-
1
-
-
84878507809
-
Plant virus ecology
-
Roossinck MJ. 2013. Plant virus ecology. PLoS Pathog. 9:e1003304. http: //dx.doi.org/10.1371/journal.ppat.1003304.
-
(2013)
PLoS Pathog.
, vol.9
-
-
Roossinck, M.J.1
-
2
-
-
0031056933
-
Plants combat infection by gene silencing
-
Covey SN, Al-Kaff NS, La´ngara A, Turner DS. 1997. Plants combat infection by gene silencing. Nature 385:781-782. http://dx.doi.org/10 .1038/385781a0.
-
(1997)
Nature
, vol.385
, pp. 781-782
-
-
Covey, S.N.1
Al-Kaff, N.S.2
La´ngara, A.3
Turner, D.S.4
-
3
-
-
0032726038
-
Gene silencing without DNA. RNA-mediated cross-protection between viruses
-
Ratcliff FG, MacFarlane SA, Baulcombe DC. 1999. Gene silencing without DNA. RNA-mediated cross-protection between viruses. Plant Cell 11:1207-1216.
-
(1999)
Plant Cell
, vol.11
, pp. 1207-1216
-
-
Ratcliff, F.G.1
MacFarlane, S.A.2
Baulcombe, D.C.3
-
4
-
-
58449134534
-
Small silencing RNAs: an expanding universe
-
Ghildiyal M, Zamore PD. 2009. Small silencing RNAs: an expanding universe. Nat. Rev. Genet. 10:94-108. http://dx.doi.org/10.1038/nrg2504.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 94-108
-
-
Ghildiyal, M.1
Zamore, P.D.2
-
5
-
-
60149088848
-
Origins and mechanisms of miRNAs and siRNAs
-
Carthew RW, Sontheimer EJ. 2009. Origins and mechanisms of miRNAs and siRNAs. Cell 136:642-655. http://dx.doi.org/10.1016/j.cell.2009.01 .035.
-
(2009)
Cell
, vol.136
, pp. 642-655
-
-
Carthew, R.W.1
Sontheimer, E.J.2
-
6
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law JA, Jacobsen SE. 2010. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat. Rev. Genet. 11: 204-220. http://dx.doi.org/10.1038/nrg2719.
-
(2010)
Nat. Rev. Genet.
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
7
-
-
34547587566
-
Antiviral immunity directed by small RNAs
-
Ding SW, Voinnet O. 2007. Antiviral immunity directed by small RNAs. Cell 130:413-426. http://dx.doi.org/10.1016/j.cell.2007.07.039.
-
(2007)
Cell
, vol.130
, pp. 413-426
-
-
Ding, S.W.1
Voinnet, O.2
-
8
-
-
84883454804
-
Reconstructing de novo silencing of an active plant retrotransposon
-
Mari´-Ord´ñez A, Marchais A, Etcheverry M, Martin A, Colot V, Voinnet O. 2013. Reconstructing de novo silencing of an active plant retrotransposon. Nat. Genet. 45:1029 -1039. http://dx.doi.org/10.1038 /ng.2703.
-
(2013)
Nat. Genet.
, vol.45
, pp. 1029 -1039
-
-
Mari´-Ordo´ñez, A.1
Marchais, A.2
Etcheverry, M.3
Martin, A.4
Colot, V.5
Voinnet, O.6
-
9
-
-
84881046426
-
Proposed mechanism for the initiation of transposable element silencing by the RDR6-directed DNA methylation pathway
-
Panda K, Slotkin RK. 2013. Proposed mechanism for the initiation of transposable element silencing by the RDR6-directed DNA methylation pathway. Plant Signal. Behav. 8:e25206. http://dx.doi.org/10.4161/psb .25206.
-
(2013)
Plant Signal. Behav.
, vol.8
-
-
Panda, K.1
Slotkin, R.K.2
-
10
-
-
77949337274
-
RNA silencing directed against geminiviruses: post-transcriptional and epigenetic components
-
Raja P, Wolf JN, Bisaro DM. 2010. RNA silencing directed against geminiviruses: post-transcriptional and epigenetic components. Biochim. Biophys. Acta 1799:337-351. http://dx.doi.org/10.1016/j.bbagrm.2010.01 .004.
-
(2010)
Biochim. Biophys. Acta
, vol.1799
, pp. 337-351
-
-
Raja, P.1
Wolf, J.N.2
Bisaro, D.M.3
-
11
-
-
0032571483
-
Transcriptional and posttranscriptional plant gene silencing in response to a pathogen
-
Al-Kaff NS, Covey SN, Kreike MM, Page AM, Pinder R, Dale PJ. 1998. Transcriptional and posttranscriptional plant gene silencing in response to a pathogen. Science 279:2113-2115. http://dx.doi.org/10.1126/science .279.5359.2113.
-
(1998)
Science
, vol.279
, pp. 2113-2115
-
-
Al-Kaff, N.S.1
Covey, S.N.2
Kreike, M.M.3
Page, A.M.4
Pinder, R.5
Dale, P.J.6
-
12
-
-
80655143447
-
Conformationselective methylation of geminivirus DNA
-
Paprotka T, Deuschle K, Metzler V, Jeske H. 2011. Conformationselective methylation of geminivirus DNA. J. Virol. 85:12001-12012. http: //dx.doi.org/10.1128/JVI.05567-11.
-
(2011)
J. Virol.
, vol.85
, pp. 12001-12012
-
-
Paprotka, T.1
Deuschle, K.2
Metzler, V.3
Jeske, H.4
-
13
-
-
84880710456
-
How can plant DNA viruses evade siRNA-directed DNA methylation and silencing? Int
-
Pooggin MM. 2013. How can plant DNA viruses evade siRNA-directed DNA methylation and silencing? Int. J. Mol. Sci. 14:15233-15259. http: //dx.doi.org/10.3390/ijms140815233.
-
(2013)
J. Mol. Sci.
, vol.14
, pp. 15233-15259
-
-
Pooggin, M.M.1
-
14
-
-
33745916446
-
Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense
-
Deleris A, Gallego-Bartolome J, Bao J, Kasschau KD, Carrington JC, Voinnet O. 2006. Hierarchical action and inhibition of plant Dicer-like proteins in antiviral defense. Science 313:68-71. http://dx.doi.org/10 .1126/science.1128214.
-
(2006)
Science
, vol.313
, pp. 68-71
-
-
Deleris, A.1
Gallego-Bartolome, J.2
Bao, J.3
Kasschau, K.D.4
Carrington, J.C.5
Voinnet, O.6
-
15
-
-
32644436065
-
Molecular characterization of geminivirus-derived small RNAs in different plant species
-
Akbergenov R, Si-Ammour A, Blevins T, Amin I, Kutter C, Vanderschuren H, Zhang P, Gruissem W, Meins F, Jr, Hohn T, Pooggin MM. 2006. Molecular characterization of geminivirus-derived small RNAs in different plant species. Nucleic Acids Res. 34:462-471. http://dx.doi.org /10.1093/nar/gkj447.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 462-471
-
-
Akbergenov, R.1
Si-Ammour, A.2
Blevins, T.3
Amin, I.4
Kutter, C.5
Vanderschuren, H.6
Zhang, P.7
Gruissem, W.8
Meins, F.9
Hohn, T.10
Pooggin, M.M.11
-
16
-
-
79960217841
-
Massive production of small RNAs from a non-coding region of Cauliflower mosaic virus in plant defense and viral counter-defense
-
Blevins T, Rajeswaran R, Aregger M, Borah BK, Schepetilnikov M, Baerlocher L, Farinelli L, Meins F, Jr, Hohn T, Pooggin MM. 2011. Massive production of small RNAs from a non-coding region of Cauliflower mosaic virus in plant defense and viral counter-defense. Nucleic Acids Res. 39:5003-5014. http://dx.doi.org/10.1093/nar/gkr119.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 5003-5014
-
-
Blevins, T.1
Rajeswaran, R.2
Aregger, M.3
Borah, B.K.4
Schepetilnikov, M.5
Baerlocher, L.6
Farinelli, L.7
Meins, F.8
Hohn, T.9
Pooggin, M.M.10
-
17
-
-
84866953053
-
Primary and secondary siRNAs in geminivirus-induced gene silencing
-
Aregger M, Borah BK, Seguin J, Rajeswaran R, Gubaeva EG, Zvereva AS, Windels D, Vazquez F, Blevins T, Farinelli L, Pooggin MM. 2012. Primary and secondary siRNAs in geminivirus-induced gene silencing. PLoS Pathog. 8:e1002941. http://dx.doi.org/10.1371/journal.ppat.1002941.
-
(2012)
PLoS Pathog.
, vol.8
-
-
Aregger, M.1
Borah, B.K.2
Seguin, J.3
Rajeswaran, R.4
Gubaeva, E.G.5
Zvereva, A.S.6
Windels, D.7
Vazquez, F.8
Blevins, T.9
Farinelli, L.10
Pooggin, M.M.11
-
18
-
-
33845628177
-
Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing
-
Blevins T, Rajeswaran R, Shivaprasad PV, Beknazariants D, Si-Ammour A, Park HS, Vazquez F, Robertson D, Meins F, Jr, Hohn T, Pooggin MM. 2006. Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Res. 34:6233-6246. http: //dx.doi.org/10.1093/nar/gkl886.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 6233-6246
-
-
Blevins, T.1
Rajeswaran, R.2
Shivaprasad, P.V.3
Beknazariants, D.4
Si-Ammour, A.5
Park, H.S.6
Vazquez, F.7
Robertson, D.8
Meins, F.9
Hohn, T.10
Pooggin, M.M.11
-
19
-
-
69849103740
-
Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes
-
Donaire L, Wang Y, Gonzalez-Ibeas D, Mayer KF, Aranda MA, Llave C. 2009. Deep-sequencing of plant viral small RNAs reveals effective and widespread targeting of viral genomes. Virology 392:203-214. http://dx .doi.org/10.1016/j.virol.2009.07.005.
-
(2009)
Virology
, vol.392
, pp. 203-214
-
-
Donaire, L.1
Wang, Y.2
Gonzalez-Ibeas, D.3
Mayer, K.F.4
Aranda, M.A.5
Llave, C.6
-
20
-
-
78049263889
-
Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine
-
Pantaleo V, Saldarelli P, Miozzi L, Giampetruzzi A, Gisel A, Moxon S, Dalmay T, Bisztray G, Burgyan J. 2010. Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine. Virology 408:49-56. http://dx.doi.org/10.1016/j.virol.2010.09.001.
-
(2010)
Virology
, vol.408
, pp. 49-56
-
-
Pantaleo, V.1
Saldarelli, P.2
Miozzi, L.3
Giampetruzzi, A.4
Gisel, A.5
Moxon, S.6
Dalmay, T.7
Bisztray, G.8
Burgyan, J.9
-
21
-
-
79951778843
-
Characterization of small interfering RNAs derived from the geminivirus/ betasatellite complex using deep sequencing
-
Yang X, Wang Y, Guo W, Xie Y, Xie Q, Fan L, Zhou X. 2011. Characterization of small interfering RNAs derived from the geminivirus/ betasatellite complex using deep sequencing. PLoS One 6:e16928. http: //dx.doi.org/10.1371/journal.pone.0016928.
-
(2011)
PLoS One
, vol.6
-
-
Yang, X.1
Wang, Y.2
Guo, W.3
Xie, Y.4
Xie, Q.5
Fan, L.6
Zhou, X.7
-
22
-
-
84864696893
-
The banana (Musa acuminata) genome and the evolution of monocotyledonous plants
-
D'Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M, Da Silva C, Jabbari K, Cardi C, Poulain J, Souquet M, Labadie K, Jourda C, Lengelle´ J, Rodier-Goud M, Alberti A, Bernard M, Correa M, Ayyampalayam S, Mckain MR, Leebens-Mack J, Burgess D, Freeling M, Mbe´guie´-A-Mbe´guie´ D, Chabannes M, Wicker T, Panaud O, Barbosa J, Hribova E, Heslop-Harrison P, Habas R, Rivallan R, Francois P, Poiron C, Kilian A, Burthia D, Jenny C, Bakry F, Brown S, Guignon V, Kema G, Dita M, Waalwijk C, Joseph S, Dievart A, et al. 2012. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants. Nature 488: 213-217. http://dx.doi.org/10.1038/nature11241.
-
(2012)
Nature
, vol.488
, pp. 213-217
-
-
D'Hont, A.1
Denoeud, F.2
Aury, J.M.3
Baurens, F.C.4
Carreel, F.5
Garsmeur, O.6
Noel, B.7
Bocs, S.8
Droc, G.9
Rouard, M.10
Da Silva, C.11
Jabbari, K.12
Cardi, C.13
Poulain, J.14
Souquet, M.15
Labadie, K.16
Jourda, C.17
Lengelle´, J.18
Rodier-Goud, M.19
Alberti, A.20
Bernard, M.21
Correa, M.22
Ayyampalayam, S.23
Mckain, M.R.24
Leebens-Mack, J.25
Burgess, D.26
Freeling, M.27
Mbe´guie´-A-Mbe´guie´, D.28
Chabannes, M.29
Wicker, T.30
Panaud, O.31
Barbosa, J.32
Hribova, E.33
Heslop-Harrison, P.34
Habas, R.35
Rivallan, R.36
Francois, P.37
Poiron, C.38
Kilian, A.39
Burthia, D.40
Jenny, C.41
Bakry, F.42
Brown, S.43
Guignon, V.44
Kema, G.45
Dita, M.46
Waalwijk, C.47
Joseph, S.48
Dievart, A.49
more..
-
23
-
-
84864039379
-
Transgenic banana plants expressing small interfering RNAs targeted against viral replication initiation gene display high-level resistance to banana bunchy top virus infection
-
Shekhawat UK, Ganapathi TR, Hadapad AB. 2012. Transgenic banana plants expressing small interfering RNAs targeted against viral replication initiation gene display high-level resistance to banana bunchy top virus infection. J. Gen. Virol. 93:1804-1813. http://dx.doi.org/10.1099/vir.0 .041871-0.
-
(2012)
J. Gen. Virol.
, vol.93
, pp. 1804-1813
-
-
Shekhawat, U.K.1
Ganapathi, T.R.2
Hadapad, A.B.3
-
24
-
-
0001487286
-
Mosae´que du bananier. Identification et purification de diverses souches du virus
-
Yot-Dauthy D, Bove´ JM. 1966. Mosae´que du bananier. Identification et purification de diverses souches du virus. Fruit 21:449-465.
-
(1966)
Fruit
, vol.21
, pp. 449-465
-
-
Yot-Dauthy, D.1
Bove´, J.M.2
-
25
-
-
0000412562
-
Purification and serology of a bacilliform virus associated with banana streak disease
-
Lockhart BEL. 1986. Purification and serology of a bacilliform virus associated with banana streak disease. Phytopathology 76:995-999. http: //dx.doi.org/10.1094/Phyto-76-995.
-
(1986)
Phytopathology
, vol.76
, pp. 995-999
-
-
Lockhart, B.E.L.1
-
26
-
-
0034857026
-
Vector transmission of Banana streak virus in the screenhouse in Uganda
-
Kubiriba J, Legg JP, Tushemereirwe W, Adipala E. 2001. Vector transmission of Banana streak virus in the screenhouse in Uganda. Ann. Appl. Biol. 139:37-43. http://dx.doi.org/10.1111/j.1744-7348.2001.tb00128.x.
-
(2001)
Ann. Appl. Biol.
, vol.139
, pp. 37-43
-
-
Kubiriba, J.1
Legg, J.P.2
Tushemereirwe, W.3
Adipala, E.4
-
27
-
-
13644261734
-
Characterisation of Banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated Musa
-
Geering AD, Pooggin MM, Olszewski NE, Lockhart BE, Thomas JE. 2005. Characterisation of Banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated Musa. Arch. Virol. 150: 787-796. http://dx.doi.org/10.1007/s00705-004-0471-z.
-
(2005)
Arch. Virol.
, vol.150
, pp. 787-796
-
-
Geering, A.D.1
Pooggin, M.M.2
Olszewski, N.E.3
Lockhart, B.E.4
Thomas, J.E.5
-
28
-
-
84906990062
-
Banana streak virus, Web descriptions of plant viruses, description no. 390
-
Geering ADW, Thomas JE. 2002. Banana streak virus. Web descriptions of plant viruses, description no. 390. Assoc. Appl. Biol. http://www .dpvweb.net/dpv/showdpv.php?dpvno=390.
-
(2002)
Assoc. Appl. Biol
-
-
Geering, A.D.W.1
Thomas, J.E.2
-
29
-
-
0032408259
-
Cloning and sequence analysis of banana streak virus DNA
-
Harper G, Hull R. 1998. Cloning and sequence analysis of banana streak virus DNA. Virus Genes 17:271-278. http://dx.doi.org/10.1023 /A:1008021921849.
-
(1998)
Virus Genes
, vol.17
, pp. 271-278
-
-
Harper, G.1
Hull, R.2
-
30
-
-
84880714992
-
Caulimoviridae (plant pararetroviruses)
-
eLS, John Wiley & Sons Ltd., Chichester, United Kingdom.
-
Hull R. 2007. Caulimoviridae (plant pararetroviruses). eLS, John Wiley & Sons Ltd., Chichester, United Kingdom. http://www.els.net. http://dx.doi .org/10.1002/9780470015902.a0000746.pub2.
-
(2007)
-
-
Hull, R.1
-
31
-
-
84890115375
-
Plant pararetroviruses: replication and expression
-
Hohn T, Rothnie H. 2013. Plant pararetroviruses: replication and expression. Curr. Opin. Virol. 3:621-628. http://dx.doi.org/10.1016/j.coviro .2013.08.013.
-
(2013)
Curr. Opin. Virol.
, vol.3
, pp. 621-628
-
-
Hohn, T.1
Rothnie, H.2
-
32
-
-
84890117032
-
Plant pararetroviruses: interactions of cauliflower mosaic virus with plants and insects
-
Hohn T. 2013. Plant pararetroviruses: interactions of cauliflower mosaic virus with plants and insects. Curr. Opin. Virol. 3:629-638. http://dx.doi .org/10.1016/j.coviro.2013.08.014.
-
(2013)
Curr. Opin. Virol.
, vol.3
, pp. 629-638
-
-
Hohn, T.1
-
33
-
-
0027318243
-
Nonlinear ribosome migration on cauliflower mosaic virus 35S RNA
-
Fe´tterer J, Kiss-Le´szle´ Z, Hohn T. 1993. Nonlinear ribosome migration on cauliflower mosaic virus 35S RNA. Cell 73:789-802. http://dx.doi.org /10.1016/0092-8674(93)90257-Q.
-
(1993)
Cell
, vol.73
, pp. 789-802
-
-
Fe´tterer, J.1
Kiss-Le´szle´, Z.2
Hohn, T.3
-
34
-
-
33646186517
-
Mechanism of ribosome shunting in Rice tungro bacilliform pararetrovirus
-
Pooggin MM, Ryabova LA, He X, Fe´tterer J, Hohn T. 2006. Mechanism of ribosome shunting in Rice tungro bacilliform pararetrovirus. RNA 12: 841-850. http://dx.doi.org/10.1261/rna.2285806.
-
(2006)
RNA
, vol.12
, pp. 841-850
-
-
Pooggin, M.M.1
Ryabova, L.A.2
He, X.3
Fe´tterer, J.4
Hohn, T.5
-
35
-
-
45749127798
-
Cross-species functionality of pararetroviral elements driving ribosome shunting
-
Pooggin MM, Fe´tterer J, Hohn T. 2008. Cross-species functionality of pararetroviral elements driving ribosome shunting. PLoS One 3:e1650. http://dx.doi.org/10.1371/journal.pone.0001650.
-
(2008)
PLoS One
, vol.3
-
-
Pooggin, M.M.1
Fe´tterer, J.2
Hohn, T.3
-
36
-
-
0344980122
-
A short open reading frame terminating in front of a stable hairpin is the conserved feature in pregenomic RNA leaders of plant pararetroviruses
-
Pooggin MM, Fe´tterer J, Skryabin KG, Hohn T. 1999. A short open reading frame terminating in front of a stable hairpin is the conserved feature in pregenomic RNA leaders of plant pararetroviruses. J. Gen. Virol. 80:2217-2228.
-
(1999)
J. Gen. Virol.
, vol.80
, pp. 2217-2228
-
-
Pooggin, M.M.1
Fe´tterer, J.2
Skryabin, K.G.3
Hohn, T.4
-
37
-
-
0036048711
-
Viral strategies of translation initiation: ribosomal shunt and reinitiation
-
Ryabova LA, Pooggin MM, Hohn T. 2002. Viral strategies of translation initiation: ribosomal shunt and reinitiation. Prog. Nucleic Acid Res. Mol. Biol. 72:1-39. http://dx.doi.org/10.1016/S0079-6603(02)72066-7.
-
(2002)
Prog. Nucleic Acid Res. Mol. Biol.
, vol.72
, pp. 1-39
-
-
Ryabova, L.A.1
Pooggin, M.M.2
Hohn, T.3
-
38
-
-
0345090831
-
Rice tungro bacilliform virus open reading frames II and III are translated from polycistronic pregenomic RNA by leaky scanning
-
Fe´tterer J, Rothnie HM, Hohn T, Potrykus I. 1997. Rice tungro bacilliform virus open reading frames II and III are translated from polycistronic pregenomic RNA by leaky scanning. J. Virol. 71:7984-7989.
-
(1997)
J. Virol.
, vol.71
, pp. 7984-7989
-
-
Fe´tterer, J.1
Rothnie, H.M.2
Hohn, T.3
Potrykus, I.4
-
39
-
-
0033962105
-
Interaction of the cauliflower mosaic virus coat protein with the presiRNAs genomic RNA leader
-
Guerra-Peraza O, de Tapia M, Hohn T, Hemmings-Mieszczak M. 2000. Interaction of the cauliflower mosaic virus coat protein with the presiRNAs genomic RNA leader. J. Virol. 74:2067-2072. http://dx.doi.org/10.1128 /JVI.74.5.2067-2072.2000.
-
(2000)
J. Virol.
, vol.74
, pp. 2067-2072
-
-
Guerra-Peraza, O.1
de Tapia, M.2
Hohn, T.3
Hemmings-Mieszczak, M.4
-
40
-
-
13644251111
-
Banana contains a diverse array of endogenous badnaviruses
-
Geering AD, Olszewski NE, Harper G, Lockhart BE, Hull R, Thomas JE. 2005. Banana contains a diverse array of endogenous badnaviruses. J. Gen. Virol. 86:511-520. http://dx.doi.org/10.1099/vir.0.80261-0.
-
(2005)
J. Gen. Virol.
, vol.86
, pp. 511-520
-
-
Geering, A.D.1
Olszewski, N.E.2
Harper, G.3
Lockhart, B.E.4
Hull, R.5
Thomas, J.E.6
-
41
-
-
84890118678
-
Endogenous pararetroviruses-a reservoir of virus infection in plants
-
Chabannes M, Iskra-Caruana ML. 2013. Endogenous pararetroviruses-a reservoir of virus infection in plants. Curr. Opin. Virol. 3:615-620. http: //dx.doi.org/10.1016/j.coviro.2013.08.012.
-
(2013)
Curr. Opin. Virol.
, vol.3
, pp. 615-620
-
-
Chabannes, M.1
Iskra-Caruana, M.L.2
-
42
-
-
0034829454
-
Analysis of the distribution and structure of integrated Banana streak virus DNA in a range of Musa cultivars
-
Geering AD, Olszewski NE, Dahal G, Thomas JE, Lockhart BE. 2001. Analysis of the distribution and structure of integrated Banana streak virus DNA in a range of Musa cultivars. Mol. Plant Pathol. 2:207-213. http://dx .doi.org/10.1046/j.1464-6722.2001.00071.x.
-
(2001)
Mol. Plant Pathol.
, vol.2
, pp. 207-213
-
-
Geering, A.D.1
Olszewski, N.E.2
Dahal, G.3
Thomas, J.E.4
Lockhart, B.E.5
-
43
-
-
67650321326
-
Phylogeny of Banana Streak Virus reveals recent and repetitive endogenization in the genome of its banana host (Musa sp.)
-
Gayral P, Iskra-Caruana ML. 2009. Phylogeny of Banana Streak Virus reveals recent and repetitive endogenization in the genome of its banana host (Musa sp.). J. Mol. Evol. 69:65-80. http://dx.doi.org/10.1007/s00239 -009-9253-2.
-
(2009)
J. Mol. Evol.
, vol.69
, pp. 65-80
-
-
Gayral, P.1
Iskra-Caruana, M.L.2
-
44
-
-
84880582166
-
Three infectious viral species lying in wait in the banana genome
-
Chabannes M, Baurens FC, Duroy PO, Bocs S, Vernerey MS, Rodier-Goud M, Barbe V, Gayral P, Iskra-Caruana ML. 2013. Three infectious viral species lying in wait in the banana genome. J. Virol. 87:8624-8637. http://dx.doi.org/10.1128/JVI.00899-13.
-
(2013)
J. Virol.
, vol.87
, pp. 8624-8637
-
-
Chabannes, M.1
Baurens, F.C.2
Duroy, P.O.3
Bocs, S.4
Vernerey, M.S.5
Rodier-Goud, M.6
Barbe, V.7
Gayral, P.8
Iskra-Caruana, M.L.9
-
45
-
-
45749096662
-
A single Banana streak virus integration event in the banana genome as the origin of infectious endogenous pararetrovirus
-
Gayral P, Noa-Carrazana JC, Lescot M, Lheureux F, Lockhart BE, Matsumoto T, Piffanelli P, Iskra-Caruana ML. 2008. A single Banana streak virus integration event in the banana genome as the origin of infectious endogenous pararetrovirus. J. Virol. 82:6697-6710. http://dx.doi .org/10.1128/JVI.00212-08.
-
(2008)
J. Virol.
, vol.82
, pp. 6697-6710
-
-
Gayral, P.1
Noa-Carrazana, J.C.2
Lescot, M.3
Lheureux, F.4
Lockhart, B.E.5
Matsumoto, T.6
Piffanelli, P.7
Iskra-Caruana, M.L.8
-
46
-
-
79953192989
-
Complete genome sequence of a novel badnavirus, banana streak IM virus
-
Geering AD, Parry JN, Thomas JE. 2011. Complete genome sequence of a novel badnavirus, banana streak IM virus. Arch. Virol. 156:733-737. http://dx.doi.org/10.1007/s00705-011-0946-7.
-
(2011)
Arch. Virol.
, vol.156
, pp. 733-737
-
-
Geering, A.D.1
Parry, J.N.2
Thomas, J.E.3
-
47
-
-
34347375321
-
Molecular characterization of banana streak acuminata Vietnam virus isolated from Musa acuminata siamea (banana cultivar)
-
Lheureux F, Laboureau N, Muller E, Lockhart BE, Iskra-Caruana ML. 2007. Molecular characterization of banana streak acuminata Vietnam virus isolated from Musa acuminata siamea (banana cultivar). Arch. Virol. 152:1409-1416. http://dx.doi.org/10.1007/s00705-007-0946-9.
-
(2007)
Arch. Virol.
, vol.152
, pp. 1409-1416
-
-
Lheureux, F.1
Laboureau, N.2
Muller, E.3
Lockhart, B.E.4
Iskra-Caruana, M.L.5
-
48
-
-
79954767132
-
Molecular characterisation of six badnavirus species associated with leaf streak disease of banana in East Africa
-
James AP, Geijskes RJ, Dale JL, Harding RM. 2011. Molecular characterisation of six badnavirus species associated with leaf streak disease of banana in East Africa. Ann. Appl. Biol. 158:346-353. http://dx.doi.org/10 .1111/j.1744-7348.2011.00466.x.
-
(2011)
Ann. Appl. Biol.
, vol.158
, pp. 346-353
-
-
James, A.P.1
Geijskes, R.J.2
Dale, J.L.3
Harding, R.M.4
-
49
-
-
33747149223
-
Improved detection of episomal Banana streak viruses by multiplex immunocapture PCR
-
Le Provost G, Iskra-Caruana ML, Acina I, Teycheney PY. 2006. Improved detection of episomal Banana streak viruses by multiplex immunocapture PCR. J. Virol. Methods 137:7-13. http://dx.doi.org/10.1016/j .jviromet.2006.05.021.
-
(2006)
J. Virol. Methods
, vol.137
, pp. 7-13
-
-
Le Provost, G.1
Iskra-Caruana, M.L.2
Acina, I.3
Teycheney, P.Y.4
-
50
-
-
3142546536
-
A method for isolation of total RNA from fruit tissues of banana
-
Liu JJ, Goh CJ, Loh CS, Liu P, Pua EC. 1998. A method for isolation of total RNA from fruit tissues of banana. Plant Mol. Biol. Rep. 16:1-6. http: //dx.doi.org/10.1023/A:1017158311412.
-
(1998)
Plant Mol. Biol. Rep.
, vol.16
, pp. 1-6
-
-
Liu, J.J.1
Goh, C.J.2
Loh, C.S.3
Liu, P.4
Pua, E.C.5
-
51
-
-
0001624029
-
Chloroplast DNA restriction fragment length polymorphisms (RFLPs) in Musa species
-
Gawel NJ, Jarret RL. 1991. Chloroplast DNA restriction fragment length polymorphisms (RFLPs) in Musa species. Theor. Appl. Genet. 81:783-786.
-
(1991)
Theor. Appl. Genet.
, vol.81
, pp. 783-786
-
-
Gawel, N.J.1
Jarret, R.L.2
-
52
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino DR, Birney E. 2008. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18:821-829. http://dx.doi .org/10.1101/gr.074492.107.
-
(2008)
Genome Res.
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
53
-
-
84859768479
-
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
-
Schulz MH, Zerbino DR, Vingron M, Birney E. 2012. Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinformatics 28:1086-1092. http://dx.doi.org/10.1093/bioinformatics /bts094.
-
(2012)
Bioinformatics
, vol.28
, pp. 1086-1092
-
-
Schulz, M.H.1
Zerbino, D.R.2
Vingron, M.3
Birney, E.4
-
54
-
-
84875634162
-
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
-
Thorvaldsde´ttir H, Robinson JT, Mesirov JP. 2013. Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. Bioinform. 14:178-192. http://dx.doi.org/10.1093/bib /bbs017.
-
(2013)
Brief. Bioinform.
, vol.14
, pp. 178-192
-
-
Thorvaldsde´ttir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
55
-
-
77949587649
-
Fast and accurate long-read alignment with Burrows-Wheeler transform
-
Li H, Durbin R. 2010. Fast and accurate long-read alignment with Burrows-Wheeler transform. Bioinformatics 26:589-595. http://dx.doi.org /10.1093/bioinformatics/btp698.
-
(2010)
Bioinformatics
, vol.26
, pp. 589-595
-
-
Li, H.1
Durbin, R.2
-
56
-
-
84887251568
-
MISIS: a bioinformatics tool to view and analyze maps of small RNAs derived from viruses and genomic loci generating multiple small RNAs
-
Seguin J, Otten P, Baerlocher L, Farinelli L, Pooggin MM. 2014. MISIS: a bioinformatics tool to view and analyze maps of small RNAs derived from viruses and genomic loci generating multiple small RNAs. J. Virol. Methods 195:120-122. http://dx.doi.org/10.1016/j.jviromet.2013.10.013.
-
(2014)
J. Virol. Methods
, vol.195
, pp. 120-122
-
-
Seguin, J.1
Otten, P.2
Baerlocher, L.3
Farinelli, L.4
Pooggin, M.M.5
-
58
-
-
84895746307
-
De novo reconstruction of consensus master genomes of plant RNA and DNA viruses from siRNAs
-
Seguin J, Rajeswaran R, Malpica-Le´pez N, Martin RR, Kasschau K, Dolja VV, Otten P, Farinelli L, Pooggin MM. 2014. De novo reconstruction of consensus master genomes of plant RNA and DNA viruses from siRNAs. PLoS One 9:e88513. http://dx.doi.org/10.1371/journal.pone .0088513.
-
(2014)
PLoS One
, vol.9
-
-
Seguin, J.1
Rajeswaran, R.2
Malpica-Le´pez, N.3
Martin, R.R.4
Kasschau, K.5
Dolja, V.V.6
Otten, P.7
Farinelli, L.8
Pooggin, M.M.9
-
59
-
-
84863012576
-
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage
-
Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ. 2011. Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage. Plant Cell 23:4185-4207. http://dx.doi.org/10.1105/tpc.111.089045.
-
(2011)
Plant Cell
, vol.23
, pp. 4185-4207
-
-
Jeong, D.H.1
Park, S.2
Zhai, J.3
Gurazada, S.G.4
De Paoli, E.5
Meyers, B.C.6
Green, P.J.7
-
60
-
-
80054710686
-
Identification of novel maize miRNAs by measuring the precision of precursor processing
-
Jiao Y, Song W, Zhang M, Lai J. 2011. Identification of novel maize miRNAs by measuring the precision of precursor processing. BMC Plant Biol. 11:141. http://dx.doi.org/10.1186/1471-2229-11-141.
-
(2011)
BMC Plant Biol.
, vol.11
, pp. 141
-
-
Jiao, Y.1
Song, W.2
Zhang, M.3
Lai, J.4
-
61
-
-
75449114906
-
Genome-wide profiling of populus small RNAs
-
Klevebring D, Street NR, Fahlgren N, Kasschau KD, Carrington JC, Lundeberg J, Jansson S. 2009. Genome-wide profiling of populus small RNAs. BMC Genomics 10:620. http://dx.doi.org/10.1186/1471-2164-10 -620.
-
(2009)
BMC Genomics
, vol.10
, pp. 620
-
-
Klevebring, D.1
Street, N.R.2
Fahlgren, N.3
Kasschau, K.D.4
Carrington, J.C.5
Lundeberg, J.6
Jansson, S.7
-
62
-
-
33947236065
-
Genome-wide profiling and analysis of Arabidopsis siRNAs
-
Kasschau KD, Fahlgren N, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Carrington JC. 2007. Genome-wide profiling and analysis of Arabidopsis siRNAs. PLoS Biol. 5:e57. http://dx.doi.org/10.1371/journal .pbio.0050057.
-
(2007)
PLoS Biol.
, vol.5
-
-
Kasschau, K.D.1
Fahlgren, N.2
Chapman, E.J.3
Sullivan, C.M.4
Cumbie, J.S.5
Givan, S.A.6
Carrington, J.C.7
-
63
-
-
41349114789
-
Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5= terminal nucleotide
-
Mi S, Cai T, Hu Y, Chen Y, Hodges E, Ni F, Wu L, Li S, Zhou H, Long C, Chen S, Hannon GJ, Qi Y. 2008. Sorting of small RNAs into Arabidopsis argonaute complexes is directed by the 5= terminal nucleotide. Cell 133:116-127. http://dx.doi.org/10.1016/j.cell.2008.02.034.
-
(2008)
Cell
, vol.133
, pp. 116-127
-
-
Mi, S.1
Cai, T.2
Hu, Y.3
Chen, Y.4
Hodges, E.5
Ni, F.6
Wu, L.7
Li, S.8
Zhou, H.9
Long, C.10
Chen, S.11
Hannon, G.J.12
Qi, Y.13
-
64
-
-
41149158475
-
Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation
-
Montgomery TA, Howell MD, Cuperus JT, Li D, Hansen JE, Alexander AL, Chapman EJ, Fahlgren N, Allen E, Carrington JC. 2008. Specificity of ARGONAUTE7-miR390 interaction and dual functionality in TAS3 trans-acting siRNA formation. Cell 133:128-141. http://dx.doi.org/10 .1016/j.cell.2008.02.033.
-
(2008)
Cell
, vol.133
, pp. 128-141
-
-
Montgomery, T.A.1
Howell, M.D.2
Cuperus, J.T.3
Li, D.4
Hansen, J.E.5
Alexander, A.L.6
Chapman, E.J.7
Fahlgren, N.8
Allen, E.9
Carrington, J.C.10
-
65
-
-
77950342461
-
The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci
-
Havecker ER, Wallbridge LM, Hardcastle TJ, Bush MS, Kelly KA, Dunn RM, Schwach F, Doonan JH, Baulcombe DC. 2010. The Arabidopsis RNA-directed DNA methylation argonautes functionally diverge based on their expression and interaction with target loci. Plant Cell 22:321-334. http://dx.doi.org/10.1105/tpc.109.072199.
-
(2010)
Plant Cell
, vol.22
, pp. 321-334
-
-
Havecker, E.R.1
Wallbridge, L.M.2
Hardcastle, T.J.3
Bush, M.S.4
Kelly, K.A.5
Dunn, R.M.6
Schwach, F.7
Doonan, J.H.8
Baulcombe, D.C.9
-
66
-
-
0033516513
-
The McrBC endonuclease translocates DNA in a reaction dependent on GTP hydrolysis
-
Panne D, Raleigh EA, Bickle TA. 1999. The McrBC endonuclease translocates DNA in a reaction dependent on GTP hydrolysis. J. Mol. Biol. 290:49-60. http://dx.doi.org/10.1006/jmbi.1999.2894.
-
(1999)
J. Mol. Biol.
, vol.290
, pp. 49-60
-
-
Panne, D.1
Raleigh, E.A.2
Bickle, T.A.3
|