메뉴 건너뛰기




Volumn 109, Issue 32, 2012, Pages 13022-13027

Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape

Author keywords

Beta diversity; Mauna Loa matrix; Microbial biogeography

Indexed keywords

RAIN;

EID: 84864680957     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1209872109     Document Type: Article
Times cited : (285)

References (89)
  • 1
    • 57149093416 scopus 로고    scopus 로고
    • Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
    • Huse SM, et al. (2008) Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genet 4:e1000255.
    • (2008) PLoS Genet , vol.4
    • Huse, S.M.1
  • 6
    • 0037721460 scopus 로고    scopus 로고
    • Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field
    • DOI 10.1016/S0168-6496(03)00074-6
    • Franklin RB, Mills AL (2003) Multi-scale variation in spatial heterogeneity for microbial community structure in an eastern Virginia agricultural field. FEMS Microbiol Ecol 44:335-346. (Pubitemid 36556208)
    • (2003) FEMS Microbiology Ecology , vol.44 , Issue.3 , pp. 335-346
    • Franklin, R.B.1    Mills, A.L.2
  • 7
    • 84856788243 scopus 로고    scopus 로고
    • Microbiology of the phyllosphere: A playground for testing ecological concepts
    • Meyer KM, Leveau JHJ (2012) Microbiology of the phyllosphere: A playground for testing ecological concepts. Oecologia 168:621-629.
    • (2012) Oecologia , vol.168 , pp. 621-629
    • Meyer, K.M.1    Leveau, J.H.J.2
  • 8
    • 63449095822 scopus 로고    scopus 로고
    • eds Schnitzer S, Carson W (Blackwell Scientific, Oxford)
    • Arnold AE (2008) Tropical Forest Community Ecology, eds Schnitzer S, Carson W (Blackwell Scientific, Oxford), pp 254-271.
    • (2008) Tropical Forest Community Ecology , pp. 254-271
    • Arnold, A.E.1
  • 11
    • 70349971428 scopus 로고    scopus 로고
    • Microbiology: Life on leaves
    • Leveau JHJ (2009) Microbiology: Life on leaves. Nature 461:741-742.
    • (2009) Nature , vol.461 , pp. 741-742
    • Leveau, J.H.J.1
  • 12
    • 0033746313 scopus 로고    scopus 로고
    • The ecology and biogeography of microorganisms of plant surfaces
    • Andrews JH, Harris RF (2000) The ecology and biogeography of microorganisms of plant surfaces. Annu Rev Phytopathol 38:145-180.
    • (2000) Annu Rev Phytopathol , vol.38 , pp. 145-180
    • Andrews, J.H.1    Harris, R.F.2
  • 16
    • 80051773280 scopus 로고    scopus 로고
    • Hidden fungi, emergent properties: Endophytes and microbiomes
    • Porras-Alfaro A, Bayman P (2011) Hidden fungi, emergent properties: Endophytes and microbiomes. Annu Rev Phytopathol 49:291-315.
    • (2011) Annu Rev Phytopathol , vol.49 , pp. 291-315
    • Porras-Alfaro, A.1    Bayman, P.2
  • 17
    • 0002578688 scopus 로고
    • eds Andrews JH, Hirano SS (Springer, New York)
    • Petrini O (1991) Microbial Ecology of Leaves, eds Andrews JH, Hirano SS (Springer, New York), pp 179-197.
    • (1991) Microbial Ecology of Leaves , pp. 179-197
    • Petrini, O.1
  • 18
    • 0001518878 scopus 로고    scopus 로고
    • eds Bacon CW, White JF (Marcel Dekker, New York)
    • Wilson D (2000) Microbial Endophytes, eds Bacon CW, White JF (Marcel Dekker, New York), pp 389-420.
    • (2000) Microbial Endophytes , pp. 389-420
    • Wilson, D.1
  • 19
    • 34247175933 scopus 로고    scopus 로고
    • Diversity and host range of foliar fungal endophytes: Are tropical leaves biodiversity hotspots?
    • DOI 10.1890/05-1459
    • Arnold AE, Lutzoni F (2007) Diversity and host range of foliar fungal endophytes: Are tropical leaves biodiversity hotspots? Ecology 88:541-549. (Pubitemid 46597060)
    • (2007) Ecology , vol.88 , Issue.3 , pp. 541-549
    • Arnold, A.E.1    Lutzoni, F.2
  • 20
    • 0004273081 scopus 로고    scopus 로고
    • ed White JF (Marcel Dekker, New York)
    • Bacon CW (2000) Microbial Endophytes, ed White JF (Marcel Dekker, New York).
    • (2000) Microbial Endophytes
    • Bacon, C.W.1
  • 21
    • 0000310446 scopus 로고
    • Studies on the incidence of coniferous needle endophytes in the Pacific Northwest
    • Carroll G, Carroll F (1978) Studies on the incidence of coniferous needle endophytes in the Pacific Northwest. Can J Bot 56:3034-3043.
    • (1978) Can J Bot , vol.56 , pp. 3034-3043
    • Carroll, G.1    Carroll, F.2
  • 22
    • 0002558761 scopus 로고
    • Patterns of substrate utilization by some fungal endophytes from coniferous foliage
    • Carroll G, Petrini O (1983) Patterns of substrate utilization by some fungal endophytes from coniferous foliage. Mycologia 75:53-63.
    • (1983) Mycologia , vol.75 , pp. 53-63
    • Carroll, G.1    Petrini, O.2
  • 23
    • 0008255015 scopus 로고
    • Fungus communities associated with leaf surfaces of endemic vascular plants in Hawai'i
    • Baker G, Dunn P, Sakai W (1979) Fungus communities associated with leaf surfaces of endemic vascular plants in Hawai'i. Mycologia 71:272-292.
    • (1979) Mycologia , vol.71 , pp. 272-292
    • Baker, G.1    Dunn, P.2    Sakai, W.3
  • 24
    • 34548603274 scopus 로고    scopus 로고
    • Forest structure and fungal endophytes
    • Saikkonen K (2007) Forest structure and fungal endophytes. Fungal Biol Rev 21:67-74.
    • (2007) Fungal Biol Rev , vol.21 , pp. 67-74
    • Saikkonen, K.1
  • 25
    • 68149135199 scopus 로고    scopus 로고
    • A phylogenetic estimation of trophic transition networks for ascomycetous fungi: Are lichens cradles of symbiotrophic fungal diversification?
    • Arnold AE, et al. (2009) A phylogenetic estimation of trophic transition networks for ascomycetous fungi: Are lichens cradles of symbiotrophic fungal diversification? Syst Biol 58:283-297.
    • (2009) Syst Biol , vol.58 , pp. 283-297
    • Arnold, A.E.1
  • 26
    • 40649095452 scopus 로고    scopus 로고
    • Geographic locality and host identity shape fungal endophyte communities in cupressaceous trees
    • DOI 10.1016/j.mycres.2007.10.014, PII S0953756207002468
    • Hoffman MT, Arnold AE (2008) Geographic locality and host identity shape fungal endophyte communities in cupressaceous trees. Mycol Res 112:331-344. (Pubitemid 351374805)
    • (2008) Mycological Research , vol.112 , Issue.3 , pp. 331-344
    • Hoffman, M.T.1    Arnold, A.E.2
  • 27
    • 70349493057 scopus 로고    scopus 로고
    • Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere
    • Jumpponen A, Jones KL (2009) Massively parallel 454 sequencing indicates hyperdiverse fungal communities in temperate Quercus macrocarpa phyllosphere. New Phytol 184:438-448.
    • (2009) New Phytol , vol.184 , pp. 438-448
    • Jumpponen, A.1    Jones, K.L.2
  • 29
    • 34548608655 scopus 로고    scopus 로고
    • Fungal endophyte communities in two tropical forests of southern India: Diversity and host affiliation
    • DOI 10.1007/s11557-007-0540-2
    • Murali TS, Suryanarayanan TS, Venkatesan G (2007) Fungal endophyte communities in two tropical forests of southern India: Diversity and host affiliation. Mycol Prog 6:191-199. (Pubitemid 47402616)
    • (2007) Mycological Progress , vol.6 , Issue.3 , pp. 191-199
    • Murali, T.S.1    Suryanarayanan, T.S.2    Venkatesan, G.3
  • 30
    • 0842299263 scopus 로고    scopus 로고
    • Endophytic fungal communities in leaves of tropical forest trees: Diversity and distribution patterns
    • Suryanarayanan T, Venkatesan G, Murali TS (2003) Endophytic fungal communities in leaves of tropical forest trees: Diversity and distribution patterns. Curr Sci India 85:489-493. (Pubitemid 39160500)
    • (2003) Current Science , vol.85 , Issue.4 , pp. 489-493
    • Suryanarayanan, T.S.1    Venkatesan, G.2    Murali, T.S.3
  • 31
    • 63049115867 scopus 로고    scopus 로고
    • Diversity and evolutionary origins of fungi associated with seeds of a neotropical pioneer tree: A case study for analysing fungal environmental samples
    • U'ren JM, et al. (2009) Diversity and evolutionary origins of fungi associated with seeds of a neotropical pioneer tree: A case study for analysing fungal environmental samples. Mycol Res 113:432-449.
    • (2009) Mycol Res , vol.113 , pp. 432-449
    • U'ren, J.M.1
  • 32
    • 0001226978 scopus 로고
    • Vegetation of the Siskiyou Mountains, Oregon and California
    • Whittaker R (1960) Vegetation of the Siskiyou Mountains, Oregon and California. Ecol Monogr 30:280-338.
    • (1960) Ecol Monogr , vol.30 , pp. 280-338
    • Whittaker, R.1
  • 33
    • 78650061319 scopus 로고    scopus 로고
    • Navigating the multiple meanings of β diversity: A roadmap for the practicing ecologist
    • Anderson MJ, et al. (2011) Navigating the multiple meanings of β diversity: A roadmap for the practicing ecologist. Ecol Lett 14:19-28.
    • (2011) Ecol Lett , vol.14 , pp. 19-28
    • Anderson, M.J.1
  • 34
    • 13544268567 scopus 로고    scopus 로고
    • A new statistical approach for assessing similarity of species composition with incidence and abundance data
    • DOI 10.1111/j.1461-0248.2004.00707.x
    • Chao A, Chazdon RL, Colwell RK, Shen T-J (2005) A new statistical approach for assessing similarity of species composition with incidence and abundance data. Ecol Lett 8:148-159. (Pubitemid 40218100)
    • (2005) Ecology Letters , vol.8 , Issue.2 , pp. 148-159
    • Chao, A.1    Chazdon, R.L.2    Shen, T.-J.3
  • 35
    • 77956373482 scopus 로고    scopus 로고
    • Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics
    • Amend AS, Seifert KA, Samson R, Bruns TD (2010) Indoor fungal composition is geographically patterned and more diverse in temperate zones than in the tropics. Proc Natl Acad Sci USA 107:13748-13753.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 13748-13753
    • Amend, A.S.1    Seifert, K.A.2    Samson, R.3    Bruns, T.D.4
  • 36
    • 0042266786 scopus 로고    scopus 로고
    • Canopy cover and leaf age affect colonization by tropical fungal endophytes: Ecological pattern and process in Theobroma cacao (Malvaceae)
    • Arnold AE, Herre EA (2003) Canopy cover and leaf age affect colonization by tropical fungal endophytes: Ecological pattern and process in Theobroma cacao (Malvaceae). Mycologia 95:388-398. (Pubitemid 36914678)
    • (2003) Mycologia , vol.95 , Issue.3 , pp. 388-398
    • Arnold, A.E.1    Herre, E.A.2
  • 37
    • 77955251092 scopus 로고    scopus 로고
    • Ironing out the wrinkles in the rare biosphere through improved OTU clustering
    • Huse SM, Welch DM, Morrison HG, Sogin ML (2010) Ironing out the wrinkles in the rare biosphere through improved OTU clustering. Environ Microbiol 12:1889-1898.
    • (2010) Environ Microbiol , vol.12 , pp. 1889-1898
    • Huse, S.M.1    Welch, D.M.2    Morrison, H.G.3    Sogin, M.L.4
  • 38
    • 78149365938 scopus 로고    scopus 로고
    • Insidious effects of sequencing errors on perceived diversity in molecular surveys
    • Dickie IA (2010) Insidious effects of sequencing errors on perceived diversity in molecular surveys. New Phytol 188:916-918.
    • (2010) New Phytol , vol.188 , pp. 916-918
    • Dickie, I.A.1
  • 40
    • 34247104717 scopus 로고    scopus 로고
    • Diversity, host affinity, and distribution of seed-infecting fungi: A case study with Cecropia
    • DOI 10.1890/05-1207
    • Gallery RE, Dalling JW, Arnold AE (2007) Diversity, host affinity, and distribution of seed-infecting fungi: A case study with Cecropia. Ecology 88:582-588. (Pubitemid 46597065)
    • (2007) Ecology , vol.88 , Issue.3 , pp. 582-588
    • Gallery, R.E.1    Dalling, J.W.2    Arnold, A.E.3
  • 41
    • 79960108950 scopus 로고    scopus 로고
    • Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences
    • Gazis RO, Rehner S, Chaverri P (2011) Species delimitation in fungal endophyte diversity studies and its implications in ecological and biogeographic inferences. Mol Ecol 20:3001-3013.
    • (2011) Mol Ecol , vol.20 , pp. 3001-3013
    • Gazis, R.O.1    Rehner, S.2    Chaverri, P.3
  • 42
    • 0035712954 scopus 로고    scopus 로고
    • The magnitude of fungal diversity: The 1.5 million species estimate revisited
    • Hawksworth DL (2001) The magnitude of fungal diversity: The 1.5 million species estimate revisited. Mycol Res 105:1422-1432.
    • (2001) Mycol Res , vol.105 , pp. 1422-1432
    • Hawksworth, D.L.1
  • 43
    • 79952741082 scopus 로고    scopus 로고
    • The fungi: 1, 2, 3... 5.1 million species?
    • Blackwell M (2011) The fungi: 1, 2, 3 . . . 5.1 million species? Am J Bot 98:426-438.
    • (2011) Am J Bot , vol.98 , pp. 426-438
    • Blackwell, M.1
  • 44
    • 84860550454 scopus 로고    scopus 로고
    • Host and geographic structure of endophytic and endolichenic fungi at a continental scale
    • U'ren JM, Lutzoni F, Miadlikowska J, Laetsch AD, Arnold AE (2012) Host and geographic structure of endophytic and endolichenic fungi at a continental scale. Am J Bot 99:898-914.
    • (2012) Am J Bot , vol.99 , pp. 898-914
    • U'ren, J.M.1    Lutzoni, F.2    Miadlikowska, J.3    Laetsch, A.D.4    Arnold, A.E.5
  • 45
    • 0033028570 scopus 로고    scopus 로고
    • Birch family and environmental conditions affect endophytic fungi in leaves
    • DOI 10.1007/s004420050713
    • Elamo P, Helander M, Saloniemi I, Neuvonen S (1999) Birch family and environmental conditions affect endophytic fungi in leaves. Oecologia 118:151-156. (Pubitemid 29112043)
    • (1999) Oecologia , vol.118 , Issue.2 , pp. 151-156
    • Elamo, P.1    Helander, M.L.2    Saloniemi, I.3    Neuvonen, S.4
  • 48
    • 62249160627 scopus 로고    scopus 로고
    • Genetic structure of the polymorphic metrosideros (Myrtaceae) complex in the Hawaiian islands using nuclear microsatellite data
    • Harbaugh DT, Wagner WL, Percy DM, James HF, Fleischer RC (2009) Genetic structure of the polymorphic metrosideros (Myrtaceae) complex in the Hawaiian islands using nuclear microsatellite data. PLoS ONE 4:e4698.
    • (2009) PLoS ONE , vol.4
    • Harbaugh, D.T.1    Wagner, W.L.2    Percy, D.M.3    James, H.F.4    Fleischer, R.C.5
  • 52
    • 0027383599 scopus 로고
    • Population development of rain-forest trees on a chronosequence of Hawaiian lava flows
    • Drake D, Mueller-Dombois D (1993) Population development of rain-forest trees on a chronosequence of Hawaiian lava flows. Ecology 74:1012-1019.
    • (1993) Ecology , vol.74 , pp. 1012-1019
    • Drake, D.1    Mueller-Dombois, D.2
  • 53
    • 0002532877 scopus 로고    scopus 로고
    • Ecosystem development on Hawaiian lava flows: Biomass and species composition
    • Aplet G, Hughes RF, Vitousek PM (1998) Ecosystem development on Hawaiian lava flows: Biomass and species composition. J Veg Sci 9:17-26. (Pubitemid 28165414)
    • (1998) Journal of Vegetation Science , vol.9 , Issue.1 , pp. 17-26
    • Aplet, G.H.1    Hughes, R.F.2    Vitousek, P.M.3
  • 54
  • 55
    • 0031911125 scopus 로고    scopus 로고
    • Physiological and morphological variation in Metrosideros polymorpha, a dominant Hawaiian tree species, along an altitudinal gradient: The role of phenotypic plasticity
    • DOI 10.1007/s004420050367
    • Cordell S, Goldstein G, Mueller-Dombois D, Webb D, Vitousek PM (1998) Physiological and morphological variation in Metrosideros polymorpha, a dominant Hawaiian tree species, along an altitudinal gradient: The role of phenotypic plasticity. Oecologia 113:188-196. (Pubitemid 28111419)
    • (1998) Oecologia , vol.113 , Issue.2 , pp. 188-196
    • Cordell, S.1    Goldstein, G.2    Mueller-Dombois, D.3    Webb, D.4    Vitousek, P.M.5
  • 56
    • 34250697667 scopus 로고    scopus 로고
    • Wood vessel diameter is related to elevation and genotype in the Hawaiian tree Metrosideros polymorpha (Myrtaceae)
    • DOI 10.3732/ajb.94.5.709
    • Fisher JB, Goldstein G, Jones TJ, Cordell S (2007) Wood vessel diameter is related to elevation and genotype in the Hawaiian tree Metrosideros polymorpha (Myrtaceae). Am J Bot 94:709-715. (Pubitemid 46954977)
    • (2007) American Journal of Botany , vol.94 , Issue.5 , pp. 709-715
    • Fisher, J.B.1    Goldstein, G.2    Jones, T.J.3    Cordell, S.4
  • 57
    • 33847614872 scopus 로고    scopus 로고
    • Genetic variation in leaf pigment, optical and photosynthetic function among diverse phenotypes of Metrosideros polymorpha grown in a common garden
    • DOI 10.1007/s00442-006-0604-z
    • Martin RE, Asner GP, Sack L (2007) Genetic variation in leaf pigment, optical and photosynthetic function among diverse phenotypes of Metrosideros polymorpha grown in a common garden. Oecologia 151:387-400. (Pubitemid 46363423)
    • (2007) Oecologia , vol.151 , Issue.3 , pp. 387-400
    • Martin, R.E.1    Asner, G.P.2    Sack, L.3
  • 58
    • 0025643885 scopus 로고
    • 13C in Hawaiian metrosideros polymorpha: A case of internal resistance
    • 13C in Hawaiian metrosideros polymorpha: A case of internal resistance. Oecologia 84:362-370.
    • (1990) Oecologia , vol.84 , pp. 362-370
    • Vitousek, P.M.1    Field, C.B.2    Matson, P.A.3
  • 59
    • 0032698941 scopus 로고    scopus 로고
    • Leaf construction cost, nutrient concentration, and net CO2 assimilation of native and invasive species in Hawai'i
    • Baruch Z, Goldstein G (1999) Leaf construction cost, nutrient concentration, and net CO2 assimilation of native and invasive species in Hawai'i. Oecologia 121:183-192.
    • (1999) Oecologia , vol.121 , pp. 183-192
    • Baruch, Z.1    Goldstein, G.2
  • 60
    • 0027059426 scopus 로고
    • The Mauna Loa environmental matrix: Foliar and soil nutrients
    • Vitousek PM, Aplet G, Turner D, Lockwood J (1992) The Mauna Loa environmental matrix: Foliar and soil nutrients. Oecologia 89:372.
    • (1992) Oecologia , vol.89 , pp. 372
    • Vitousek, P.M.1    Aplet, G.2    Turner, D.3    Lockwood, J.4
  • 61
    • 0035027132 scopus 로고    scopus 로고
    • Potential ecosystem-level effects of genetic variation among populations of Metrosideros polymorpha from a soil fertility gradient in hawaii
    • DOI 10.1007/s004420000523
    • Treseder KK, Vitousek PM (2001) Potential ecosystem-level effects of genetic variation among populations of Metrosideros polymorpha from a soil fertility gradient in Hawaii. Oecologia 126:266-275. (Pubitemid 32449416)
    • (2001) Oecologia , vol.126 , Issue.2 , pp. 266-275
    • Treseder, K.K.1    Vitousek, P.M.2
  • 63
    • 0028176252 scopus 로고
    • Litter decomposition on the Mauna Loa environmental matrix, Hawai'i: Patterns, mechanisms, and models
    • Vitousek PM, Turner D, Parton W, Sanford R (1994) Litter decomposition on the Mauna Loa environmental matrix, Hawai'i: Patterns, mechanisms, and models. Ecology 75:418.
    • (1994) Ecology , vol.75 , pp. 418
    • Vitousek, P.M.1    Turner, D.2    Parton, W.3    Sanford, R.4
  • 64
    • 0030616833 scopus 로고    scopus 로고
    • Primary productivity and ecosystem development along an elevational gradient on Mauna Loa, Hawai'i
    • Raich J, Russell A, Vitousek PM (1997) Primary productivity and ecosystem development along an elevational gradient on Mauna Loa, Hawai'i. Ecology 78:707.
    • (1997) Ecology , vol.78 , pp. 707
    • Raich, J.1    Russell, A.2    Vitousek, P.M.3
  • 65
    • 0034054430 scopus 로고    scopus 로고
    • Decomposition of Metrosideros polymorpha leaf litter along elevational gradients in Hawai'i
    • Scowcroft P, Turner D, Vitousek PM (2000) Decomposition of Metrosideros polymorpha leaf litter along elevational gradients in Hawai'i. Glob Change Biol 6:73-85.
    • (2000) Glob Change Biol , vol.6 , pp. 73-85
    • Scowcroft, P.1    Turner, D.2    Vitousek, P.M.3
  • 66
    • 34547197374 scopus 로고    scopus 로고
    • Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR
    • Arnold AE, Henk DA, Eells RL, Lutzoni F, Vilgalys R (2007) Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR. Mycologia 99:185-206. (Pubitemid 47122292)
    • (2007) Mycologia , vol.99 , Issue.2 , pp. 185-206
    • Arnold, A.E.1    Henk, D.A.2    Eells, R.L.3    Lutzoni, F.4    Vilgalys, R.5
  • 67
    • 0026580754 scopus 로고
    • PCR: How to kill unwanted DNA
    • Prince AM, Andrus L (1992) PCR: How to kill unwanted DNA. Biotechniques 12:358-360.
    • (1992) Biotechniques , vol.12 , pp. 358-360
    • Prince, A.M.1    Andrus, L.2
  • 68
    • 77952243141 scopus 로고    scopus 로고
    • QIIME allows analysis of high-throughput community sequencing data
    • Caporaso JG, et al. (2010) QIIME allows analysis of high-throughput community sequencing data. Nat Methods 7:335-336.
    • (2010) Nat Methods , vol.7 , pp. 335-336
    • Caporaso, J.G.1
  • 69
    • 77954086951 scopus 로고    scopus 로고
    • PANGEA: Pipeline for analysis of next generation amplicons
    • Giongo A, et al. (2010) PANGEA: Pipeline for analysis of next generation amplicons. ISME J 4:852-861.
    • (2010) ISME J , vol.4 , pp. 852-861
    • Giongo, A.1
  • 70
    • 77956292565 scopus 로고    scopus 로고
    • An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology
    • Nilsson RH, et al. (2010) An open source software package for automated extraction of ITS1 and ITS2 from fungal ITS sequences for use in high-throughput community assays and molecular ecology. Fungal Ecol 3:284-287.
    • (2010) Fungal Ecol , vol.3 , pp. 284-287
    • Nilsson, R.H.1
  • 71
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar RC (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792-1797.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 72
  • 73
    • 69549112742 scopus 로고    scopus 로고
    • Accurate determination of microbial diversity from 454 pyrosequencing data
    • Quince C, et al. (2009) Accurate determination of microbial diversity from 454 pyrosequencing data. Nat Methods 6:639-641.
    • (2009) Nat Methods , vol.6 , pp. 639-641
    • Quince, C.1
  • 74
    • 33847702910 scopus 로고    scopus 로고
    • MEGAN analysis of metagenomic data
    • DOI 10.1101/gr.5969107
    • Huson DH, Auch AF, Qi J, Schuster SC (2007) MEGAN analysis of metagenomic data. Genome Res 17:377-386. (Pubitemid 46376747)
    • (2007) Genome Research , vol.17 , Issue.3 , pp. 377-386
    • Huson, D.H.1    Auch, A.F.2    Qi, J.3    Schuster, S.C.4
  • 75
    • 36049004436 scopus 로고    scopus 로고
    • Taxonomic reliability of DNA sequences in public sequence databases: A fungal perspective
    • Nilsson RH, et al. (2006) Taxonomic reliability of DNA sequences in public sequence databases: A fungal perspective. PLoS ONE 1:e59.
    • (2006) PLoS ONE , vol.1
    • Nilsson, R.H.1
  • 76
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, et al. (2009) Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75:7537-7541.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1
  • 78
    • 67249096511 scopus 로고    scopus 로고
    • ESPRIT: Estimating species richness using large collections of 16S rRNA pyrosequences
    • Sun Y, et al. (2009) ESPRIT: Estimating species richness using large collections of 16S rRNA pyrosequences. Nucleic Acids Res 37:e76.
    • (2009) Nucleic Acids Res , vol.37
    • Sun, Y.1
  • 79
    • 79951480123 scopus 로고    scopus 로고
    • R Development Core Team (R Foundation for Statistical Computing, Vienna, Austria)
    • R Development Core Team (2010) R: A Language and Environment for Statistical Computing (R Foundation for Statistical Computing, Vienna, Austria).
    • (2010) R: A Language and Environment for Statistical Computing
  • 80
    • 0027804103 scopus 로고
    • Nonparametric multivariate analyses of changes in community structure
    • Clarke K (1993) Nonparametric multivariate analyses of changes in community structure. Aust J Ecol 18:117-143.
    • (1993) Aust J Ecol , vol.18 , pp. 117-143
    • Clarke, K.1
  • 81
    • 77951924594 scopus 로고    scopus 로고
    • Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites
    • Jumpponen A, Jones KL, David Mattox J, Yaege C (2010) Massively parallel 454-sequencing of fungal communities in Quercus spp. ectomycorrhizas indicates seasonal dynamics in urban and rural sites. Mol Ecol 19(Suppl 1):41-53.
    • (2010) Mol Ecol , vol.19 , Issue.SUPPL. 1 , pp. 41-53
    • Jumpponen, A.1    Jones, K.L.2    David Mattox, J.3    Yaege, C.4
  • 82
    • 37649025929 scopus 로고    scopus 로고
    • The ecodist package for dissimilarity-based analysis of ecological data
    • Goslee S, Urban D (2007) The ecodist package for dissimilarity-based analysis of ecological data. J Stat Softw 22:1-19.
    • (2007) J Stat Softw , vol.22 , pp. 1-19
    • Goslee, S.1    Urban, D.2
  • 84
    • 84963034277 scopus 로고
    • Multiple-regression and correlation extensions of the Mantel test of matrix correspondence
    • Smouse P, Long J, Sokal R (1986) Multiple-regression and correlation extensions of the Mantel test of matrix correspondence. Syst Zool 35:627-632.
    • (1986) Syst Zool , vol.35 , pp. 627-632
    • Smouse, P.1    Long, J.2    Sokal, R.3
  • 85
    • 0035133496 scopus 로고    scopus 로고
    • Fitting multivariate models to community data: A comment on distance-based redundancy analysis
    • McArdle B, Anderson MJ (2001) Fitting multivariate models to community data: A comment on distance-based redundancy analysis. Ecology 82:290-297. (Pubitemid 32106404)
    • (2001) Ecology , vol.82 , Issue.1 , pp. 290-297
    • McArdle, B.H.1    Anderson, M.J.2
  • 86
    • 0032967877 scopus 로고    scopus 로고
    • Distance-based redundancy analysis: Testing multispecies responses in multifactorial ecological experiments
    • Legendre P, Anderson MJ (1999) Distance-based redundancy analysis: Testing multispecies responses in multifactorial ecological experiments. Ecol Monogr 69:1-24. (Pubitemid 29073054)
    • (1999) Ecological Monographs , vol.69 , Issue.1 , pp. 1-24
    • Legendre, P.1    Andersson, M.J.2
  • 87
    • 0002154022 scopus 로고    scopus 로고
    • A new method for non-parametric multivariate analysis of variance
    • Anderson MJ (2001) A new method for non-parametric multivariate analysis of variance. Austral Ecol 26:32-46.
    • (2001) Austral Ecol , vol.26 , pp. 32-46
    • Anderson, M.J.1
  • 88
    • 0037099954 scopus 로고    scopus 로고
    • All-scale spatial analysis of ecological data by means of principal coordinates of neighbour matrices
    • DOI 10.1016/S0304-3800(01)00501-4, PII S0304380001005014
    • Borcard D, Legendre P (2002) All-scale spatial analysis of ecological data by means of principal coordinates of neighbour matrices. Ecol Modell 153:51-68. (Pubitemid 34689042)
    • (2002) Ecological Modelling , vol.153 , Issue.1-2 , pp. 51-68
    • Borcard, D.1    Legendre, P.2
  • 89
    • 33745213566 scopus 로고    scopus 로고
    • Spatial modelling: A comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM)
    • Dray S, Legendre P, Peres-Neto PR (2006) Spatial modelling: A comprehensive framework for principal coordinate analysis of neighbour matrices (PCNM). Ecol Modell 196:483-493.
    • (2006) Ecol Modell , vol.196 , pp. 483-493
    • Dray, S.1    Legendre, P.2    Peres-Neto, P.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.