-
1
-
-
0035781190
-
Molecular biology of fruit maturation and ripening
-
Giovannoni J (2001) Molecular biology of fruit maturation and ripening. Ann Rev Plant Physiol Plant Mol Biol 52: 725-749.
-
(2001)
Ann Rev Plant Physiol Plant Mol Biol
, vol.52
, pp. 725-749
-
-
Giovannoni, J.1
-
2
-
-
3042850914
-
Signal transduction systems regulating fruit ripening
-
DOI 10.1016/j.tplants.2004.05.004, PII S1360138504001311
-
Adams-Phillips L, Barry C, Giovannoni J (2004) Signal transduction systems regulating fruit ripening. Trends Plant Sci 9: 331-8. (Pubitemid 38871432)
-
(2004)
Trends in Plant Science
, vol.9
, Issue.7
, pp. 331-338
-
-
Adams-Phillips, L.1
Barry, C.2
Giovannoni, J.3
-
3
-
-
84861199635
-
Genetic and genomic approaches for R-gene mediated disease resistance in tomato: Retrospects and prospects
-
Ercolano MR, Sanseverino W, Carli P, Ferriello F, Frusciante L (2012) Genetic and genomic approaches for R-gene mediated disease resistance in tomato: retrospects and prospects. Plant Cell Rep 31: 973-85.
-
(2012)
Plant Cell Rep
, vol.31
, pp. 973-985
-
-
Ercolano, M.R.1
Sanseverino, W.2
Carli, P.3
Ferriello, F.4
Frusciante, L.5
-
4
-
-
0000938865
-
Cell wall metabolism in ripening fruit. V. analysis of cell wall synthesis in ripening tomato pericarp tissue using a D-[U-13C]glucose tracer and gas chromatography-mass spectrometry
-
Greve LC, Labavitch JM (1991) Cell Wall Metabolism in Ripening Fruit: V. Analysis of Cell Wall Synthesis in Ripening Tomato Pericarp Tissue Using a d-[U-C] Glucose Tracer and Gas Chromatography-Mass Spectrometry. Plant Physiol 97: 1456-1461. (Pubitemid 21914387)
-
(1991)
Plant Physiology
, vol.97
, Issue.4
, pp. 1456-1461
-
-
Greve, L.C.1
Labavitch, J.M.2
-
5
-
-
0000597474
-
Polygalacturonase in tomato fruits and the induction of ripening
-
Brady C, MacAlpine G, McGlassen WB (1982) Polygalacturonase in tomato fruits and the induction of ripening. Aust J Plant Physiol 9: 171-178.
-
(1982)
Aust J Plant Physiol
, vol.9
, pp. 171-178
-
-
Brady, C.1
MacAlpine, G.2
McGlassen, W.B.3
-
6
-
-
78249257577
-
Seed cell wall storage polysaccharides: Models to understand cell wall biosynthesis and degradation
-
Buckeridge MS (2010) Seed cell wall storage polysaccharides: models to understand cell wall biosynthesis and degradation. Plant Physiol 154: 1017-1023.
-
(2010)
Plant Physiol
, vol.154
, pp. 1017-1023
-
-
Buckeridge, M.S.1
-
7
-
-
0027745893
-
Map-based cloning of a protein kinase gene conferring disease resistance in tomato
-
Martin GB, Brommonschenkel SH, Chunwongse J, Frary A, Ganal MW, et al. (1993) Map-based cloning of a protein kinase gene conferring disease resistance in tomato. Science 262: 1432-1436. (Pubitemid 24035063)
-
(1993)
Science
, vol.262
, Issue.5138
, pp. 1432-1436
-
-
Martin, G.B.1
Brommonschenkel, S.H.2
Chunwongse, J.3
Frary, A.4
Ganal, M.W.5
Spivey, R.6
Wu, T.7
Earle, E.D.8
Tanksley, S.D.9
-
8
-
-
0009816292
-
Genetic Activity in a Heterochromatic Chromosome Segment of the Tomato
-
Khush GS, Rick CM, Robinson RW (1964) Genetic Activity in a Heterochromatic Chromosome Segment of the Tomato. Science 145: 1432-1434.
-
(1964)
Science
, vol.145
, pp. 1432-1434
-
-
Khush, G.S.1
Rick, C.M.2
Robinson, R.W.3
-
9
-
-
0036008764
-
Tomato mutants as tools for functional genomics
-
DOI 10.1016/S1369-5266(02)00237-6
-
Emmanuel E, Levy AA (2002) Tomato mutants as tools for functional genomics. Curr Opin Plant Biol 5: 112-117. (Pubitemid 34190376)
-
(2002)
Current Opinion in Plant Biology
, vol.5
, Issue.2
, pp. 112-117
-
-
Emmanuel, E.1
Levy, A.A.2
-
10
-
-
85047681400
-
Improving plant breeding with exotic genetic libraries
-
Zamir D (2001) Improving plant breeding with exotic genetic libraries. Nat Rev Genet 2: 983-989.
-
(2001)
Nat Rev Genet
, vol.2
, pp. 983-989
-
-
Zamir, D.1
-
11
-
-
84863693752
-
The tomato genome sequence provides insights into fleshy fruit evolution
-
Tomato Genome Consortium
-
Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature 485: 635-641.
-
(2012)
Nature
, vol.485
, pp. 635-641
-
-
-
12
-
-
78651327629
-
The Sol Genomics Network (solgenomics.Net): Growing tomatoes using Perl
-
Bombarely A, Menda N, Tecle IY, Buels RM, Strickler S, et al. (2011) The Sol Genomics Network (solgenomics.net): growing tomatoes using Perl. Nucleic Acids Res 39: D1149-55.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Bombarely, A.1
Menda, N.2
Tecle, I.Y.3
Buels, R.M.4
Strickler, S.5
-
13
-
-
73349102837
-
SolEST database: A "one-stop shop" approach to the study of Solanaceae transcriptomes
-
D'Agostino N, Traini A, Frusciante L, Chiusano ML (2009) SolEST database: a "one-stop shop" approach to the study of Solanaceae transcriptomes. BMC Plant Biol 9: 142.
-
(2009)
BMC Plant Biol
, vol.9
, pp. 142
-
-
D'Agostino, N.1
Traini, A.2
Frusciante, L.3
Chiusano, M.L.4
-
14
-
-
71049119346
-
MoTo DB: A metabolic database for tomato
-
Grennan AK (2009) MoTo DB: a metabolic database for tomato. Plant Physiol 151: 1701-1702.
-
(2009)
Plant Physiol
, vol.151
, pp. 1701-1702
-
-
Grennan, A.K.1
-
15
-
-
78651325241
-
Tomato Functional Genomics Database: A comprehensive resource and analysis package for tomato functional genomics
-
Fei Z, Joung J, Tang X, Zheng Y, Huang M, et al. (2011) Tomato Functional Genomics Database: a comprehensive resource and analysis package for tomato functional genomics. Nucleic Acids Research 39: D1156-D1163.
-
(2011)
Nucleic Acids Research
, vol.39
-
-
Fei, Z.1
Joung, J.2
Tang, X.3
Zheng, Y.4
Huang, M.5
-
16
-
-
78049455414
-
miSolRNA: A tomato micro RNA relational database
-
Bazzini AA, Asís R, Gonzalez V, Bassi S, Conte M, et al. (2010) miSolRNA: A tomato micro RNA relational database. BMC Plant Biology 10: 240.
-
(2010)
BMC Plant Biology
, vol.10
, pp. 240
-
-
Bazzini, A.A.1
Asís, R.2
Gonzalez, V.3
Bassi, S.4
Conte, M.5
-
17
-
-
79951560192
-
TOMATOMA: A novel tomato mutant database distributing Micro-Tom mutant collections
-
Saito T, Ariizumi T, Okabe Y, Asamizu E, Hiwasa-Tanase K, et al. (2011) TOMATOMA: a novel tomato mutant database distributing Micro-Tom mutant collections. Plant Cell Physiol 52: 283-296.
-
(2011)
Plant Cell Physiol
, vol.52
, pp. 283-296
-
-
Saito, T.1
Ariizumi, T.2
Okabe, Y.3
Asamizu, E.4
Hiwasa-Tanase, K.5
-
18
-
-
84876925570
-
DNA marker applications to molecular genetics and genomics in tomato
-
Shirasawa K, Hirakawa H (2013) DNA marker applications to molecular genetics and genomics in tomato. Breed Sci 63: 21-30.
-
(2013)
Breed Sci
, vol.63
, pp. 21-30
-
-
Shirasawa, K.1
Hirakawa, H.2
-
19
-
-
78650518016
-
Microsatellites markers: An overview of the recent progress in Plants
-
Kalia RK, Rai MK, Kalia S, Singh R, Dhawan AK (2011) Microsatellites markers: an overview of the recent progress in Plants. Euphytica 177: 309-334.
-
(2011)
Euphytica
, vol.177
, pp. 309-334
-
-
Kalia, R.K.1
Rai, M.K.2
Kalia, S.3
Singh, R.4
Dhawan, A.K.5
-
20
-
-
0036793625
-
QTL analysis of fruit quality in fresh market tomato: A few chromosome regions control the variation of sensory and instrumental traits
-
Causse M, Saliba-Colombani V, Lecomte L, Duffé P, Rousselle P, et al. (2002), QTL analysis of fruit quality in fresh market tomato: a few chromosome regions control the variation of sensory and instrumental traits. J Exp Bot 53: 2089-2098. (Pubitemid 35181199)
-
(2002)
Journal of Experimental Botany
, vol.53
, Issue.377
, pp. 2089-2098
-
-
Causse, M.1
Saliba-Colombani, V.2
Lecomte, L.3
Duffe, P.4
Rousselle, P.5
Buret, M.6
-
21
-
-
33846283385
-
The evolution of gene regulation by transcription factors and microRNAs
-
DOI 10.1038/nrg1990, PII NRG1990
-
Chen K, Rajewsky N (2007) The evolution of gene regulation by transcription factors and microRNAs. Nat Rev Genet 8: 93-103. (Pubitemid 46122839)
-
(2007)
Nature Reviews Genetics
, vol.8
, Issue.2
, pp. 93-103
-
-
Chen, K.1
Rajewsky, N.2
-
23
-
-
79955705363
-
MicroRNA networks and developmental plasticity in plants
-
Rubio-Somoza I, Weigel D (2011) MicroRNA networks and developmental plasticity in plants. Trends Plant Sci 16: 258-264.
-
(2011)
Trends Plant Sci
, vol.16
, pp. 258-264
-
-
Rubio-Somoza, I.1
Weigel, D.2
-
24
-
-
84860126087
-
A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs
-
Shivaprasad PV, Chen HM, Patel K, Bond DM, Santos BA, et al. (2012) A microRNA superfamily regulates nucleotide binding site-leucine-rich repeats and other mRNAs. Plant Cell 24: 859-874.
-
(2012)
Plant Cell
, vol.24
, pp. 859-874
-
-
Shivaprasad, P.V.1
Chen, H.M.2
Patel, K.3
Bond, D.M.4
Santos, B.A.5
-
25
-
-
84865022311
-
Primer3-new capabilities and interfaces
-
Untergasser A, Cutcutache I, Koressaar T, Ye J, Faircloth BC, et al. (2012) Primer3-new capabilities and interfaces. Nucleic Acids Res 40: e115.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Untergasser, A.1
Cutcutache, I.2
Koressaar, T.3
Ye, J.4
Faircloth, B.C.5
-
26
-
-
70449353650
-
CMap 1.01: A comparative mapping application for the Internet
-
Youens-Clark K, Faga B, Yap IV, Stein L, Ware D (2009) CMap 1.01: a comparative mapping application for the Internet. Bioinformatics 25: 3040-3042.
-
(2009)
Bioinformatics
, vol.25
, pp. 3040-3042
-
-
Youens-Clark, K.1
Faga, B.2
Yap, I.V.3
Stein, L.4
Ware, D.5
-
27
-
-
84856468953
-
NGS QC Toolkit: A toolkit for quality control of next generation sequencing data
-
Patel RK, Jain M (2012) NGS QC Toolkit: a toolkit for quality control of next generation sequencing data. PLoS One 7: e30619.
-
(2012)
PLoS One
, vol.7
-
-
Patel, R.K.1
Jain, M.2
-
28
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9: 357-3599.
-
(2012)
Nat Methods
, vol.9
, pp. 357-3599
-
-
Langmead, B.1
Salzberg, S.L.2
-
29
-
-
68549104404
-
The Sequence alignment/map (SAM) format and SAMtools
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. (2009) The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics 25: 2078-2079.
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
30
-
-
84883212289
-
Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis
-
Karlova R, van Haarst JC, Maliepaard C, van de Geest H, Bovy AG, et al. (2013) Identification of microRNA targets in tomato fruit development using high-throughput sequencing and degradome analysis. J Exp Bot 64: 1863-1878.
-
(2013)
J Exp Bot
, vol.64
, pp. 1863-1878
-
-
Karlova, R.1
Van Haarst, J.C.2
Maliepaard, C.3
Van De Geest, H.4
Bovy, A.G.5
-
31
-
-
78651293534
-
miRBase: Integrating microRNA annotation and deep-sequencing data
-
Kozomara A, Griffiths-Jones S (2011) miRBase: integrating microRNA annotation and deep-sequencing data. Nucleic Acids Res 39: D152-157.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Kozomara, A.1
Griffiths-Jones, S.2
-
32
-
-
84876010752
-
The tomato yellow leaf curl virus resistance genes Ty-1 and Ty-3 are allelic and code for DFDGD-class RNA-dependent RNA polymerases
-
Verlaan MG, Hutton SF, Ibrahem RM, Kormelink R, Visser RG, et al. (2013) The tomato yellow leaf curl virus resistance genes Ty-1 and Ty-3 are allelic and code for DFDGD-class RNA-dependent RNA polymerases. PLoS Genet 9: e1003399.
-
(2013)
PLoS Genet
, vol.9
-
-
Verlaan, M.G.1
Hutton, S.F.2
Ibrahem, R.M.3
Kormelink, R.4
Visser, R.G.5
-
34
-
-
0345874794
-
The tomato resistance protein Bs4 is a predicted non-nuclear TIR-NB-LRR protein that mediates defense responses to severely truncated derivatives of AvrBs4 and overexpressed AvrBs3
-
DOI 10.1046/j.1365-313X.2003.01937.x
-
Schornack S, Ballvora A, Gürlebeck D, Gürlebeck D, Peart J, et al. (2004) The tomato resistance protein Bs4 is a predicted non-nuclear TIR-NB-LRR protein that mediates defense responses to severely truncated derivatives of AvrBs4 and overexpressed AvrBs3. Plant Jr 37: 46-60. (Pubitemid 38078264)
-
(2004)
Plant Journal
, vol.37
, Issue.1
, pp. 46-60
-
-
Schornack, S.1
Ballvora, A.2
Gurlebeck, D.3
Peart, J.4
Ganal, M.5
Baker, B.6
Bonas, U.7
Lahaye, T.8
-
35
-
-
0028152968
-
Isolation of the tomato Cf-9 gene for resistance to Cladosporium fulvum by transposon tagging
-
Jones DA, Thomas CM, Hammondkosack KE, Balintkurti PJ, Jones JDG (1994) Isolation of the tomato Cf-9 gene for resistance to Cladosporium fulvum by transposon tagging. Science 266: 789-793. (Pubitemid 24359284)
-
(1994)
Science
, vol.266
, Issue.5186
, pp. 789-793
-
-
Jones, D.A.1
Thomas, C.M.2
Hammond-Kosack, K.E.3
Balint-Kurti, P.J.4
Jonest, J.D.G.5
-
36
-
-
14344270401
-
Tomato Ve disease resistance genes encode cell surface-like receptors
-
DOI 10.1073/pnas.091114198
-
Kawchuk LM, Hachey J, Lynch DR, Kulcsar F, van Rooijen G, et al. (2001) Tomato Ve disease resistance genes encode cell surface-like receptors. Proc Natl Acad Sci USA 98: 6511-6515. (Pubitemid 32488268)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.11
, pp. 6511-6515
-
-
Kawchuk, L.M.1
Hachey, J.2
Lynch, D.R.3
Kulcsar, F.4
Van Rooijen, G.5
Waterer, D.R.6
Robertson, A.7
Kokko, E.8
Byers, R.9
Howard, R.J.10
Fischer, R.11
Prufer, D.12
-
37
-
-
0032144421
-
The root knot nematode resistance gene Mi from tomato is a member of the leucine zipper, nucleotide binding, leucine-rich repeat family of plant genes
-
DOI 10.1105/tpc.10.8.1307
-
Milligan SB, Bodeau J, Yaghoobi J, Kaloshian I, Zabel P, et al. (1998) The root knot nematode resistance gene Mi from tomato is a member of the leucine zipper, nucleotide binding, leucine-rich repeat family of plant genes. Plant Cell 10: 1307-1319. (Pubitemid 28542166)
-
(1998)
Plant Cell
, vol.10
, Issue.8
, pp. 1307-1319
-
-
Milligan, S.B.1
Bodeau, J.2
Yaghoobi, J.3
Kaloshian, I.4
Zabel, P.5
Williamson, V.M.6
-
38
-
-
79961123152
-
RSEM: Accurate transcript quantification from RNA-Seq data with or without a reference genome
-
Bo L, Dewey CN (2011) RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome. BMC Bioinformatics 12: 323.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 323
-
-
Bo, L.1
Dewey, C.N.2
-
39
-
-
33747894577
-
TM4 microarray software suite
-
Saeed AI, Bhagabati NK, Braisted JC, Liang W, Sharov V, et al (2006) TM4 microarray software suite. Methods in Enzymology 411: 134-193.
-
(2006)
Methods in Enzymology
, vol.411
, pp. 134-193
-
-
Saeed, A.I.1
Bhagabati, N.K.2
Braisted, J.C.3
Liang, W.4
Sharov, V.5
-
40
-
-
0037311919
-
TM4: A free, open-source system for microarray data management and analysis
-
Saeed AI, Sharov V, White J, Li J, Liang W, et al. (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34(2): 374-8. (Pubitemid 36184095)
-
(2003)
BioTechniques
, vol.34
, Issue.2
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
Bhagabati, N.6
Braisted, J.7
Klapa, M.8
Currier, T.9
Thiagarajan, M.10
Sturn, A.11
Snuffin, M.12
Rezantsev, A.13
Popov, D.14
Ryltsov, A.15
Kostukovich, E.16
Borisovsky, I.17
Liu, Z.18
Vinsavich, A.19
Trush, V.20
Quackenbush, J.21
more..
-
41
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders S, Huber W (2010) Differential expression analysis for sequence count data. Genome Biol 11: R106.
-
(2010)
Genome Biol
, vol.11
-
-
Anders, S.1
Huber, W.2
-
42
-
-
71049115687
-
A snapshot of the emerging tomato genome sequence
-
Mueller LA, Lankhorst RK, Tanksley SD, Giovannoni JJ, White R, et al. (2009) A snapshot of the emerging tomato genome sequence. Plant Genome 2: 78-92.
-
(2009)
Plant Genome
, vol.2
, pp. 78-92
-
-
Mueller, L.A.1
Lankhorst, R.K.2
Tanksley, S.D.3
Giovannoni, J.J.4
White, R.5
-
43
-
-
0001214694
-
RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon
-
Miller JC, Tanksley SD (1990) RFLP analysis of phylogenetic relationships and genetic variation in the genus Lycopersicon. Theoretical and Applied Genetics 80: 437-448.
-
(1990)
Theoretical and Applied Genetics
, vol.80
, pp. 437-448
-
-
Miller, J.C.1
Tanksley, S.D.2
-
44
-
-
2942690149
-
The Genetic, Developmental, and Molecular Bases of Fruit Size and Shape Variation in Tomato
-
Tanksley SD (2004) The Genetic, Developmental, and Molecular Bases of Fruit Size and Shape Variation in Tomato, The Plant Cell 16: S181-S189.
-
(2004)
The Plant Cell
, vol.16
-
-
Tanksley, S.D.1
-
45
-
-
0034617236
-
fw2.2: A quantitative trait locus key to the evolution of tomato fruit size
-
DOI 10.1126/science.289.5476.85
-
Frary A, Nesbitt TC, Grandillo S, Knaap E, Cong B et al. (2000) fw2.2: a quantitative trait locus key to the evolution of tomato fruit size. Science 289: 85-88. (Pubitemid 30463294)
-
(2000)
Science
, vol.289
, Issue.5476
, pp. 85-88
-
-
Frary, A.1
Nesbitt, T.C.2
Frary, A.3
Grandillo, S.4
Van Der, K.E.5
Cong, B.6
Liu, J.7
Meller, J.8
Elber, R.9
Alpert, K.B.10
Tanksley, S.D.11
-
47
-
-
84880514765
-
Genetic challenges of flavor improvement in tomato
-
Klee HJ, Tieman DM (2013) Genetic challenges of flavor improvement in tomato. Trends in Genetics 29: 257-262.
-
(2013)
Trends in Genetics
, vol.29
, pp. 257-262
-
-
Klee, H.J.1
Tieman, D.M.2
-
48
-
-
84879984347
-
Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato
-
Koenig D, Jiménez-Gómez JM, Kimura S, Fulop D, Chitwood DH et al. (2013) Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato. Proc Natl Acad Sci USA 110: E2655-62.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
-
-
Koenig, D.1
Jiménez-Gómez, J.M.2
Kimura, S.3
Fulop, D.4
Chitwood, D.H.5
|