메뉴 건너뛰기




Volumn 123, Issue 6, 2011, Pages 869-879

Development and application of a set of breeder-friendly SNP markers for genetic analyses and molecular breeding of rice (Oryza sativa L.)

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOMES;

EID: 84862832825     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-011-1633-5     Document Type: Article
Times cited : (93)

References (38)
  • 1
    • 67749088031 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay
    • Akhunov E, Nicolet C, Dvorak J (2009) Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay. Theor Appl Genet 119: 507-517.
    • (2009) Theor Appl Genet , vol.119 , pp. 507-517
    • Akhunov, E.1    Nicolet, C.2    Dvorak, J.3
  • 2
    • 0019302053 scopus 로고
    • Construction of a genetic linkage map in man using restriction fragment length polymorphisms
    • Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphisms. Am J Hum Genet 32: 314-331.
    • (1980) Am J Hum Genet , vol.32 , pp. 314-331
    • Botstein, D.1    White, R.L.2    Skolnick, M.3    Davis, R.W.4
  • 4
    • 37749031256 scopus 로고    scopus 로고
    • The year of sequencing
    • Chi KR (2008) The year of sequencing. Nat Methods 5: 11-14.
    • (2008) Nat Methods , vol.5 , pp. 11-14
    • Chi, K.R.1
  • 5
    • 0032441150 scopus 로고    scopus 로고
    • Cluster analysis and display of genome-wide expression patterns
    • Eisen MB, Spellman PT, Brown PO, Botstein D (1998) Cluster analysis and display of genome-wide expression patterns. Proc Natl Acad Sci USA 95(25): 14863-14868.
    • (1998) Proc Natl Acad Sci USA , vol.95 , Issue.25 , pp. 14863-14868
    • Eisen, M.B.1    Spellman, P.T.2    Brown, P.O.3    Botstein, D.4
  • 7
    • 4644353880 scopus 로고    scopus 로고
    • An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments
    • Feltus FA, Wan J, Schulze SR, Estill JC, Jiang N, Paterson AH (2004) An SNP resource for rice genetics and breeding based on subspecies indica and japonica genome alignments. Genome Res 14: 1812-1819.
    • (2004) Genome Res , vol.14 , pp. 1812-1819
    • Feltus, F.A.1    Wan, J.2    Schulze, S.R.3    Estill, J.C.4    Jiang, N.5    Paterson, A.H.6
  • 9
    • 34250103509 scopus 로고
    • Isozymes and classification of Asian rice varieties
    • Glaszmann JC (1987) Isozymes and classification of Asian rice varieties. Theor Appl Genet 74: 21-30.
    • (1987) Theor Appl Genet , vol.74 , pp. 21-30
    • Glaszmann, J.C.1
  • 12
    • 84907150192 scopus 로고    scopus 로고
    • The map-based sequence of the rice genome
    • International Rice Genome Sequencing Project
    • International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
    • (2005) Nature , vol.436 , pp. 793-800
  • 13
    • 0033836138 scopus 로고    scopus 로고
    • Geographic distribution and multilocus organization of isozyme variation of rice (Oryza sativa L)
    • Li ZK, Rutger JN (2000) Geographic distribution and multilocus organization of isozyme variation of rice (Oryza sativa L). Theor Appl Genet 101: 379-387.
    • (2000) Theor Appl Genet , vol.101 , pp. 379-387
    • Li, Z.K.1    Rutger, J.N.2
  • 14
    • 0036981948 scopus 로고    scopus 로고
    • Genetic differentiation of wild relatives of rice as assessed by RFLP analysis
    • Lu BR, Zheng KL, Qian HR, Zhuang JY (2002) Genetic differentiation of wild relatives of rice as assessed by RFLP analysis. Theor Appl Genet 106: 101-106.
    • (2002) Theor Appl Genet , vol.106 , pp. 101-106
    • Lu, B.R.1    Zheng, K.L.2    Qian, H.R.3    Zhuang, J.Y.4
  • 19
    • 33744902325 scopus 로고    scopus 로고
    • Genome-wide searching of single-nucleotide polymorphisms among eight distantly and closely related rice cultivars (Oryza sativa L.) and a wild accession (Oryza rufipogon Griff.)
    • Monna L, Ohta R, Masuda H, Koike A, Minobe Y (2006) Genome-wide searching of single-nucleotide polymorphisms among eight distantly and closely related rice cultivars (Oryza sativa L.) and a wild accession (Oryza rufipogon Griff.). DNA Res 13: 43-51.
    • (2006) DNA Res , vol.13 , pp. 43-51
    • Monna, L.1    Ohta, R.2    Masuda, H.3    Koike, A.4    Minobe, Y.5
  • 20
    • 77955293622 scopus 로고    scopus 로고
    • Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data
    • Moragues M, Comadran J, Waugh R, Milne I, Flavell AJ, Russell JR (2010) Effects of ascertainment bias and marker number on estimations of barley diversity from high-throughput SNP genotype data. Theor Appl Genet 120: 1525-1534.
    • (2010) Theor Appl Genet , vol.120 , pp. 1525-1534
    • Moragues, M.1    Comadran, J.2    Waugh, R.3    Milne, I.4    Flavell, A.J.5    Russell, J.R.6
  • 22
    • 0036302260 scopus 로고    scopus 로고
    • Evaluation of genetic diversity in rice subspecies using microsatellite markers
    • Ni J, Colowit PM, Mackill DJ (2002) Evaluation of genetic diversity in rice subspecies using microsatellite markers. Crop Sci 42: 601-607.
    • (2002) Crop Sci , vol.42 , pp. 601-607
    • Ni, J.1    Colowit, P.M.2    Mackill, D.J.3
  • 23
    • 0031154020 scopus 로고    scopus 로고
    • Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers
    • Olufowote JO, Xu Y, Chen X, Park WD, Beachell HM, Dilday RH, Goto M, McCouch SR (1997) Comparative evaluation of within-cultivar variation of rice (Oryza sativa L.) using microsatellite and RFLP markers. Genome 40: 370-378.
    • (1997) Genome , vol.40 , pp. 370-378
    • Olufowote, J.O.1    Xu, Y.2    Chen, X.3    Park, W.D.4    Beachell, H.M.5    Dilday, R.H.6    Goto, M.7    McCouch, S.R.8
  • 25
    • 0023375195 scopus 로고
    • The neighbor-joining method: a new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 26
    • 37749031255 scopus 로고    scopus 로고
    • Next-generation sequencing transforms today's biology
    • Schuster SC (2008) Next-generation sequencing transforms today's biology. Nat Methods 5: 16-18.
    • (2008) Nat Methods , vol.5 , pp. 16-18
    • Schuster, S.C.1
  • 28
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 29
    • 0027157960 scopus 로고
    • Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
    • Tamura K, Nei M (1993) Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10(3): 512-526.
    • (1993) Mol Biol Evol , vol.10 , Issue.3 , pp. 512-526
    • Tamura, K.1    Nei, M.2
  • 31
    • 34249840289 scopus 로고
    • Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs
    • Wang ZY, Second G, Tanksley SD (1992) Polymorphism and phylogenetic relationships among species in the genus Oryza as determined by analysis of nuclear RFLPs. Theor Appl Genet 83: 565-581.
    • (1992) Theor Appl Genet , vol.83 , pp. 565-581
    • Wang, Z.Y.1    Second, G.2    Tanksley, S.D.3
  • 33
    • 77953796079 scopus 로고    scopus 로고
    • Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing
    • Xie W, Feng Q, Yu H, Huang X, Zhao Q, Xing Y, Yu S, Han B, Zhang Q (2010) Parent-independent genotyping for constructing an ultrahigh-density linkage map based on population sequencing. Proc Natl Acad Sci USA 107: 10578-10583.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 10578-10583
    • Xie, W.1    Feng, Q.2    Yu, H.3    Huang, X.4    Zhao, Q.5    Xing, Y.6    Yu, S.7    Han, B.8    Zhang, Q.9
  • 34
    • 77951217695 scopus 로고    scopus 로고
    • Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms
    • Yamamoto T, Nagasaki H, Yonemaru J, Ebana K, Nakajima M, Shibaya T, Yano M (2010) Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms. BMC Genomics 11: 267.
    • (2010) BMC Genomics , vol.11 , pp. 267
    • Yamamoto, T.1    Nagasaki, H.2    Yonemaru, J.3    Ebana, K.4    Nakajima, M.5    Shibaya, T.6    Yano, M.7
  • 37
    • 36749013576 scopus 로고    scopus 로고
    • Strategies for developing Green Super Rice
    • Zhang Q (2007) Strategies for developing Green Super Rice. Proc Natl Acad Sci USA 104: 16402-16409.
    • (2007) Proc Natl Acad Sci USA , vol.104 , pp. 16402-16409
    • Zhang, Q.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.