommer, W.B.7
Flügge, U.-I.8
Kunze, R.9
-
19
-
-
40349091686
-
An electronic fluorescent pictograph browser for exploring and analyzing large-scale biological data sets
-
Winter, D., Vinegar, B., Nahal, H., Ammar, R., Wilson, G.V. and Provart, N.J. (2007) An "electronic fluorescent pictograph" browser for exploring and analyzing large-scale biological data sets. PLoS ONE, 2, e718.
-
(2007)
PLoS ONE
, vol.2
-
-
Winter, D.1
Vinegar, B.2
Nahal, H.3
Ammar, R.4
Wilson, G.V.5
Provart, N.J.6
-
20
-
-
58149197587
-
ATTED-II provides coexpressed gene networks for Arabidopsis
-
Obayahi, T., Hayashi, S., Saeki, M., Ohta, H. and Kinoshita, K. (2009) ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res., 37, D987-D991.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Obayahi, T.1
Hayashi, S.2
Saeki, M.3
Ohta, H.4
Kinoshita, K.5
-
21
-
-
33846085927
-
SUBA: the Arabidopsis Subcellular Database
-
Heazlewood, J.L., Verboom, R.E., Tonti-Filippini, J., Small, I. and Millar, A.H. (2007) SUBA: the Arabidopsis Subcellular Database. Nucleic Acids Res., 35, D213-D218.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Heazlewood, J.L.1
Verboom, R.E.2
Tonti-Filippini, J.3
Small, I.4
Millar, A.H.5
-
22
-
-
58149196188
-
GabiPD: the GABI primary database-a plant integrative 'omics' database
-
Riano-Pachon, D.M., Nagel, A., Neigenfind, J., Wagner, R., Basekow, R., Weber, E., Müller-Röber, B., Diehl, S. and Kersten, B. (2009) GabiPD: the GABI primary database-a plant integrative 'omics' database. Nucleic Acids Res., 37, D954-D959.
-
(2009)
Nucleic Acids Res.
, vol.37
-
-
Riano-Pachon, D.M.1
Nagel, A.2
Neigenfind, J.3
Wagner, R.4
Basekow, R.5
Weber, E.6
Müller-Röber, B.7
Diehl, S.8
Kersten, B.9
-
23
-
-
27944499451
-
An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets
-
Schwartz, D. and Gygi, S.P. (2005) An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets. Nat. Biotechnol., 23, 1391-1398.
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 1391-1398
-
-
Schwartz, D.1
Gygi, S.P.2
-
24
-
-
34548128405
-
Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses
-
Nühse, T.S., Bottrill, A.R., Jones, A.M. and Peck, S.C. (2007) Quantitative phosphoproteomic analysis of plasma membrane proteins reveals regulatory mechanisms of plant innate immune responses. Plant J., 51, 931-940.
-
(2007)
Plant J.
, vol.51
, pp. 931-940
-
-
Nühse, T.S.1
Bottrill, A.R.2
Jones, A.M.3
Peck, S.C.4
-
25
-
-
33750456519
-
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
-
Olsen, J.V., Blagoev, B., Gnad, F., Macek, B., Kumar, C., Mortensen, P. and Mann, M. (2006) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. Cell, 127, 635-648.
-
(2006)
Cell
, vol.127
, pp. 635-648
-
-
Olsen, J.V.1
Blagoev, B.2
Gnad, F.3
Macek, B.4
Kumar, C.5
Mortensen, P.6
Mann, M.7
-
26
-
-
63349105962
-
PhosCalc: a tool for evaluating the sites of peptide phosphorylation from Mass Spectrometer data
-
MacLean, D., Burrell, M.A., Studholme, D.J. and Jones, A.M. (2008) PhosCalc: a tool for evaluating the sites of peptide phosphorylation from Mass Spectrometer data. BMC Res. Notes, 1, 30.
-
(2008)
BMC Res. Notes
, vol.1
, pp. 30
-
-
MacLean, D.1
Burrell, M.A.2
Studholme, D.J.3
Jones, A.M.4
-
27
-
-
58149498875
-
MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays
-
Popescu, S.C., Popescu, G.V., Bachan, S., Zhang, Z., Gerstein, M., Snyder, M. and Dinesh-Kumar, S.P. (2009) MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Genes Dev., 23, 80-92.
-
(2009)
Genes Dev.
, vol.23
, pp. 80-92
-
-
Popescu, S.C.1
Popescu, G.V.2
Bachan, S.3
Zhang, Z.4
Gerstein, M.5
Snyder, M.6
Dinesh-Kumar, S.P.7
-
28
-
-
27644573819
-
High throughput identification of potential Arabidopsis mitogen-activated protein kinases substrates
-
Feilner, T., Hultschig, C., Lee, J.M., Meyer, S., Immink, R.G.H., Koenig, A., Possling, A., Seitz, H., Beveridge, A., Scheel, D. et al. (2005) High throughput identification of potential Arabidopsis mitogen-activated protein kinases substrates. Mol. Cell Proteomics, 4, 1558-1568.
-
(2005)
Mol. Cell Proteomics
, vol.4
, pp. 1558-1568
-
-
Feilner, T.1
Hultschig, C.2
Lee, J.M.3
Meyer, S.4
Immink, R.G.H.5
Koenig, A.6
Possling, A.7
Seitz, H.8
Beveridge, A.9
Scheel, D.10
-
29
-
-
34547110110
-
Quantitative phospho-proteomics of early elicitor signalling in Arabidopsis
-
Benschop, J.J., Mohammed, S., O'Flaherty, M., Heck, A.J., Slijper, M. and Menke, F.L. (2007) Quantitative phospho-proteomics of early elicitor signalling in Arabidopsis. Mol. Cell Proteomics, 6, 1705-1713.
-
(2007)
Mol. Cell Proteomics
, vol.6
, pp. 1705-1713
-
-
Benschop, J.J.1
Mohammed, S.2
O'Flaherty, M.3
Heck, A.J.4
Slijper, M.5
Menke, F.L.6
-
30
-
-
4544291080
-
Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database
-
Nühse, T.S., Stensballe, A., Jensen, O.N. and Peck, S.C. (2004) Phosphoproteomics of the Arabidopsis plasma membrane and a new phosphorylation site database. Plant Cell, 16, 2394-2405.
-
(2004)
Plant Cell
, vol.16
, pp. 2394-2405
-
-
Nühse, T.S.1
Stensballe, A.2
Jensen, O.N.3
Peck, S.C.4
-
31
-
-
76749130299
-
-
Springer, The Netherlands
-
Blume, Y.B., Lloyd, C.W. and Yemets, A.I. (2008) The plant cytoskeleton: a key tool for Agro-Biotechnology. Springer, The Netherlands, pp. 145-159.
-
(2008)
The plant cytoskeleton: a key tool for Agro-Biotechnology
, pp. 145-159
-
-
Blume, Y.B.1
Lloyd, C.W.2
Yemets, A.I.3
-
32
-
-
69949111008
-
A survey of the Arabidopsis thaliana mitochondrial phosphoproteome
-
(in press)
-
Ito, J., Taylor, N.L., Castleden, I., Weckwerth, W., Millar, A.H. and Heazlewood, J.L. (2009) A survey of the Arabidopsis thaliana mitochondrial phosphoproteome. Proteomics (in press).
-
(2009)
Proteomics
-
-
Ito, J.1
Taylor, N.L.2
Castleden, I.3
Weckwerth, W.4
Millar, A.H.5
Heazlewood, J.L.6
|