-
1
-
-
8844233221
-
Development of introgression lines of weedy rice in the background of Tongiltype rice
-
Ahn SN, Suh JP, Oh CS, Lee SJ, Suh HS (2002) Development of introgression lines of weedy rice in the background of Tongiltype rice. Rice Genet Newsl 19: 14.
-
(2002)
Rice Genet Newsl
, vol.19
, pp. 14
-
-
Ahn, S.N.1
Suh, J.P.2
Oh, C.S.3
Lee, S.J.4
Suh, H.S.5
-
2
-
-
67749088031
-
Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina Golden-Gate assay
-
Akhunov E, Nicolet C, Dvorak J (2009) Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina Golden-Gate assay. Theor Appl Genet 119: 507-517.
-
(2009)
Theor Appl Genet
, vol.119
, pp. 507-517
-
-
Akhunov, E.1
Nicolet, C.2
Dvorak, J.3
-
3
-
-
79953304894
-
Multiplexed shotgun genotyping for rapid and efficient genetic mapping
-
Andolfatto P, Davison D, Erezyilmaz D, Hu TT, Mast J, Sunayama-Morita T, Stern DL (2011) Multiplexed shotgun genotyping for rapid and efficient genetic mapping. Genome Res 21: 610-617.
-
(2011)
Genome Res
, vol.21
, pp. 610-617
-
-
Andolfatto, P.1
Davison, D.2
Erezyilmaz, D.3
Hu, T.T.4
Mast, J.5
Sunayama-Morita, T.6
Stern, D.L.7
-
4
-
-
54449098752
-
Rapid SNP discovery and genetic mapping using sequenced RAD markers
-
Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, Lewis ZA, Selker EU, Cresko WA, Johnson EA (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3: e3376.
-
(2008)
PLoS One
, vol.3
-
-
Baird, N.A.1
Etter, P.D.2
Atwood, T.S.3
Currey, M.C.4
Shiver, A.L.5
Lewis, Z.A.6
Selker, E.U.7
Cresko, W.A.8
Johnson, E.A.9
-
5
-
-
0001677717
-
Controlling the false discovery rate: A practical and powerful approach to multiple testing
-
Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc B 57: 289-300.
-
(1995)
J R Stat Soc B
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
6
-
-
80053384429
-
Whole-genome sequencing of multiple Arabidopsis thaliana populations
-
Cao J, Schneeberger K, Ossowski S, Gunther T, Bender S, Fitz J, Koenig D, Lanz C, Stegle O, Lippert C, Wang X, Ott F, Muller J, Alonso-Blanco C, Borgwardt K, Schmid KJ, Weigel D (2011) Whole-genome sequencing of multiple Arabidopsis thaliana populations. Nat Genet 43: 956-963.
-
(2011)
Nat Genet
, vol.43
, pp. 956-963
-
-
Cao, J.1
Schneeberger, K.2
Ossowski, S.3
Gunther, T.4
Bender, S.5
Fitz, J.6
Koenig, D.7
Lanz, C.8
Stegle, O.9
Lippert, C.10
Wang, X.11
Ott, F.12
Muller, J.13
Alonso-Blanco, C.14
Borgwardt, K.15
Schmid, K.J.16
Weigel, D.17
-
7
-
-
84862832825
-
Development and application of a set of breeder-friendly SNP markers for genetic analyses and molecular breeding of rice (Oryza sativa L.)
-
Chen H, He H, Zou Y, Chen W, Yu R, Liu X, Yang Y, Gao YM, Xu JL, Fan LM, Li Y, Li ZK, Deng XW (2011) Development and application of a set of breeder-friendly SNP markers for genetic analyses and molecular breeding of rice (Oryza sativa L.). Theor Appl Genet 123: 869-879.
-
(2011)
Theor Appl Genet
, vol.123
, pp. 869-879
-
-
Chen, H.1
He, H.2
Zou, Y.3
Chen, W.4
Yu, R.5
Liu, X.6
Yang, Y.7
Gao, Y.M.8
Xu, J.L.9
Fan, L.M.10
Li, Y.11
Li, Z.K.12
Deng, X.W.13
-
8
-
-
70349367522
-
Mapping of loci for pollen sterility of indica-japonica hybrids in rice (Oryza sativa L.)
-
Chen J, Jiang L, Wang C, Ikehashi H, Zhai HQ, Wan JM (2006) Mapping of loci for pollen sterility of indica-japonica hybrids in rice (Oryza sativa L.). Acta Agron Sin 32: 515-521.
-
(2006)
Acta Agron Sin
, vol.32
, pp. 515-521
-
-
Chen, J.1
Jiang, L.2
Wang, C.3
Ikehashi, H.4
Zhai, H.Q.5
Wan, J.M.6
-
9
-
-
0028151261
-
Empirical threshold values for quantitative trait mapping
-
Churchill GA, Doerge RW (1994) Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
-
(1994)
Genetics
, vol.138
, pp. 963-971
-
-
Churchill, G.A.1
Doerge, R.W.2
-
10
-
-
73449108400
-
Development and implementation of high-throughput SNP genotyping in barley
-
Close TJ, Bhat PR, Lonardi S, Wu Y, Rostoks N, Ramsay L, Druka A, Stein N, Svensson JT, Wanamaker S, Bozdag S, Roose ML, Moscou MJ, Chao S, Varshney RK, Szucs P, Sato K, Hayes PM, Matthews DE, Kleinhofs A, Muehlbauer GJ, DeYoung J, Marshall DF, Madishetty K, Fenton RD, Condamine P, Graner A, Waugh R (2009) Development and implementation of high-throughput SNP genotyping in barley. BMC Genom 10: 582.
-
(2009)
BMC Genom
, vol.10
, pp. 582
-
-
Close, T.J.1
Bhat, P.R.2
Lonardi, S.3
Wu, Y.4
Rostoks, N.5
Ramsay, L.6
Druka, A.7
Stein, N.8
Svensson, J.T.9
Wanamaker, S.10
Bozdag, S.11
Roose, M.L.12
Moscou, M.J.13
Chao, S.14
Varshney, R.K.15
Szucs, P.16
Sato, K.17
Hayes, P.M.18
Matthews, D.E.19
Kleinhofs, A.20
Muehlbauer, G.J.21
DeYoung, J.22
Marshall, D.F.23
Madishetty, K.24
Fenton, R.D.25
Condamine, P.26
Graner, A.27
Waugh, R.28
more..
-
11
-
-
15744365348
-
The construction of chromosome introgression lines of African rice (Oryza glaberrima Steud.) in the background of japonica (O. sativa L.)
-
Doi K, Iwata N, Yoshimura A (1997) The construction of chromosome introgression lines of African rice (Oryza glaberrima Steud.) in the background of japonica (O. sativa L.). Rice Genet Newsl 14: 39-41.
-
(1997)
Rice Genet Newsl
, vol.14
, pp. 39-41
-
-
Doi, K.1
Iwata, N.2
Yoshimura, A.3
-
12
-
-
17444384980
-
Developing and evaluating rice chromosome segment substitution lines
-
Doi K, Sobrizal K, Ikeda K, Sanchez PL, Kurakazu T, Nagai Y, Yoshimura A (2003) Developing and evaluating rice chromosome segment substitution lines. Proc Int Rice Congress, pp 275-287.
-
(2003)
Proc Int Rice Congress
, pp. 275-287
-
-
Doi, K.1
Sobrizal, K.2
Ikeda, K.3
Sanchez, P.L.4
Kurakazu, T.5
Nagai, Y.6
Yoshimura, A.7
-
13
-
-
79955783956
-
A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
-
Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, Buckler ES, Mitchell SE (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One 6: e19379.
-
(2011)
PLoS One
, vol.6
-
-
Elshire, R.J.1
Glaubitz, J.C.2
Sun, Q.3
Poland, J.A.4
Kawamoto, K.5
Buckler, E.S.6
Mitchell, S.E.7
-
14
-
-
2442667212
-
Highly parallel SNP genotyping
-
Fan JB, Oliphant A, Shen R, Kermani BG, Garcia F, Gunderson KL, Hansen M, Steemers F, Butler SL, Deloukas P, Galver L, Hunt S, McBride C, Bibikova M, Rubano T, Chen J, Wickham E, Doucet D, Chang W, Campbell D, Zhang B, Kruglyak S, Bentley D, Haas J, Rigault P, Zhou L, Stuelpnagel J, Chee MS (2003) Highly parallel SNP genotyping. Cold Spring Harb Symp Quant Biol 68: 69-78.
-
(2003)
Cold Spring Harb Symp Quant Biol
, vol.68
, pp. 69-78
-
-
Fan, J.B.1
Oliphant, A.2
Shen, R.3
Kermani, B.G.4
Garcia, F.5
Gunderson, K.L.6
Hansen, M.7
Steemers, F.8
Butler, S.L.9
Deloukas, P.10
Galver, L.11
Hunt, S.12
McBride, C.13
Bibikova, M.14
Rubano, T.15
Chen, J.16
Wickham, E.17
Doucet, D.18
Chang, W.19
Campbell, D.20
Zhang, B.21
Kruglyak, S.22
Bentley, D.23
Haas, J.24
Rigault, P.25
Zhou, L.26
Stuelpnagel, J.27
Chee, M.S.28
more..
-
15
-
-
0030850125
-
First steps toward a rational use of African rice, Oryza glaberrima, in rice breeding: A contig line concept
-
Ghesquiere A, Sequier J, Second G, Lorieux M (1997) First steps toward a rational use of African rice, Oryza glaberrima, in rice breeding: a contig line concept. Euphytica 96: 31-39.
-
(1997)
Euphytica
, vol.96
, pp. 31-39
-
-
Ghesquiere, A.1
Sequier, J.2
Second, G.3
Lorieux, M.4
-
16
-
-
84859117267
-
Advances in plant genome sequencing
-
Hamilton JP, Buell CR (2012) Advances in plant genome sequencing. Plant J 70: 177-190.
-
(2012)
Plant J
, vol.70
, pp. 177-190
-
-
Hamilton, J.P.1
Buell, C.R.2
-
17
-
-
66449120272
-
High-throughput genotyping by whole-genome resequencing
-
Huang X, Feng Q, Qian Q, Zhao Q, Wang L, Wang A, Guan J, Fan D, Weng Q, Huang T, Dong G, Sang T, Han B (2009) High-throughput genotyping by whole-genome resequencing. Genome Res 19: 1068-1076.
-
(2009)
Genome Res
, vol.19
, pp. 1068-1076
-
-
Huang, X.1
Feng, Q.2
Qian, Q.3
Zhao, Q.4
Wang, L.5
Wang, A.6
Guan, J.7
Fan, D.8
Weng, Q.9
Huang, T.10
Dong, G.11
Sang, T.12
Han, B.13
-
18
-
-
84867875610
-
A map of rice genome variation reveals the origin of cultivated rice
-
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B (2012a) A map of rice genome variation reveals the origin of cultivated rice. Nature 490: 497-501.
-
(2012)
Nature
, vol.490
, pp. 497-501
-
-
Huang, X.1
Kurata, N.2
Wei, X.3
Wang, Z.X.4
Wang, A.5
Zhao, Q.6
Zhao, Y.7
Liu, K.8
Lu, H.9
Li, W.10
Guo, Y.11
Lu, Y.12
Zhou, C.13
Fan, D.14
Weng, Q.15
Zhu, C.16
Huang, T.17
Zhang, L.18
Wang, Y.19
Feng, L.20
Furuumi, H.21
Kubo, T.22
Miyabayashi, T.23
Yuan, X.24
Xu, Q.25
Dong, G.26
Zhan, Q.27
Li, C.28
Fujiyama, A.29
Toyoda, A.30
Lu, T.31
Feng, Q.32
Qian, Q.33
Li, J.34
Han, B.35
more..
-
19
-
-
78049332150
-
Genome-wide association studies of 14 agronomic traits in rice landraces
-
Huang X, Wei X, Sang T, Zhao Q, Feng Q, Zhao Y, Li C, Zhu C, Lu T, Zhang Z, Li M, Fan D, Guo Y, Wang A, Wang L, Deng L, Li W, Lu Y, Weng Q, Liu K, Huang T, Zhou T, Jing Y, Lin Z, Buckler ES, Qian Q, Zhang QF, Li J, Han B (2010) Genome-wide association studies of 14 agronomic traits in rice landraces. Nat Genet 42: 961-967.
-
(2010)
Nat Genet
, vol.42
, pp. 961-967
-
-
Huang, X.1
Wei, X.2
Sang, T.3
Zhao, Q.4
Feng, Q.5
Zhao, Y.6
Li, C.7
Zhu, C.8
Lu, T.9
Zhang, Z.10
Li, M.11
Fan, D.12
Guo, Y.13
Wang, A.14
Wang, L.15
Deng, L.16
Li, W.17
Lu, Y.18
Weng, Q.19
Liu, K.20
Huang, T.21
Zhou, T.22
Jing, Y.23
Lin, Z.24
Buckler, E.S.25
Qian, Q.26
Zhang, Q.F.27
Li, J.28
Han, B.29
more..
-
20
-
-
84655176647
-
Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm
-
Huang X, Zhao Y, Wei X, Li C, Wang A, Zhao Q, Li W, Guo Y, Deng L, Zhu C, Fan D, Lu Y, Weng Q, Liu K, Zhou T, Jing Y, Si L, Dong G, Huang T, Lu T, Feng Q, Qian Q, Li J, Han B (2012b) Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm. Nat Genet 44: 32-39.
-
(2012)
Nat Genet
, vol.44
, pp. 32-39
-
-
Huang, X.1
Zhao, Y.2
Wei, X.3
Li, C.4
Wang, A.5
Zhao, Q.6
Li, W.7
Guo, Y.8
Deng, L.9
Zhu, C.10
Fan, D.11
Lu, Y.12
Weng, Q.13
Liu, K.14
Zhou, T.15
Jing, Y.16
Si, L.17
Dong, G.18
Huang, T.19
Lu, T.20
Feng, Q.21
Qian, Q.22
Li, J.23
Han, B.24
more..
-
21
-
-
42149108480
-
Highthroughput genotyping with the GoldenGate assay in the complex genome of soybean
-
Hyten DL, Song Q, Choi IY, Yoon MS, Specht JE, Matukumalli LK, Nelson RL, Shoemaker RC, Young ND, Cregan PB (2008) Highthroughput genotyping with the GoldenGate assay in the complex genome of soybean. Theor Appl Genet 116: 945-952.
-
(2008)
Theor Appl Genet
, vol.116
, pp. 945-952
-
-
Hyten, D.L.1
Song, Q.2
Choi, I.Y.3
Yoon, M.S.4
Specht, J.E.5
Matukumalli, L.K.6
Nelson, R.L.7
Shoemaker, R.C.8
Young, N.D.9
Cregan, P.B.10
-
22
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2010) Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26: 589-595.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
23
-
-
68549104404
-
The sequence alignment/map format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, Homer N, Marth G, Abecasis G, Durbin R (2009) The sequence alignment/map format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
Marth, G.7
Abecasis, G.8
Durbin, R.9
-
24
-
-
77955927186
-
Statistical properties of QTL linkage mapping in biparental genetic populations
-
Li H, Hearne S, Banziger M, Li Z, Wang J (2010) Statistical properties of QTL linkage mapping in biparental genetic populations. Heredity (Edinb) 105: 257-267.
-
(2010)
Heredity (Edinb)
, vol.105
, pp. 257-267
-
-
Li, H.1
Hearne, S.2
Banziger, M.3
Li, Z.4
Wang, J.5
-
25
-
-
0034525258
-
Gamete abortion locus detected by segregation distortion of isozyme locus Pgi1 in indica-japonica hybrids of rice (Oryza sativa L.)
-
Lu CG, Zou JS, Ikahashi H (2000) Gamete abortion locus detected by segregation distortion of isozyme locus Pgi1 in indica-japonica hybrids of rice (Oryza sativa L.). Breed Sci 50: 235-239.
-
(2000)
Breed Sci
, vol.50
, pp. 235-239
-
-
Lu, C.G.1
Zou, J.S.2
Ikahashi, H.3
-
26
-
-
70949101874
-
Molecular characterization of global maize breeding germplasm based on genome-wide single nucleotide polymorphisms
-
Lu Y, Yan J, Guimaraes CT, Taba S, Hao Z, Gao S, Chen S, Li J, Zhang S, Vivek BS, Magorokosho C, Mugo S, Makumbi D, Parentoni SN, Shah T, Rong T, Crouch JH, Xu Y (2009) Molecular characterization of global maize breeding germplasm based on genome-wide single nucleotide polymorphisms. Theor Appl Genet 120: 93-115.
-
(2009)
Theor Appl Genet
, vol.120
, pp. 93-115
-
-
Lu, Y.1
Yan, J.2
Guimaraes, C.T.3
Taba, S.4
Hao, Z.5
Gao, S.6
Chen, S.7
Li, J.8
Zhang, S.9
Vivek, B.S.10
Magorokosho, C.11
Mugo, S.12
Makumbi, D.13
Parentoni, S.N.14
Shah, T.15
Rong, T.16
Crouch, J.H.17
Xu, Y.18
-
27
-
-
26444564625
-
Genome-wide introgression lines and their use in genetic and molecular dissection of complex phenotypes in rice (Oryza sativa L.)
-
Li ZK, Fu BY, Gao YM, Xu JL, Ali J, Lafitte HR, Jiang YZ, Rey JD, Vijayakumar CH, Maghirang R, Zheng TQ, Zhu LH (2005) Genome-wide introgression lines and their use in genetic and molecular dissection of complex phenotypes in rice (Oryza sativa L.). Plant Mol Biol 59: 33-52.
-
(2005)
Plant Mol Biol
, vol.59
, pp. 33-52
-
-
Li, Z.K.1
Fu, B.Y.2
Gao, Y.M.3
Xu, J.L.4
Ali, J.5
Lafitte, H.R.6
Jiang, Y.Z.7
Rey, J.D.8
Vijayakumar, C.H.9
Maghirang, R.10
Zheng, T.Q.11
Zhu, L.H.12
-
28
-
-
85167510667
-
SNP discovery via genomic reduction, barcoding and 454-pyrosequencing in Aramanth
-
Maughan PJ, Yourstone SM, Jellen EN, Udall JA (2009) SNP discovery via genomic reduction, barcoding and 454-pyrosequencing in Aramanth. Plant Genome 2: 260-270.
-
(2009)
Plant Genome
, vol.2
, pp. 260-270
-
-
Maughan, P.J.1
Yourstone, S.M.2
Jellen, E.N.3
Udall, J.A.4
-
29
-
-
79955705898
-
Single-nucleotide polymorphism genotyping in mapping populations via genomic reduction and next-generation sequencing: Proof of concept
-
Maughan PJ, Yourstone SM, Byers RL, Smith SM, Udall JA (2010) Single-nucleotide polymorphism genotyping in mapping populations via genomic reduction and next-generation sequencing: proof of concept. Plant Genome 3: 166-178.
-
(2010)
Plant Genome
, vol.3
, pp. 166-178
-
-
Maughan, P.J.1
Yourstone, S.M.2
Byers, R.L.3
Smith, S.M.4
Udall, J.A.5
-
31
-
-
0000767870
-
Molecular mapping of the rice chromosomes
-
McCouch SR, Kochert G, Yu ZH, Wang ZY, Khush GS, Coffman WR, Tanksley SD (1988) Molecular mapping of the rice chromosomes. Theor Appl Genet 76: 815-829.
-
(1988)
Theor Appl Genet
, vol.76
, pp. 815-829
-
-
McCouch, S.R.1
Kochert, G.2
Yu, Z.H.3
Wang, Z.Y.4
Khush, G.S.5
Coffman, W.R.6
Tanksley, S.D.7
-
32
-
-
33846101405
-
The TIGR Rice Genome Annotation Resource: Improvements and new features
-
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, Childs K, Thibaud-Nissen F, Malek RL, Lee Y, Zheng L, Orvis J, Haas B, Wortman J, Buell CR (2007) The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res 35: D883-D887.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 883-887
-
-
Ouyang, S.1
Zhu, W.2
Hamilton, J.3
Lin, H.4
Campbell, M.5
Childs, K.6
Thibaud-Nissen, F.7
Malek, R.L.8
Lee, Y.9
Zheng, L.10
Orvis, J.11
Haas, B.12
Wortman, J.13
Buell, C.R.14
-
33
-
-
84871650162
-
Exploring the genetic characteristics of two recombinant inbred line populations via highdensity SNP markers in maize
-
Pan Q, Ali F, Yang X, Li J, Yan J (2012) Exploring the genetic characteristics of two recombinant inbred line populations via highdensity SNP markers in maize. PLoS One 7: e52777.
-
(2012)
PLoS One
, vol.7
-
-
Pan, Q.1
Ali, F.2
Yang, X.3
Li, J.4
Yan, J.5
-
34
-
-
84865299428
-
SNPs in stress-responsive rice genes: Validation, genotyping, functional relevance and population structure
-
Parida SK, Mukerji M, Singh AK, Singh NK, Mohapatra T (2012) SNPs in stress-responsive rice genes: validation, genotyping, functional relevance and population structure. BMC Genomics 13: 426.
-
(2012)
BMC Genomics
, vol.13
, pp. 426
-
-
Parida, S.K.1
Mukerji, M.2
Singh, A.K.3
Singh, N.K.4
Mohapatra, T.5
-
35
-
-
84861691274
-
Double digest RADseq: An inexpensive method for de novo SNP discovery and genotyping in model and non-model species
-
Peterson BK, Weber JN, Kay EH, Fisher HS, Hoekstra HE (2012) Double digest RADseq: an inexpensive method for de novo SNP discovery and genotyping in model and non-model species. PLoS One 7: e37135.
-
(2012)
PLoS One
, vol.7
-
-
Peterson, B.K.1
Weber, J.N.2
Kay, E.H.3
Fisher, H.S.4
Hoekstra, H.E.5
-
36
-
-
84857520461
-
Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach
-
Poland JA, Brown PJ, Sorrells ME, Jannink JL (2012) Development of high-density genetic maps for barley and wheat using a novel two-enzyme genotyping-by-sequencing approach. PLoS One 7: e32253.
-
(2012)
PLoS One
, vol.7
-
-
Poland, J.A.1
Brown, P.J.2
Sorrells, M.E.3
Jannink, J.L.4
-
38
-
-
53549085971
-
Rapid whole-genome mutational profiling using next-generation sequencing technologies
-
Smith DR, Quinlan AR, Peckham HE, Makowsky K, Tao W, Woolf B, Shen L, Donahue WF, Tusneem N, Stromberg MP, Stewart DA, Zhang L, Ranade SS, Warner JB, Lee CC, Coleman BE, Zhang Z, McLaughlin SF, Malek JA, Sorenson JM, Blanchard AP, Chapman J, Hillman D, Chen F, Rokhsar DS, McKernan KJ, Jeffries TW, Marth GT, Richardson PM (2008) Rapid whole-genome mutational profiling using next-generation sequencing technologies. Genome Res 18: 1638-1642.
-
(2008)
Genome Res
, vol.18
, pp. 1638-1642
-
-
Smith, D.R.1
Quinlan, A.R.2
Peckham, H.E.3
Makowsky, K.4
Tao, W.5
Woolf, B.6
Shen, L.7
Donahue, W.F.8
Tusneem, N.9
Stromberg, M.P.10
Stewart, D.A.11
Zhang, L.12
Ranade, S.S.13
Warner, J.B.14
Lee, C.C.15
Coleman, B.E.16
Zhang, Z.17
McLaughlin, S.F.18
Malek, J.A.19
Sorenson, J.M.20
Blanchard, A.P.21
Chapman, J.22
Hillman, D.23
Chen, F.24
Rokhsar, D.S.25
McKernan, K.J.26
Jeffries, T.W.27
Marth, G.T.28
Richardson, P.M.29
more..
-
39
-
-
84857646458
-
Diversity arrays technology (DArT) markers in apple for genetic linkage maps
-
Schouten HJ, van de Weg WE, Carling J, Khan SA, McKay SJ, van Kaauwen MP, Wittenberg AH, Koehorst-van Putten HJ, Noordijk Y, Gao Z, Rees DJ, Van Dyk MM, Jaccoud D, Considine MJ, Kilian A (2012) Diversity arrays technology (DArT) markers in apple for genetic linkage maps. Mol Breed 29: 645-660.
-
(2012)
Mol Breed
, vol.29
, pp. 645-660
-
-
Schouten, H.J.1
van de Weg, W.E.2
Carling, J.3
Khan, S.A.4
McKay, S.J.5
van Kaauwen, M.P.6
Wittenberg, A.H.7
Koehorst-van Putten, H.J.8
Noordijk, Y.9
Gao, Z.10
Rees, D.J.11
Van Dyk, M.M.12
Jaccoud, D.13
Considine, M.J.14
Kilian, A.15
-
40
-
-
0001313912
-
Development of Oryza glumaepatula introgression line in rice (O. sativa L.)
-
Sobrizal Ikeda K, Sanchez PL, Doi K, Angles ER, Khush GS, Yoshimura A (1999) Development of Oryza glumaepatula introgression line in rice (O. sativa L.). Rice Genet Newsl 16: 107-108.
-
(1999)
Rice Genet Newsl
, vol.16
, pp. 107-108
-
-
Sobrizal Ikeda, K.1
Sanchez, P.L.2
Doi, K.3
Angles, E.R.4
Khush, G.S.5
Yoshimura, A.6
-
41
-
-
84859160576
-
Highthroughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform
-
Thomson MJ, Zhao K, Wright M, McNally KL, Rey J, Tung CW, Reynolds A, Scheffler B, Eizenga G, McClung A et al (2012) Highthroughput single nucleotide polymorphism genotyping for breeding applications in rice using the BeadXpress platform. Mol Breed 29: 875-886.
-
(2012)
Mol Breed
, vol.29
, pp. 875-886
-
-
Thomson, M.J.1
Zhao, K.2
Wright, M.3
McNally, K.L.4
Rey, J.5
Tung, C.W.6
Reynolds, A.7
Scheffler, B.8
Eizenga, G.9
McClung, A.10
-
42
-
-
30644458994
-
Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits
-
Tian F, Li DJ, Fu Q, Zhu ZF, Fu YC, Wang XK, Sun CQ (2006) Construction of introgression lines carrying wild rice (Oryza rufipogon Griff.) segments in cultivated rice (Oryza sativa L.) background and characterization of introgressed segments associated with yield-related traits. Theor Appl Genet 112: 570-580.
-
(2006)
Theor Appl Genet
, vol.112
, pp. 570-580
-
-
Tian, F.1
Li, D.J.2
Fu, Q.3
Zhu, Z.F.4
Fu, Y.C.5
Wang, X.K.6
Sun, C.Q.7
-
43
-
-
43149110423
-
Complexity reduction of polymorphic sequences (CRoPS): A novel approach for large-scale polymorphism discovery in complex genomes
-
van Orsouw NJ, Hogers RC, Janssen A, Yalcin F, Snoeijers S, Verstege E, Schneiders H, van der Poel H, van Oeveren J, Verstegen H, van Eijk MJ (2007) Complexity reduction of polymorphic sequences (CRoPS): a novel approach for large-scale polymorphism discovery in complex genomes. PLoS One 2: e1172.
-
(2007)
PLoS One
, vol.2
-
-
van Orsouw, N.J.1
Hogers, R.C.2
Janssen, A.3
Yalcin, F.4
Snoeijers, S.5
Verstege, E.6
Schneiders, H.7
van der Poel, H.8
van Oeveren, J.9
Verstegen, H.10
van Eijk, M.J.11
-
44
-
-
0027143256
-
Multiple alleles at a new locus causing hybrid sterility between a Korean indica variety and a javanica variety in rice (Oryza sativa L.)
-
Wan J, Yanagihara S, Kato H, Ikehashi H (1993) Multiple alleles at a new locus causing hybrid sterility between a Korean indica variety and a javanica variety in rice (Oryza sativa L.). Jpn J Breed 43: 507-516.
-
(1993)
Jpn J Breed
, vol.43
, pp. 507-516
-
-
Wan, J.1
Yanagihara, S.2
Kato, H.3
Ikehashi, H.4
-
45
-
-
29244475743
-
Mapping segregation distortion loci and quantitative trait loci for spikelet sterility in rice (Oryza sativa L.)
-
Wang C, Zhu C, Zhai H, Wan J (2005) Mapping segregation distortion loci and quantitative trait loci for spikelet sterility in rice (Oryza sativa L.). Genet Res 86: 97-106.
-
(2005)
Genet Res
, vol.86
, pp. 97-106
-
-
Wang, C.1
Zhu, C.2
Zhai, H.3
Wan, J.4
-
46
-
-
79952254766
-
Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines
-
Wang L, Wang A, Huang X, Zhao Q, Dong G, Qian Q, Sang T, Han B (2011) Mapping 49 quantitative trait loci at high resolution through sequencing-based genotyping of rice recombinant inbred lines. Theor Appl Genet 122: 327-340.
-
(2011)
Theor Appl Genet
, vol.122
, pp. 327-340
-
-
Wang, L.1
Wang, A.2
Huang, X.3
Zhao, Q.4
Dong, G.5
Qian, Q.6
Sang, T.7
Han, B.8
-
47
-
-
0027519769
-
Abundance, polymorphism and genetic mapping of microsatellites in rice
-
Wu KS, Tanksley SD (1993) Abundance, polymorphism and genetic mapping of microsatellites in rice. Mol Gen Genet 241: 225-235.
-
(1993)
Mol Gen Genet
, vol.241
, pp. 225-235
-
-
Wu, K.S.1
Tanksley, S.D.2
-
48
-
-
84863539332
-
Mapping QTL for agronomic traits in breeding populations
-
Würschum T (2012) Mapping QTL for agronomic traits in breeding populations. Theor Appl Genet 125: 201-210.
-
(2012)
Theor Appl Genet
, vol.125
, pp. 201-210
-
-
Würschum, T.1
-
49
-
-
77953796079
-
Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
-
Xie W, Feng Q, Yu H, Huang X, Zhao Q, Xing Y, Yu S, Han B, Zhang Q (2010) Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc Natl Acad Sci USA 107: 10578-10583.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 10578-10583
-
-
Xie, W.1
Feng, Q.2
Yu, H.3
Huang, X.4
Zhao, Q.5
Xing, Y.6
Yu, S.7
Han, B.8
Zhang, Q.9
-
50
-
-
27744601759
-
QTLs for drought escape and tolerance identified in a set of random introgression lines of rice
-
Xu JL, Lafitte HR, Gao YM, Fu BY, Torres R, Li ZK (2005) QTLs for drought escape and tolerance identified in a set of random introgression lines of rice. Theor Appl Genet 111: 1642-1650.
-
(2005)
Theor Appl Genet
, vol.111
, pp. 1642-1650
-
-
Xu, J.L.1
Lafitte, H.R.2
Gao, Y.M.3
Fu, B.Y.4
Torres, R.5
Li, Z.K.6
-
51
-
-
77951217695
-
Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms
-
Yamamoto T, Nagasaki H, Yonemaru J, Ebana K, Nakajima M, Shibaya T, Yano M (2010) Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genomics 11: 267.
-
(2010)
BMC Genomics
, vol.11
, pp. 267
-
-
Yamamoto, T.1
Nagasaki, H.2
Yonemaru, J.3
Ebana, K.4
Nakajima, M.5
Shibaya, T.6
Yano, M.7
-
52
-
-
79952299301
-
Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers
-
Yu H, Xie W, Wang J, Xing Y, Xu C, Li X, Xiao J, Zhang Q (2011) Gains in QTL detection using an ultra-high density SNP map based on population sequencing relative to traditional RFLP/SSR markers. PLoS One 6: e17595.
-
(2011)
PLoS One
, vol.6
-
-
Yu, H.1
Xie, W.2
Wang, J.3
Xing, Y.4
Xu, C.5
Li, X.6
Xiao, J.7
Zhang, Q.8
-
53
-
-
77956295563
-
Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome
-
Zhao K, Wright M, Kimball J, Eizenga G, McClung A, Kovach M, Tyagi W, Ali ML, Tung CW, Reynolds A, Bustamante CD, McCouch SR (2010) Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS One 5: e10780.
-
(2010)
PLoS One
, vol.5
-
-
Zhao, K.1
Wright, M.2
Kimball, J.3
Eizenga, G.4
McClung, A.5
Kovach, M.6
Tyagi, W.7
Ali, M.L.8
Tung, C.W.9
Reynolds, A.10
Bustamante, C.D.11
McCouch, S.R.12
-
54
-
-
33947354522
-
Genomic regions associated with milling quality and grain shape identified in a set of random introgression lines of rice (Oryza sativa L.)
-
Zheng TQ, Xu JL, Li ZK, Zhai HQ, Wan JM (2007) Genomic regions associated with milling quality and grain shape identified in a set of random introgression lines of rice (Oryza sativa L.). Plant Breeding 126: 158-163.
-
(2007)
Plant Breeding
, vol.126
, pp. 158-163
-
-
Zheng, T.Q.1
Xu, J.L.2
Li, Z.K.3
Zhai, H.Q.4
Wan, J.M.5
-
55
-
-
85047681400
-
Improving plant breeding with exotic genetic libraries
-
Zamir D (2001) Improving plant breeding with exotic genetic libraries. Nat Rev Genet 2: 983-989.
-
(2001)
Nat Rev Genet
, vol.2
, pp. 983-989
-
-
Zamir, D.1
|