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Volumn 29, Issue 3, 2012, Pages 645-660

Diversity arrays technology (DArT) markers in apple for genetic linkage maps

Author keywords

Apple; DArT; Diversity; Genetic mapping; Molecular markers

Indexed keywords

ALKYLATION; FRUITS; GENES; MAPPING; POPULATION STATISTICS; THROUGHPUT;

EID: 84857646458     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-011-9579-5     Document Type: Article
Times cited : (49)

References (72)
  • 2
    • 0346748440 scopus 로고    scopus 로고
    • An improved and rapid protocol for the isolation of polysaccharide and polyphenol-free sugarcane DNA
    • Aljanabi SN, Forget L, Dookun A (1999) An improved and rapid protocol for the isolation of polysaccharide and polyphenol-free sugarcane DNA. Plant Mol Biol Rep 17: 1-8.
    • (1999) Plant Mol Biol Rep , vol.17 , pp. 1-8
    • Aljanabi, S.N.1    Forget, L.2    Dookun, A.3
  • 3
    • 34547698962 scopus 로고    scopus 로고
    • Isolation and functional analysis of a MYB transcription factor gene that is a key regulator for the development of red colouration in apple skin
    • Ban Y, Honda C, Hatsuyama Y, Igarashi M, Bessho H, Moriguchi T (2007) Isolation and functional analysis of a MYB transcription factor gene that is a key regulator for the development of red colouration in apple skin. Plant Cell Physiol 48: 958-970.
    • (2007) Plant Cell Physiol , vol.48 , pp. 958-970
    • Ban, Y.1    Honda, C.2    Hatsuyama, Y.3    Igarashi, M.4    Bessho, H.5    Moriguchi, T.6
  • 4
    • 0038192422 scopus 로고    scopus 로고
    • New findings in apple S-genotype analysis resolve previous confusion and request the re-numbering of some S-alleles
    • Broothaerts W (2003) New findings in apple S-genotype analysis resolve previous confusion and request the re-numbering of some S-alleles. Theor Appl Genet 106: 703-714.
    • (2003) Theor Appl Genet , vol.106 , pp. 703-714
    • Broothaerts, W.1
  • 6
    • 19344376494 scopus 로고    scopus 로고
    • The Vh8 locus of a new gene-for-gene interaction between Venturia inaequalis and the wild apple Malus sieversii is closely linked to the Vh2 locus in Malus pumila R12740-7A
    • Bus VGM, Laurens FND, van de Weg WE, Rusholme RL, Rikkerink EHA, Gardiner SE, Bassett HCM, Plummer KM (2005a) The Vh8 locus of a new gene-for-gene interaction between Venturia inaequalis and the wild apple Malus sieversii is closely linked to the Vh2 locus in Malus pumila R12740-7A. New Phytol 166: 1035-1049.
    • (2005) New Phytol , vol.166 , pp. 1035-1049
    • Bus, V.G.M.1    Laurens, F.N.D.2    van de Weg, W.E.3    Rusholme, R.L.4    Rikkerink, E.H.A.5    Gardiner, S.E.6    Bassett, H.C.M.7    Plummer, K.M.8
  • 8
    • 13144265800 scopus 로고    scopus 로고
    • Using microsatellite analysis to verify breeding records: a study of 'Honeycrisp' and other cold-hardy apple cultivars
    • Cabe PR, Baumgarten A, Onan K, Luby JJ, Bedford DS (2005) Using microsatellite analysis to verify breeding records: a study of 'Honeycrisp' and other cold-hardy apple cultivars. Hortic Sci 40: 15-17.
    • (2005) Hortic Sci , vol.40 , pp. 15-17
    • Cabe, P.R.1    Baumgarten, A.2    Onan, K.3    Luby, J.J.4    Bedford, D.S.5
  • 9
    • 1642423750 scopus 로고    scopus 로고
    • Quantitative trait loci (QTL) analysis reveals both broad-spectrum and isolate-specific QTL for scab resistance in an apple progeny challenged with eight isolates of Venturia inaequalis
    • Calenge F, Faure A, Goerre M, Gebhardt C, van de Weg WE, Parisi L, Durel CE (2004) Quantitative trait loci (QTL) analysis reveals both broad-spectrum and isolate-specific QTL for scab resistance in an apple progeny challenged with eight isolates of Venturia inaequalis. Phytopathology 94: 370-379.
    • (2004) Phytopathology , vol.94 , pp. 370-379
    • Calenge, F.1    Faure, A.2    Goerre, M.3    Gebhardt, C.4    van de Weg, W.E.5    Parisi, L.6    Durel, C.E.7
  • 10
    • 15344338855 scopus 로고    scopus 로고
    • Resistance gene analogues identified through the NBS-profiling method map close to major genes and QTL for disease resistance in apple
    • Calenge F, van der Linden CG, van de Weg E, Schouten HJ, van Arkel G, Denancé C, Durel CE (2005) Resistance gene analogues identified through the NBS-profiling method map close to major genes and QTL for disease resistance in apple. Theor Appl Genet 110: 660-668.
    • (2005) Theor Appl Genet , vol.110 , pp. 660-668
    • Calenge, F.1    van der Linden, C.G.2    van de Weg, E.3    Schouten, H.J.4    van Arkel, G.5    Denancé, C.6    Durel, C.E.7
  • 14
    • 44149108681 scopus 로고    scopus 로고
    • Map position and functional allelic diversity of Md-Exp7, a new putative expansin gene associated with fruit softening in apple (Malus × domestica Borkh.) and pear (Pyrus communis)
    • Costa F, Stella S, van de Weg WE, Dondini L, Pratesi D, Musacchi S, Sansavini S (2008) Map position and functional allelic diversity of Md-Exp7, a new putative expansin gene associated with fruit softening in apple (Malus × domestica Borkh.) and pear (Pyrus communis). Tree Genet Genome 4: 575-586.
    • (2008) Tree Genet Genome , vol.4 , pp. 575-586
    • Costa, F.1    Stella, S.2    van de Weg, W.E.3    Dondini, L.4    Pratesi, D.5    Musacchi, S.6    Sansavini, S.7
  • 15
    • 77954740521 scopus 로고    scopus 로고
    • QTL dynamics for fruit firmness and softening around an ethylene-dependent polygalacturonase gene in an apple mapping population
    • Costa F, Peace P, Stella S, Serra S, Musacchi S, Bazzani M, Sansavini S, van de Weg WE (2010) QTL dynamics for fruit firmness and softening around an ethylene-dependent polygalacturonase gene in an apple mapping population. J Exp Bot 61: 3029-3039.
    • (2010) J Exp Bot , vol.61 , pp. 3029-3039
    • Costa, F.1    Peace, P.2    Stella, S.3    Serra, S.4    Musacchi, S.5    Bazzani, M.6    Sansavini, S.7    van de Weg, W.E.8
  • 16
    • 14744273203 scopus 로고    scopus 로고
    • Identifying QTLs for fire-blight resistance via a European pear (Pyrus communis L.) genetic linkage map
    • Dondini L, Pierantoni L, Gaiotti F, Chiodini R, Tartarini S, Bazzi C, Sansavini S (2004) Identifying QTLs for fire-blight resistance via a European pear (Pyrus communis L.) genetic linkage map. Mol Breed 14: 407-418.
    • (2004) Mol Breed , vol.14 , pp. 407-418
    • Dondini, L.1    Pierantoni, L.2    Gaiotti, F.3    Chiodini, R.4    Tartarini, S.5    Bazzi, C.6    Sansavini, S.7
  • 17
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19: 1-15.
    • (1987) Phytochem Bull , vol.19 , pp. 1-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 20
    • 78049414227 scopus 로고    scopus 로고
    • Epigenetic reprogramming in plant and animal development
    • Feng S, Jacobsen S, Reik W (2010) Epigenetic reprogramming in plant and animal development. Science 330(6004): 622-627.
    • (2010) Science , vol.330 , Issue.6004 , pp. 622-627
    • Feng, S.1    Jacobsen, S.2    Reik, W.3
  • 26
    • 61449167834 scopus 로고    scopus 로고
    • Development of two loquat [Eriobotrya japonica (Thunb.) Lindl.] linkage maps based on AFLPs and SSR markers from different Rosaceae species
    • Gisbert AD, Martínez-Calvo J, Llácer G, Badenes ML, Romero C (2009) Development of two loquat [Eriobotrya japonica (Thunb.) Lindl.] linkage maps based on AFLPs and SSR markers from different Rosaceae species. Mol Breed 23: 523-538.
    • (2009) Mol Breed , vol.23 , pp. 523-538
    • Gisbert, A.D.1    Martínez-Calvo, J.2    Llácer, G.3    Badenes, M.L.4    Romero, C.5
  • 27
    • 0019878040 scopus 로고
    • Restriction enzyme digestion of hemimethylated DNA
    • Gruenbaum Y, Cedar H, Razin A (1981) Restriction enzyme digestion of hemimethylated DNA. Nucleic Acids Res 11: 2509-2515.
    • (1981) Nucleic Acids Res , vol.11 , pp. 2509-2515
    • Gruenbaum, Y.1    Cedar, H.2    Razin, A.3
  • 29
    • 79251619502 scopus 로고    scopus 로고
    • Genetic diversity and identity of Chinese loquat cultivars/accessions (Eriobotrya japonica) using mapped SSR markers from apple
    • doi: 10. 1007/s11105-010-0218-9
    • He Q, Li XW, Liang GL, Ji K, Guo QG, Yuan WM, Zhou GZ, Chen KS, van de Weg WE, Gao ZS (2010) Genetic diversity and identity of Chinese loquat cultivars/accessions (Eriobotrya japonica) using mapped SSR markers from apple. Plant Mol Biol Rep. doi: 10. 1007/s11105-010-0218-9.
    • (2010) Plant Mol Biol Rep
    • He, Q.1    Li, X.W.2    Liang, G.L.3    Ji, K.4    Guo, Q.G.5    Yuan, W.M.6    Zhou, G.Z.7    Chen, K.S.8    van de Weg, W.E.9    Gao, Z.S.10
  • 31
    • 0038207965 scopus 로고    scopus 로고
    • Mapping and evaluation of Malus × domestica microsatellites in apple and pear
    • Hemmat M, Weeden NF, Brown SK (2003) Mapping and evaluation of Malus × domestica microsatellites in apple and pear. J Am Soc Hort Sci 128: 515-520.
    • (2003) J Am Soc Hort Sci , vol.128 , pp. 515-520
    • Hemmat, M.1    Weeden, N.F.2    Brown, S.K.3
  • 32
    • 0031742161 scopus 로고    scopus 로고
    • Microsatellite (SSR) markers reveal genetic identities, genetic diversity and relationships in a Malus × domestica Borkh. core subset collection
    • Hokanson SC, Szewc-McFadden AK, Lamboy WF, McFerson JR (1998) Microsatellite (SSR) markers reveal genetic identities, genetic diversity and relationships in a Malus × domestica Borkh. core subset collection. Theor Appl Genet 97: 671-683.
    • (1998) Theor Appl Genet , vol.97 , pp. 671-683
    • Hokanson, S.C.1    Szewc-McFadden, A.K.2    Lamboy, W.F.3    McFerson, J.R.4
  • 33
    • 45849101688 scopus 로고    scopus 로고
    • Linkage maps of the apple (Malus × domestica Borkh.) cvs 'Ralls Janet' and 'Delicious' include newly developed EST markers
    • Igarashi M, Abe Y, Hatsuyama Y, Ueda T, Fukasawa-Akada T, Kon T, Kudo T, Sato T, Suzuki M (2008) Linkage maps of the apple (Malus × domestica Borkh.) cvs 'Ralls Janet' and 'Delicious' include newly developed EST markers. Mol Breed 22: 95-118.
    • (2008) Mol Breed , vol.22 , pp. 95-118
    • Igarashi, M.1    Abe, Y.2    Hatsuyama, Y.3    Ueda, T.4    Fukasawa-Akada, T.5    Kon, T.6    Kudo, T.7    Sato, T.8    Suzuki, M.9
  • 34
    • 0035866187 scopus 로고    scopus 로고
    • Diversity arrays: a solid state technology for sequence information independent genotyping
    • Jaccoud D, Peng K, Feinstein D, Kilian A (2001) Diversity arrays: a solid state technology for sequence information independent genotyping. Nucleic Acids Res 29: e25.
    • (2001) Nucleic Acids Res , vol.29
    • Jaccoud, D.1    Peng, K.2    Feinstein, D.3    Kilian, A.4
  • 35
    • 49749113285 scopus 로고    scopus 로고
    • Identification and stability of QTLs for fruit quality traits in apple
    • Kenis K, Keulemans J, Davey M (2008) Identification and stability of QTLs for fruit quality traits in apple. Tree Genet Genome 4: 647-661.
    • (2008) Tree Genet Genome , vol.4 , pp. 647-661
    • Kenis, K.1    Keulemans, J.2    Davey, M.3
  • 37
    • 0030802379 scopus 로고    scopus 로고
    • A simple and rapid method for isolation of high quality genomic DNA from fruit trees and conifers using PVP
    • Kim CS, Lee CH, Shin JS, Chung YS, Hyung NI (1997) A simple and rapid method for isolation of high quality genomic DNA from fruit trees and conifers using PVP. Nucleic Acids Res 25: 1085-1086.
    • (1997) Nucleic Acids Res , vol.25 , pp. 1085-1086
    • Kim, C.S.1    Lee, C.H.2    Shin, J.S.3    Chung, Y.S.4    Hyung, N.I.5
  • 38
    • 0034951607 scopus 로고    scopus 로고
    • Resolution of quantitative trait loci for mechanical measures accounting for genetic variation in fruit texture of apple (Malus pumila Mill.)
    • King GJ, Lynn JR, Dover CJ, Evans KM, Seymour GB (2001) Resolution of quantitative trait loci for mechanical measures accounting for genetic variation in fruit texture of apple (Malus pumila Mill.). Theor Appl Genet 102: 1227-1235.
    • (2001) Theor Appl Genet , vol.102 , pp. 1227-1235
    • King, G.J.1    Lynn, J.R.2    Dover, C.J.3    Evans, K.M.4    Seymour, G.B.5
  • 42
    • 0038384724 scopus 로고    scopus 로고
    • Creating a saturated reference map for the apple (Malus × domestica Borkh.) genome
    • Liebhard R, Koller B, Gianfranceschi L, Gessler C (2003b) Creating a saturated reference map for the apple (Malus × domestica Borkh.) genome. Theor Appl Genet 106: 1497-1508.
    • (2003) Theor Appl Genet , vol.106 , pp. 1497-1508
    • Liebhard, R.1    Koller, B.2    Gianfranceschi, L.3    Gessler, C.4
  • 46
    • 68849131995 scopus 로고    scopus 로고
    • Development of a marker-assisted selection system for columnar growth habit in apple breeding
    • Moriya S, Iwanami H, Kotoda N, Takahashi S, Yamamoto T, Abe K (2009) Development of a marker-assisted selection system for columnar growth habit in apple breeding. J Jpn Soc Hort Sci 78: 279-287.
    • (2009) J Jpn Soc Hort Sci , vol.78 , pp. 279-287
    • Moriya, S.1    Iwanami, H.2    Kotoda, N.3    Takahashi, S.4    Yamamoto, T.5    Abe, K.6
  • 58
    • 77955051254 scopus 로고    scopus 로고
    • Identification of a major QTL for time of initial vegetative budbreak in apple (Malus × domestica Borkh.)
    • van Dyk MM, Soeker MK, Labuschagne IF, Rees DJG (2010) Identification of a major QTL for time of initial vegetative budbreak in apple (Malus × domestica Borkh.). Tree Genet Genome 6: 489-502.
    • (2010) Tree Genet Genome , vol.6 , pp. 489-502
    • van Dyk, M.M.1    Soeker, M.K.2    Labuschagne, I.F.3    Rees, D.J.G.4
  • 61
    • 0000334475 scopus 로고
    • Identification of apple cultivars by isozyme phenotypes
    • Weeden NF, Lamb RC (1985) Identification of apple cultivars by isozyme phenotypes. J Am Soc Hort Sci 110: 509-515.
    • (1985) J Am Soc Hort Sci , vol.110 , pp. 509-515
    • Weeden, N.F.1    Lamb, R.C.2
  • 64
    • 38349089923 scopus 로고    scopus 로고
    • The genetic diversity of UK, US and Australian cultivars of Triticum aestivum measured by DArT markers and considered by genome
    • White J, Law JR, MacKay I, Chalmers KJ, Smith JSC, Kilian A, Powell W (2008) The genetic diversity of UK, US and Australian cultivars of Triticum aestivum measured by DArT markers and considered by genome. Theor Appl Genet 116: 439-453.
    • (2008) Theor Appl Genet , vol.116 , pp. 439-453
    • White, J.1    Law, J.R.2    Mackay, I.3    Chalmers, K.J.4    Smith, J.S.C.5    Kilian, A.6    Powell, W.7
  • 67
    • 18144381082 scopus 로고    scopus 로고
    • DArT for high-throughput genotyping of cassava (Manihot esculenta) and its wild relatives
    • Xia L, Peng K, Yang S, Wenzl P, de Vicente MC, Fregene M, Kilian A (2005) DArT for high-throughput genotyping of cassava (Manihot esculenta) and its wild relatives. Theor Appl Genet 110: 1092-1098.
    • (2005) Theor Appl Genet , vol.110 , pp. 1092-1098
    • Xia, L.1    Peng, K.2    Yang, S.3    Wenzl, P.4    de Vicente, M.C.5    Fregene, M.6    Kilian, A.7
  • 68
    • 33748184859 scopus 로고    scopus 로고
    • A high-throughput genomic tool: diversity array technology complementary for rice genotyping
    • Xie Y, McNally K, Li C-Y, Leung H, Zhu Y-Y (2006) A high-throughput genomic tool: diversity array technology complementary for rice genotyping. J Int Plant Biol 48: 1069-1076.
    • (2006) J Int Plant Biol , vol.48 , pp. 1069-1076
    • Xie, Y.1    McNally, K.2    Li, C.-Y.3    Leung, H.4    Zhu, Y.-Y.5
  • 70
    • 4644295853 scopus 로고    scopus 로고
    • Identification of quince varieties using SSR markers developed from pear and apple
    • Yamamoto T, Kimura T, Soejima J, Sanada T, Ban Y, Hayashi T (2004) Identification of quince varieties using SSR markers developed from pear and apple. Breed Sci 54: 239-244.
    • (2004) Breed Sci , vol.54 , pp. 239-244
    • Yamamoto, T.1    Kimura, T.2    Soejima, J.3    Sanada, T.4    Ban, Y.5    Hayashi, T.6
  • 71
    • 33746448684 scopus 로고    scopus 로고
    • Low level of genetic diversity in cultivated pigeon pea compared to its wild relatives is revealed by diversity arrays technology (DArT)
    • Yang S, Pang W, Ash G, Harper J, Carling J, Wenzl P, Huttner E, Zong X, Kilian A (2006) Low level of genetic diversity in cultivated pigeon pea compared to its wild relatives is revealed by diversity arrays technology (DArT). Theor Appl Genet 113: 585-595.
    • (2006) Theor Appl Genet , vol.113 , pp. 585-595
    • Yang, S.1    Pang, W.2    Ash, G.3    Harper, J.4    Carling, J.5    Wenzl, P.6    Huttner, E.7    Zong, X.8    Kilian, A.9
  • 72
    • 44149121698 scopus 로고    scopus 로고
    • Md-ACS1 and Md-ACO1 genotyping of apple (Malus × domestica Borkh.) breeding parents and suitability for marker-assisted selection
    • Zhu Y, Barrett BH (2008) Md-ACS1 and Md-ACO1 genotyping of apple (Malus × domestica Borkh.) breeding parents and suitability for marker-assisted selection. Tree Genet Genome 4: 555-562.
    • (2008) Tree Genet Genome , vol.4 , pp. 555-562
    • Zhu, Y.1    Barrett, B.H.2


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