Characterisation of Banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated Musa

Archives of Virology

Volumn 150, Issue 4, 2005, Pages 787-796

  Geering, A D W ^a   Pooggin, M M ^b   Olszewski, N E ^c   Lockhart, B E L ^c   Thomas, J E ^a  

^a DEPARTMENT OF AGRICULTURE AND FISHERIES   (Australia)

^b UNIVERSITY OF BASEL   (Switzerland)

^c UNIVERSITY OF MINNESOTA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PRIMER DNA; VIRUS DNA;

ARTICLE; BADNAVIRUS; BANANA; CHEMICAL STRUCTURE; CLASSIFICATION; CONFORMATION; GENETICS; GENOME; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PHYLOGENY; POLYMERASE CHAIN REACTION; VIROLOGY; VIRUS DNA CELL DNA INTERACTION;

BADNAVIRUS; BASE SEQUENCE; DNA PRIMERS; DNA, VIRAL; GENOME, PLANT; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MUSA; NUCLEIC ACID CONFORMATION; OPEN READING FRAMES; PHYLOGENY; POLYMERASE CHAIN REACTION; VIRUS INTEGRATION;

BANANA STREAK VIRUS; MUSA; PLANOCOCCUS CITRI;

EID: 13644261734     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-004-0471-z     Document Type: Article

References (30)

1. Dallot S, Acuña P, Rivera C, Ramírez P, Côte F, Lockhart BEL, Caruana ML (2001) Evidence that the proliferation stage of micropropagation procedure is determinant in the expression of Banana streak virus integrated into the genome of the FHIA 21 hybrid (Musa AAAB). Arch Virol 146: 2179-2190
2. Daniells JW, Geering ADW, Bryde NJ, Thomas JE (2001) The effect of Banana streak virus on the growth and yield of dessert bananas in tropical Australia. Ann Appl Biol 139: 51-60
3. Fütterer J, Potrykus I, Bao Y, Li L, Burns TM, Hull R, Hohn T (1996) Position-dependent ATT initiation during plant pararetrovirus rice tungro bacilliform virus translation. J Virol 70: 2999-3010
4. Fütterer J, Rothnie HM, Hohn T, Potrykus I (1997) Rice tungro bacilliform virus open reading frames II and III are translated from polycistronic pregenomic RNA by leaky scanning. J Virol 71: 7984-7989
5. Geering ADW, McMichael LA, Dietzgen RG, Thomas JE (2000) Genetic diversity among Banana streak virus isolates from Australia. Phytopathology 90: 921-927
6. Geering ADW, Olszewski NE, Dahal G, Thomas JE, Lockhart BEL (2001) Analysis of the distribution and structure of integrated Banana streak virus DNA in a range of Musa cultivars. Mol Plant Pathol 2: 207-213
7. Geering ADW, Thomas JE (2002) Banana streak virus. Assoc Appl Biol Web Descriptions of Plant Viruses, Description no. 390, http://www3.res.bbsrc.ac.uk/ webdpv/
8. Harper G, Hull R (1998) Cloning and sequence analysis of banana streak virus DNA. Virus Genes 17: 271-278
9. Harper G, Dahal G, Thottappilly G, Hull R (1999) Detection of episomal banana streak badnavirus by IC-PCR. J Virol Methods 79: 1-8
10. Harper G, Osuji JO, Heslop-Harrison JSP, Hull R (1999) Integration of banana streak badnavirus into the Musa genome: molecular and cytogenetic evidence. Virology 255: 207-213
11. Herzog E, Guerra-Peraza O, Hohn T (2000) The rice tungro bacilliform virus gene II product interacts with the coat protein domain of the viral gene III polyprotein. J Virol 74: 2073-2083
12. Hull R (2002) Matthews' plant virology, 4th edn. Academic Press, San Diego
13. Jacquot E, Hagen LS, Jacquemond M, Yot P (1996) The open reading frame 2 product of cacao swollen shoot badnavirus is a nucleic acid-binding protein. Virology 225: 191-195
14. Jacquot E, Keller M, Yot P (1997) A short basic domain supports a nucleic acid-binding activity in the rice tungro bacilliform virus open reading frame 2 product. Virology 239: 352-359
15. Jones AT, McGavin WJ, Geering ADW, Lockhart BEL (2002) Identification of Rubus yellow net virus as a distinct badnavirus and its detection by PCR in Rubus species and in aphids. Ann Appl Biol 141: 1-10
16. Kozak M (1991) Structural features in eukaryotic mRNAs that modulate the initiation of translation. J Biol Chem 266: 19867-19870
17. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17: 1244-1245
18. Lheureux F, Carreel F, Jenny C, Lockhart BEL, Iskra-Caruana ML (2003) Identification of genetic markers linked to banana streak disease expression in inter-specific Musa hybrids. Theor Appl Genet 106: 594-598
19. Lockhart BEL, Olszewski NE (1993) Serological and genomic heterogeneity of banana streak badnavirus: implications for virus detection in Musa germplasm. In: Ganry J (ed) Breeding banana and plantain for resistance to diseases and pests. CIRAD, in collaboration with INIBAP (International Network for the Improvement of Banana and Plantain), Montpellier, pp 105-113
20. Lockhart BEL, Jones DR (1999) Banana streak. In: Jones DR (ed) Diseases of banana, abaca and enset. CABI Publishing, Wallingford, UK, pp 263-274
21. Medberry SL, Lockhart BEL, Olszewski NE (1990) Properties of Commelina yellow mottle virus's complete DNA sequence, genomic discontinuities and transcript suggest that it is a pararetrovirus. Nucleic Acids Res 18: 5505-5513
22. Ndowora T, Dahal G, LaFleur D, Harper G, Hull R, Olszewski N, Lockhart B (1999) Evidence that badnavirus infection in Musa can originate from integrated sequences. Virology 255: 214-220
23. Pooggin MM, Fütterer J, Skyrabin KG, Hohn T (1999) A short open reading frame terminating in front of a stable hairpin is the conserved feature in pregenomic RNA leaders of plant pararetroviruses. J Gen Virol 80: 2217-2228
24. Ryabova LA, Hohn T (2000) Ribosome shunting in the cauliflower mosaic virus 35S RNA leader is a special case of reinitiation of translation functioning in plant and animal systems. Genes Devel 14: 817-829
25. Schenk PM, Remans T, Sagi L, Elliot AR, Dietzgen RG, Swennen R, Ebert PR, Grof CPL, Manners JM (2001) Promoters for pregenomic RNA of banana streak virus are active for transgene expression in monocot and dicot plants. Plant Mol Biol 47: 399-412
26. Silva DPPd, Jones P, Shaw MW (2002) Identification and transmission of Piper yellow mottle virus and Cucumber mosaic virus infecting black pepper (Piper nigrum) in Sri Lanka. Plant Pathol 51: 537-545
27. Stavolone L, Herzog E, Leclerc D, Hohn T (2001) Tetramerization is a conserved feature of the virion-associated protein in plant pararetroviruses. J Virol 75: 7739-7743
28. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 24: 4876-4882
29. Tzafrir I, Ayala-Navarrette L, Lockhart BEL, Olszewski NE (1997) The N-terminal portion of the 216-kDa polyprotein of Commelina yellow mottle badnavirus is required for virus movement but not for replication. Virology 232: 359-368
30. Wardlaw CW (1961) Banana diseases. Longmans, Green and Co., Edinburgh