메뉴 건너뛰기




Volumn 101, Issue 8, 2014, Pages 1362-1374

Genetic variation in horizontally transmitted fungal endophytes of pine needles reveals population structure in cryptic species

Author keywords

Diversity; Foliar fungal endophyte; Lophodermium; Pinus; Rhytismataceae; Speciation

Indexed keywords

CONIFEROUS TREE; CRYPSIS; ENDOPHYTE; FOLIAGE; FUNGUS; GENETIC VARIATION; GEOGRAPHICAL DISTRIBUTION; MORPHOLOGY; POPULATION STRUCTURE; SPECIATION (BIOLOGY); SPECIES DIVERSITY; SPECIES RICHNESS;

EID: 84907340551     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.1400141     Document Type: Article
Times cited : (36)

References (93)
  • 1
    • 0000847921 scopus 로고    scopus 로고
    • Indices of multilocus linkage disequilibrium
    • Agapow P and A Burt. 2001. Indices of multilocus linkage disequilibrium. Molecular Ecology Notes 1: 101-102.
    • (2001) Molecular Ecology Notes , vol.1 , pp. 101-102
    • Agapow, P.1    Burt, A.2
  • 2
    • 0036694514 scopus 로고    scopus 로고
    • Environmental conditions and host genotype direct genetic diversity of Venturia ditricha, a fungal endophyte of birth trees
    • Ahlholm, J. U., M. Helander, J Henriksson, M Metzler and K Saikkonen. 2002. Environmental conditions and host genotype direct genetic diversity of Venturia ditricha, a fungal endophyte of birth trees. Evolution 56: 1566-1573.
    • (2002) Evolution , vol.56 , pp. 1566-1573
    • Ahlholm, J.U.1    Helander, M.2    Henriksson, J.3    Metzler, M.4    Saikkonen, K.5
  • 3
    • 34547197374 scopus 로고    scopus 로고
    • Diversity and phylogenetic affinities of foliar fungal endo-phytes in loblolly pine inferred by culturing and environmental PCR
    • Arnold, A. E., D. A. Henk, R. L. Eells F L utzoni and R V ilgalys 2007. Diversity and phylogenetic affinities of foliar fungal endo-phytes in loblolly pine inferred by culturing and environmental PCR. Mycologia 99: 185-206.
    • (2007) Mycologia , vol.99 , pp. 185-206
    • Arnold, A.E.1    Henk, D.A.2    Eells, F.3    Lutzoni, R.L.4    Ilgalys, R.V.5
  • 4
    • 34247175933 scopus 로고    scopus 로고
    • Diversity and host range of foliar fungal endophytes: Are tropical leaves biodiversity hotspots?
    • Arnold, A. E., and F Lutzoni. 2007. Diversity and host range of foliar fungal endophytes: Are tropical leaves biodiversity hotspots? Ecology 88: 541-549.
    • (2007) Ecology , vol.88 , pp. 541-549
    • Arnold, A.E.1    Lutzoni, F.2
  • 6
    • 68149135199 scopus 로고    scopus 로고
    • A phylogenetic estimation of trophic transition networks for Ascomycetous fungi: Are lichens cradles of symbiotrophic fungal diversification?
    • Arnold, A. E., J. Miadlikowska, K. L. Higgins, S. D. Sarvate, P Gugger, A Way, V Hofstetter et al. 2009. A phylogenetic estimation of trophic transition networks for Ascomycetous fungi: Are lichens cradles of symbiotrophic fungal diversification? Systematic Biology 58: 283-297.
    • (2009) Systematic Biology , vol.58 , pp. 283-297
    • Arnold, A.E.1    Miadlikowska, J.2    Higgins, K.L.3    Sarvate, S.D.4    Gugger, P.5    Way, A.6    Hofstetter, V.7
  • 7
    • 33745622420 scopus 로고    scopus 로고
    • SNAP: Combine and Map modules for multilocus population genetic analysis
    • Aylor, D. L., E. W. Price and I Carbone. 2006. SNAP: Combine and Map modules for multilocus population genetic analysis. Bioinformatics 22: 1399-1401.
    • (2006) Bioinformatics , vol.22 , pp. 1399-1401
    • Aylor, D.L.1    Price, E.W.2    Carbone, I.3
  • 8
    • 70349144999 scopus 로고    scopus 로고
    • The beneficial endophyte Trichoderma hamatum isolate DIS 219b promotes growth and delays the onset of the drought response in Theobroma cacao
    • Bae, H., R. C. Sicher, M. S. Kim, S.-H. Kim, M. D. Strem, R. L. Melnick and B. A. Bailey. 2009. The beneficial endophyte Trichoderma hamatum isolate DIS 219b promotes growth and delays the onset of the drought response in Theobroma cacao. Journal of Experimental Botany 60: 3279-3295.
    • (2009) Journal of Experimental Botany , vol.60 , pp. 3279-3295
    • Bae, H.1    Sicher, R.C.2    Kim, M.S.3    Kim, S.-H.4    Strem, M.D.5    Melnick, R.L.6    Bailey, B.A.7
  • 10
    • 70449714723 scopus 로고    scopus 로고
    • version 2, Department of Plant Pathology, North Carolina State University
    • Bowden, L. C., E. W. Price and I Carbone. 2008. SNAP Clade and Matrix, version 2. Available at http://snap.hpc.ncsu.edu, Department of Plant Pathology, North Carolina State University.
    • (2008) SNAP Clade and Matrix
    • Bowden, L.C.1    Price, E.W.2    Carbone, I.3
  • 11
    • 0024251531 scopus 로고
    • Fungal endophytes in stems and leaves: From latent pathogens to mutualistic symbiont
    • Carroll, G. 1988. Fungal endophytes in stems and leaves: From latent pathogens to mutualistic symbiont. Ecology 69: 2-9.
    • (1988) Ecology , vol.69 , pp. 2-9
    • Carroll, G.1
  • 13
    • 0033771358 scopus 로고    scopus 로고
    • TCS:A computer program to estimate gene genealogies
    • Clement M, D Posada and K Crandall. 2000. TCS:A computer program to estimate gene genealogies. Molecular Ecology 9: 1657-1659.
    • (2000) Molecular Ecology , vol.9 , pp. 1657-1659
    • Clement, M.1    Posada, D.2    Crandall, K.3
  • 14
    • 0030901183 scopus 로고    scopus 로고
    • Population biology of Rhizoctonia solani complex
    • Cubeta, M. A., and R Vilgalys. 1997. Population biology of Rhizoctonia solani complex. Phytopathology 87: 480-484.
    • (1997) Phytopathology , vol.87 , pp. 480-484
    • Cubeta, M.A.1    Vilgalys, R.2
  • 15
    • 84907352445 scopus 로고
    • Contributions from the Arnold Arboretum of Harvard University
    • Darker, G. D. 1932. They Hypodermataceae of conifers. Contributions from the Arnold Arboretum of Harvard University 1: 74.
    • (1932) They Hypodermataceae of Conifers , vol.1 , pp. 74
    • Darker, G.D.1
  • 16
    • 0004607787 scopus 로고
    • New and noteworthy fungi IV. Discomycetes including Phacidiaceae and Hypodermataceae
    • Dearness, J. 1926. New and noteworthy fungi IV. Discomycetes including Phacidiaceae and Hypodermataceae. Mycologia 18: 236-255.
    • (1926) Mycologia , vol.18 , pp. 236-255
    • Dearness, J.1
  • 17
    • 0036270265 scopus 로고    scopus 로고
    • Genetic relationships of endophytic Lophodermium nitens isolates from needles of Pinus strobus
    • Deckert R, T Hsiang and R Peterson. 2002. Genetic relationships of endophytic Lophodermium nitens isolates from needles of Pinus strobus. Mycological Research 106: 305-313.
    • (2002) Mycological Research , vol.106 , pp. 305-313
    • Deckert, R.1    Hsiang, T.2    Peterson, R.3
  • 19
    • 37649024043 scopus 로고    scopus 로고
    • The ade4 package: Implementing the duality diagram for ecologists
    • Dray S and A. B. Dufour. 2007. The ade4 package: Implementing the duality diagram for ecologists. Journal of Statistical Software 2 2: 1-20.
    • (2007) Journal of Statistical Software , vol.2 , Issue.2 , pp. 1-20
    • Dray, S.1    Dufour, A.B.2
  • 20
    • 84881322635 scopus 로고    scopus 로고
    • Spatial analysis of Rhizopogon genotypes within-population genetic structure differs between two sympatric sister-species of ectomycor-rhizal fungi, Rhizopogon vinicolor and R. vesiculosus
    • Dunham, S. M., A. B. Mujic, J. W. Spatafora and A. M. Kretzer. 2013. Spatial analysis of Rhizopogon genotypes within-population genetic structure differs between two sympatric sister-species of ectomycor-rhizal fungi, Rhizopogon vinicolor and R. vesiculosus. Mycologia 105: 814-826.
    • (2013) Mycologia , vol.105 , pp. 814-826
    • Dunham, S.M.1    Mujic, A.B.2    Spatafora, J.W.3    Kretzer, A.M.4
  • 21
    • 84882759440 scopus 로고    scopus 로고
    • STRUCTURE HARVESTER: A website and program for visualizing structure output and implementing the Evanno method
    • Earl, D. A., and B. M. von Holdt. 2012. STRUCTURE HARVESTER: A website and program for visualizing structure output and implementing the Evanno method. Conservation Genetics Resources 4: 359-361.
    • (2012) Conservation Genetics Resources , vol.4 , pp. 359-361
    • Earl, D.A.1    von Holdt, B.M.2
  • 22
    • 21244479740 scopus 로고    scopus 로고
    • Detecting the number of clusters of individuals using the software structure: A simulation study
    • Evanno G, S Regnaut and J Goudet. 2005. Detecting the number of clusters of individuals using the software structure: A simulation study. Molecular Ecology 14: 2611-2620.
    • (2005) Molecular Ecology , vol.14 , pp. 2611-2620
    • Evanno, G.1    Regnaut, S.2    Goudet, J.3
  • 23
    • 85007110786 scopus 로고    scopus 로고
    • Arlequin (version 3.0): An integrated software package for population genetics data analysis
    • Excoffier L, G Laval and S Schneider. 2005. Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics 1: 47-50.
    • (2005) Evolutionary Bioinformatics , vol.1 , pp. 47-50
    • Excoffier, L.1    Laval, G.2    Schneider, S.3
  • 24
    • 0033860299 scopus 로고    scopus 로고
    • A test for concordance between the multilocus genealogies of genes and microsatellites in the pathogenic fungus Coccidioides immitis
    • Fisher M, G Koenig, T White and J Taylor. 2000. A test for concordance between the multilocus genealogies of genes and microsatellites in the pathogenic fungus Coccidioides immitis. Molecular Biology and Evolution 17: 1164-1174.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 1164-1174
    • Fisher, M.1    Koenig, G.2    White, T.3    Taylor, J.4
  • 25
    • 0029391126 scopus 로고
    • Statistical properties of segregating sites
    • Fu, Y.-X. 1995. Statistical properties of segregating sites. Theoretical Population Biology 48: 172-197.
    • (1995) Theoretical Population Biology , vol.48 , pp. 172-197
    • Fu, Y.-X.1
  • 27
    • 84864572814 scopus 로고    scopus 로고
    • Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes
    • Gazis R, J Miadlikowska, F Lutzoni, A.E. Arnold and P Chaverri 2012. Culture-based study of endophytes associated with rubber trees in Peru reveals a new class of Pezizomycotina: Xylonomycetes. Molecular Phylogenetics and Evolution 65: 294-304.
    • (2012) Molecular Phylogenetics and Evolution , vol.65 , pp. 294-304
    • Gazis, R.1    Miadlikowska, J.2    Lutzoni, F.3    Arnold, A.E.4    Chaverri, P.5
  • 28
    • 79960108950 scopus 로고    scopus 로고
    • Species delimitation in fungal endophyte diversity studies and its implications in ecological and bio-geographic inferences
    • Gazis R, S Rehner and P Chaverri. 2011. Species delimitation in fungal endophyte diversity studies and its implications in ecological and bio-geographic inferences. Molecular Ecology 20: 3001-3013.
    • (2011) Molecular Ecology , vol.20 , pp. 3001-3013
    • Gazis, R.1    Rehner, S.2    Chaverri, P.3
  • 29
    • 15944362787 scopus 로고    scopus 로고
    • Phylogeny and classification of Pinus
    • Gernandt D, G Lopez, S Garcia and A Liston. 2005. Phylogeny and classification of Pinus. Taxon 54: 29-42.
    • (2005) Taxon , vol.54 , pp. 29-42
    • Gernandt, D.1    Lopez, G.2    Garcia, S.3    Liston, A.4
  • 30
    • 77954815758 scopus 로고    scopus 로고
    • Linking the emergence of fungal plant diseases with ecological speciation
    • Giraud T, P Gladieux and S Gavrilets. 2010. Linking the emergence of fungal plant diseases with ecological speciation. Trends in Ecology & Evolution 25: 387-395.
    • (2010) Trends In Ecology & Evolution , vol.25 , pp. 387-395
    • Giraud, T.1    Gladieux, P.2    Gavrilets, S.3
  • 31
    • 34247384148 scopus 로고    scopus 로고
    • Host islands within the California Northern Channel Islands create fine-scale genetic structure in two sympatric species of the symbiotic ectomycorrhizal fungus Rhizopogon
    • Grubisha, L. C., S. E. Bergemann and T. D. Bruns. 2007. Host islands within the California Northern Channel Islands create fine-scale genetic structure in two sympatric species of the symbiotic ectomycorrhizal fungus Rhizopogon. Molecular Ecology 16: 1811-1822.
    • (2007) Molecular Ecology , vol.16 , pp. 1811-1822
    • Grubisha, L.C.1    Bergemann, S.E.2    Bruns, T.D.3
  • 32
    • 84864815656 scopus 로고    scopus 로고
    • Global species numbers of fungi: Are tropical studies and molecular approaches contributing to a more robust estimate?
    • Hawksworth, D. L. 2012. Global species numbers of fungi: Are tropical studies and molecular approaches contributing to a more robust estimate? Biodiversity and Conservation 21: 2425-2433.
    • (2012) Biodiversity and Conservation , vol.21 , pp. 2425-2433
    • Hawksworth, D.L.1
  • 33
    • 77952294620 scopus 로고    scopus 로고
    • Isolation with migration models for more than two populations
    • Hey, J. 2010. Isolation with migration models for more than two populations. Molecular Biology and Evolution 27: 905-920.
    • (2010) Molecular Biology and Evolution , vol.27 , pp. 905-920
    • Hey, J.1
  • 35
    • 40649095452 scopus 로고    scopus 로고
    • Geography and host identity interact to shape communities of endophytic fungi in cupressaceous trees
    • Hoffman MT and A. E. Arnold. 2008. Geography and host identity interact to shape communities of endophytic fungi in cupressaceous trees. Mycological Research 112: 331-344.
    • (2008) Mycological Research , vol.112 , pp. 331-344
    • Hoffman, M.T.1    Arnold, A.E.2
  • 36
    • 61849133540 scopus 로고    scopus 로고
    • Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants
    • Huang, W. Y., Y. Z. Cai, K. D. Hyde, H Corke and M Sun. 2008. Biodiversity of endophytic fungi associated with 29 traditional Chinese medicinal plants. Fungal Diversity 33: 61-75.
    • (2008) Fungal Diversity , vol.33 , pp. 61-75
    • Huang, W.Y.1    Cai, Y.Z.2    Hyde, K.D.3    Corke, H.4    Sun, M.5
  • 37
    • 0043015531 scopus 로고    scopus 로고
    • Microsatellites, from molecules to populations and back
    • Jarne P and P Lagoda. 1996. Microsatellites, from molecules to populations and back. Trends in Ecology & Evolution 11: 424-429.
    • (1996) Trends In Ecology & Evolution , vol.11 , pp. 424-429
    • Jarne, P.1    Lagoda, P.2
  • 38
    • 42449095851 scopus 로고    scopus 로고
    • Host speci-ficity is linked to intraspecific variability in the genus Lamellodiscus (Monogenea)
    • Kaci-Chaouch T, O Verneau and Y Desdevises. 2008. Host speci-ficity is linked to intraspecific variability in the genus Lamellodiscus (Monogenea). Parasitology 135: 607-616.
    • (2008) Parasitology , vol.135 , pp. 607-616
    • Kaci-Chaouch, T.1    Verneau, O.2    Desdevises, Y.3
  • 40
    • 0036897707 scopus 로고    scopus 로고
    • Estimation of nucleotide substitution rates in eurotiomycete fungi
    • Kasuga T, T White and J Taylor. 2002. Estimation of nucleotide substitution rates in eurotiomycete fungi. Molecular Biology and Evolution 19: 2318-2324.
    • (2002) Molecular Biology and Evolution , vol.19 , pp. 2318-2324
    • Kasuga, T.1    White, T.2    Taylor, J.3
  • 41
    • 69949146773 scopus 로고    scopus 로고
    • Fundamental evolutionary limits in ecological traits drive drosophila species distributions
    • Kellermann V, B van Heerwaarden, C. M. Sgro and A. A. Hoffmann. 2009. Fundamental evolutionary limits in ecological traits drive drosophila species distributions. Science 325: 1244-1246.
    • (2009) Science , vol.325 , pp. 1244-1246
    • Kellermann, V.1    Van Heerwaarden, B.2    Sgro, C.M.3    Hoffmann, A.A.4
  • 42
    • 84865487914 scopus 로고    scopus 로고
    • Symbiont communities and host genetic structure of the brain coral Platygyra verweyi, at the outlet of a nuclear power plant and adjacent areas
    • Keshavmurthy, S., C.-M. Hsu, C.-Y. Kuo, P.-J. Meng, J.-T. Wang and C A. Chen. 2012. Symbiont communities and host genetic structure of the brain coral Platygyra verweyi, at the outlet of a nuclear power plant and adjacent areas. Molecular Ecology 21: 4393-4407.
    • (2012) Molecular Ecology , vol.21 , pp. 4393-4407
    • Keshavmurthy, S.1    Hsu, C.-M.2    Kuo, C.-Y.3    Meng, P.-J.4    Wang, J.-T.5    Chen, C.A.6
  • 43
    • 77953098950 scopus 로고    scopus 로고
    • Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genus Symbiodinium
    • LaJeunesse, T. C., D. T. Pettay, E. M. Sampayo, N Phongsuwan, B Brown, D. O. Obura, O Hoegh-Guldberg and W. K. Fitt 2010. Long-standing environmental conditions, geographic isolation and host-symbiont specificity influence the relative ecological dominance and genetic diversification of coral endosymbionts in the genus Symbiodinium. Journal of Biogeography 37: 785-800.
    • (2010) Journal of Biogeography , vol.37 , pp. 785-800
    • Lajeunesse, T.C.1    Pettay, D.T.2    Sampayo, E.M.3    Phongsuwan, N.4    Brown, B.5    Obura, D.O.6    Hoegh-Guldberg, O.7    Fitt, W.K.8
  • 45
    • 84861380450 scopus 로고    scopus 로고
    • PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses
    • Lanfear R, B Calcott, S. Y. W. Ho and S Guindon. 2012. PartitionFinder: Combined selection of partitioning schemes and substitution models for phylogenetic analyses. Molecular Biology and Evolution 29: 1695-1701.
    • (2012) Molecular Biology and Evolution , vol.29 , pp. 1695-1701
    • Lanfear, R.1    Calcott, B.2    Ho, S.Y.W.3    Guindon, S.4
  • 46
    • 78751556706 scopus 로고    scopus 로고
    • Molecular phylogeny reveals a core clade of Rhytismatales
    • Lantz, H., P. R. Johnston, D Park and D. W. Minter. 2011. Molecular phylogeny reveals a core clade of Rhytismatales. Mycologia 103: 57-74.
    • (2011) Mycologia , vol.103 , pp. 57-74
    • Lantz, H.1    Johnston, P.R.2    Park, D.3    Minter, D.W.4
  • 47
    • 84857044195 scopus 로고    scopus 로고
    • Foliar nutrients shape fungal endophyte communities in Western white pine (Pinus monticola) with implications for white-tailed deer herbivory
    • Larkin, B. G., L. S. Hunt and P. W. Ramsey. 2012. Foliar nutrients shape fungal endophyte communities in Western white pine (Pinus monticola) with implications for white-tailed deer herbivory. Fungal Ecology 5: 252-260.
    • (2012) Fungal Ecology , vol.5 , pp. 252-260
    • Larkin, B.G.1    Hunt, L.S.2    Ramsey, P.W.3
  • 48
    • 0030311441 scopus 로고    scopus 로고
    • Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae)
    • Mason-Gamer R and E Kellogg. 1996. Testing for phylogenetic conflict among molecular data sets in the tribe Triticeae (Gramineae). Systematic Biology 45: 524-545.
    • (1996) Systematic Biology , vol.45 , pp. 524-545
    • Mason-Gamer, R.1    Kellogg, E.2
  • 49
    • 0036028757 scopus 로고    scopus 로고
    • Pathogen population genetics, evolutionary potential, and durable resistance
    • McDonald, B. A., and C Linde. 2002. Pathogen population genetics, evolutionary potential, and durable resistance. Annual Review of Phytopathology 40: 349-379.
    • (2002) Annual Review of Phytopathology , vol.40 , pp. 349-379
    • McDonald, B.A.1    Linde, C.2
  • 50
    • 0029803295 scopus 로고    scopus 로고
    • Recombination and the multilocus structure of fungal populations
    • Milgroom, M. G. 1996. Recombination and the multilocus structure of fungal populations. Annual Review of Phytopathology 34: 457-477.
    • (1996) Annual Review of Phytopathology , vol.34 , pp. 457-477
    • Milgroom, M.G.1
  • 52
    • 84900797959 scopus 로고    scopus 로고
    • Mobyle SNAP Workbench: A web-based analysis portal for population genetics and evolutionary genomics
    • 10.1093/bioinformatics/btu055
    • Monacell, J. T., and I Carbone. 2014. Mobyle SNAP Workbench: A web-based analysis portal for population genetics and evolutionary genomics. Bioinformatics 10.1093/bioinformatics/btu055.
    • (2014) Bioinformatics
    • Monacell, J.T.1    Carbone, I.2
  • 53
    • 0034914490 scopus 로고    scopus 로고
    • Diversity of endophytic fungi of single Norway spruce needles and their role as pioneer decomposers
    • Müller M, R Valjakka, A Suokko and J Hantula. 2001. Diversity of endophytic fungi of single Norway spruce needles and their role as pioneer decomposers. Molecular Ecology 10: 1801-1810.
    • (2001) Molecular Ecology , vol.10 , pp. 1801-1810
    • Müller, M.1    Valjakka, R.2    Suokko, A.3    Hantula, J.4
  • 54
    • 35248818230 scopus 로고    scopus 로고
    • Genetic diversity of Lophodermium piceae in South Finland
    • Müller, M. M., R. Valjakka and J H antula. 2007. Genetic diversity of Lophodermium piceae in South Finland. Forest Pathology 3 7: 329-337.
    • (2007) Forest Pathology , vol.3 , Issue.7 , pp. 329-337
    • Müller, M.M.1    Valjakka, R.2    Antula, J.H.3
  • 55
    • 40549143392 scopus 로고    scopus 로고
    • Ustilago maydis populations tracked maize through domestication and cultivation in the Americas
    • Munkacsi, A. B., S. Stoxen and G May. 2008. Ustilago maydis populations tracked maize through domestication and cultivation in the Americas. Proceedings. Biological Sciences 275: 1037-1046.
    • (2008) Proceedings. Biological Sciences , vol.275 , pp. 1037-1046
    • Munkacsi, A.B.1    Stoxen, S.2    May, G.3
  • 56
    • 0024658495 scopus 로고
    • Variances of the average numbers of nucleo-tide substitutions within and between populations
    • Nei M and L Jin. 1989. Variances of the average numbers of nucleo-tide substitutions within and between populations. Molecular Biology and Evolution 6: 290-300.
    • (1989) Molecular Biology and Evolution , vol.6 , pp. 290-300
    • Nei, M.1    Jin, L.2
  • 57
    • 0032927584 scopus 로고    scopus 로고
    • Polymorphic microsatellite markers for the banana pathogen Mycosphaerella fijiensis
    • Neu C, D Kaemmer, G Kahl, D Fischer and K Weising. 1999. Polymorphic microsatellite markers for the banana pathogen Mycosphaerella fijiensis. Molecular Ecology 8: 523-525.
    • (1999) Molecular Ecology , vol.8 , pp. 523-525
    • Neu, C.1    Kaemmer, D.2    Kahl, G.3    Fischer, D.4    Weising, K.5
  • 58
    • 0034967295 scopus 로고    scopus 로고
    • Distinguishing migration from isolation: A Markov chain Monte Carlo approach
    • Nielsen R and J Wakeley. 2001. Distinguishing migration from isolation: A Markov chain Monte Carlo approach. Genetics 158: 885-896.
    • (2001) Genetics , vol.158 , pp. 885-896
    • Nielsen, R.1    Wakeley, J.2
  • 60
    • 79953311131 scopus 로고    scopus 로고
    • Colonization and lignin decomposition of pine needle litter by Lophodermium pinastri
    • Osono T and D Hirose. 2011. Colonization and lignin decomposition of pine needle litter by Lophodermium pinastri. Forest Pathology 41: 156-162.
    • (2011) Forest Pathology , vol.41 , pp. 156-162
    • Osono, T.1    Hirose, D.2
  • 62
    • 1042304216 scopus 로고    scopus 로고
    • APE: Analyses of phy-logenetics and evolution in R language
    • Paradis E, J Claude and K Strimmer. 2004. APE: Analyses of phy-logenetics and evolution in R language. Bioinformatics 20: 289-290.
    • (2004) Bioinformatics , vol.20 , pp. 289-290
    • Paradis, E.1    Claude, J.2    Strimmer, K.3
  • 63
    • 13844266052 scopus 로고    scopus 로고
    • SNAP: Workbench management tool for evolutionary population genetic analysis
    • Price E and I Carbone. 2005. SNAP: Workbench management tool for evolutionary population genetic analysis. Bioinformatics 21: 402-404.
    • (2005) Bioinformatics , vol.21 , pp. 402-404
    • Price, E.1    Carbone, I.2
  • 64
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard J, M Stephens and P Donnelly. 2000. Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.1    Stephens, M.2    Donnelly, P.3
  • 67
    • 84859421884 scopus 로고    scopus 로고
    • The Pleistocene glacial cycles shaped the historical demography and phylogeography of a pine fungal endophyte
    • Salas-Lizana, R., N. S. Santini, A Miranda-Perez and D. I. Pinero 2012. The Pleistocene glacial cycles shaped the historical demography and phylogeography of a pine fungal endophyte. Mycological Progress 11: 569-581.
    • (2012) Mycological Progress , vol.11 , pp. 569-581
    • Salas-Lizana, R.1    Santini, N.S.2    Miranda-Perez, A.3    Pinero, D.I.4
  • 68
    • 61649128054 scopus 로고    scopus 로고
    • Evidence for alteration of fungal endophyte community assembly by host defense compounds
    • Saunders M and L. M. Kohn. 2009. Evidence for alteration of fungal endophyte community assembly by host defense compounds. New Phytologist 182: 229-238.
    • (2009) New Phytologist , vol.182 , pp. 229-238
    • Saunders, M.1    Kohn, L.M.2
  • 70
    • 0026296677 scopus 로고
    • Endophytic Leptostroma species on Picea abies, Abies alba, and Abies balsamea: A cultural, biochemical, and numerical study
    • Sieber-Canavesi F, O Petrini and T N Sieber. 1991. Endophytic Leptostroma species on Picea abies, Abies alba, and Abies balsamea: A cultural, biochemical, and numerical study. Mycologia 83: 89-96.
    • (1991) Mycologia , vol.83 , pp. 89-96
    • Sieber-Canavesi, F.1    Petrini, O.2    Sieber, T.N.3
  • 72
    • 0000392112 scopus 로고
    • Isolation by distance in equilibrium and nonequilib-rium populations
    • Slatkin, M. 1993. Isolation by distance in equilibrium and nonequilib-rium populations. Evolution 47: 264-279.
    • (1993) Evolution , vol.47 , pp. 264-279
    • Slatkin, M.1
  • 73
    • 0025951996 scopus 로고
    • Pairwise comparisons of mitochon-drial DNA sequences in stable and exponentially growing populations
    • Slatkin M and R Hudson. 1991. Pairwise comparisons of mitochon-drial DNA sequences in stable and exponentially growing populations. Genetics 129: 555-562.
    • (1991) Genetics , vol.129 , pp. 555-562
    • Slatkin, M.1    Hudson, R.2
  • 74
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. 2006. RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 75
    • 0001887756 scopus 로고    scopus 로고
    • An overview of endophytic microbes: Endophytism defined
    • C. W. Bacon and J. F. J. White [eds.], Marcel Dekker, New York, New York, USA
    • Stone, J. K., C. W. Bacon and J. F. White. 2000. An overview of endophytic microbes: endophytism defined. In C. W. Bacon and J. F. J. White [eds.], Microbial endophytes, 3-29. Marcel Dekker, New York, New York, USA.
    • (2000) Microbial Endophytes , pp. 3-29
    • Stone, J.K.1    Bacon, C.W.2    White, J.F.3
  • 76
    • 74549151043 scopus 로고    scopus 로고
    • How robust are "Isolation with Migration" analyses to violations of the IM model? A simulation study
    • Strasburg, J. L., and L. H. Rieseberg. 2010. How robust are "Isolation with Migration" analyses to violations of the IM model? A simulation study. Molecular Biology and Evolution 27: 297-310.
    • (2010) Molecular Biology and Evolution , vol.27 , pp. 297-310
    • Strasburg, J.L.1    Rieseberg, L.H.2
  • 77
    • 1342290076 scopus 로고    scopus 로고
    • Gene flow in the endophyte Neotyphodium and implications for coevolution with Festuca arizo-nica
    • Sullivan, T. J., and S. H. Faeth. 2004. Gene flow in the endophyte Neotyphodium and implications for coevolution with Festuca arizo-nica. Molecular Ecology 13: 649-656.
    • (2004) Molecular Ecology , vol.13 , pp. 649-656
    • Sullivan, T.J.1    Faeth, S.H.2
  • 78
    • 84864094338 scopus 로고    scopus 로고
    • Community structure and preference of endophytic fungi of three woody plants in a mixed forest
    • Sun X, Q Ding, K. D. Hyde and L. D. Guo. 2012. Community structure and preference of endophytic fungi of three woody plants in a mixed forest. Fungal Ecology 5: 624-632.
    • (2012) Fungal Ecology , vol.5 , pp. 624-632
    • Sun, X.1    Ding, Q.2    Hyde, K.D.3    Guo, L.D.4
  • 79
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 80
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K and M N ei. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10: 512-526.
    • (1993) Molecular Biology and Evolution , vol.10 , pp. 512-526
    • Tamura, K.1    Ei, M.N.2
  • 81
    • 0027350124 scopus 로고
    • Notes on the definition and nomenclature of tandemly repetitive DNA sequences
    • S. D. J. Pena, R. Chakraborty, J. T. Epplen, and A. J. Jeffreys [eds.], Birkhauser, Basel, Switzerland
    • Tautz, D. 1993. Notes on the definition and nomenclature of tandemly repetitive DNA sequences. In S. D. J. Pena, R. Chakraborty, J. T. Epplen, and A. J. Jeffreys [eds.], DNA fingerprinting: State of science, 21-28. Birkhauser, Basel, Switzerland.
    • (1993) DNA Fingerprinting: State of Science , pp. 21-28
    • Tautz, D.1
  • 84
    • 16844375219 scopus 로고
    • A monographic rearrangement of Lophodermium
    • University of Illinois, Urbana, Illinois, USA
    • Tehon, L. R. 1935. A monographic rearrangement of Lophodermium. Illinois Biological Monographs 13(4). University of Illinois, Urbana, Illinois, USA.
    • (1935) Illinois Biological Monographs , vol.13 , Issue.4
    • Tehon, L.R.1
  • 85
    • 0026662698 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
    • Templeton A, K Crandall and C Singh. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132: 619-633.
    • (1992) Genetics , vol.132 , pp. 619-633
    • Templeton, A.1    Crandall, K.2    Singh, C.3
  • 89
    • 84855433737 scopus 로고    scopus 로고
    • Extensive gene flow over Europe and possible speciation over Eurasia in the ectomycorrhizal basidiomycete Laccaria amethystina complex
    • Vincenot L, K Nara, C Sthultz, J Labbé, M.-P. Dubois, L Tedersoo, F Martin and M-A. Selosse. 2012. Extensive gene flow over Europe and possible speciation over Eurasia in the ectomycorrhizal basidiomycete Laccaria amethystina complex. Molecular Ecology 21: 281-299.
    • (2012) Molecular Ecology , vol.21 , pp. 281-299
    • Vincenot, L.1    Nara, K.2    Sthultz, C.3    Labbé, J.4    Dubois, M.-P.5    Tedersoo, L.6    Martin, F.7    Selosse, M.-A.8
  • 90
    • 0021566877 scopus 로고
    • Estimating F -statistics for the analysis of population structure
    • Weir, B. S., and C. C. Cockerham. 1984. Estimating F -statistics for the analysis of population structure. Evolution 38: 1358-1370.
    • (1984) Evolution , vol.38 , pp. 1358-1370
    • Weir, B.S.1    Cockerham, C.C.2
  • 91
    • 0027948871 scopus 로고
    • Genetic diversity among natural populations of endophytic Lophodermium pinastri from Pinus resinosa
    • Wilson R, R Wheatcroft, J. D. Miller and N. J. Whitney. 1994. Genetic diversity among natural populations of endophytic Lophodermium pinastri from Pinus resinosa. Mycological Research 98: 740-744.
    • (1994) Mycological Research , vol.98 , pp. 740-744
    • Wilson, R.1    Wheatcroft, R.2    Miller, J.D.3    Whitney, N.J.4
  • 92
    • 0001771498 scopus 로고
    • Evolution in Mendelian populations
    • Wright, S. 1931. Evolution in Mendelian populations. Genetics 16: 97-0159.
    • (1931) Genetics , vol.16 , pp. 97-0159
    • Wright, S.1
  • 93
    • 84864680957 scopus 로고    scopus 로고
    • Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape
    • Zimmerman, N. B., and P. M. Vitousek. 2012. Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape. Proceedings of the National Academy of Sciences, USA 109: 13022-13027.
    • (2012) Proceedings of the National Academy of Sciences, USA , vol.109 , pp. 13022-13027
    • Zimmerman, N.B.1    Vitousek, P.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.