Banana contains a diverse array of endogenous badnaviruses

Journal of General Virology

Volumn 86, Issue 2, 2005, Pages 511-520

  Geering, Andrew D W ^a   Olszewski, Neil E ^b   Harper, Glyn ^c   Lockhart, Benham E L ^b   Hull, Roger ^c   Thomas, John E ^a  

^a DEPARTMENT OF AGRICULTURE AND FISHERIES   (Australia)

^b UNIVERSITY OF MINNESOTA   (United States)

^c JOHN INNES CENTRE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; VIRUS DNA;

ARTICLE; BADNAVIRUS; BANANA; CONTROLLED STUDY; CULTIVAR; DNA SEQUENCE; ENDOGENOUS VIRUS; GENE AMPLIFICATION; MOLECULAR CLONING; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PLANT VIRUS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SPECIES DIFFERENCE; VIRUS DNA CELL DNA INTERACTION; VIRUS GENOME;

BADNAVIRUS; GENOME, PLANT; GENOME, VIRAL; GENOTYPE; MOLECULAR SEQUENCE DATA; MUSA; OPEN READING FRAMES; PHYLOGENY; VARIATION (GENETICS); VIRUS INTEGRATION;

BADNAVIRUS; MUSA ACUMINATA; MUSA BALBISIANA; MUSA SCHIZOCARPA;

EID: 13644251111     PISSN: 00221317     EISSN: None     Source Type: Journal    
DOI: 10.1099/vir.0.80261-0     Document Type: Article

References (33)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
2. Bakry, F., Carreel, F., Caruana, M.-L., Côte, F.-X., Jenny, C. & Tézenas du Montcel, H. (2001). Banana. In Tropical Plant Breeding, pp. 1-29. Edited by A. Charrier, M. Jacquot, S. Hamon & D. Nicolas. Enfield, NH, USA: Science Publishers.
3. Bensasson, D., Zhang, D.-X., Hartl, D. L. & Hewitt, G. M. (2001). Mitochondrial pseudogenes: evolution's misplaced witnesses. Trends Ecol Evol 16, 314-321.
4. Carreel, F., Gonzalez de Leon, D., Lagoda, P., Lanaud, C., Jenny, C., Horry, J. P. & Tezenas du Montcel, H. (2002). Ascertaining maternal and paternal lineage within Musa by chloroplast and mitochondrial DNA RFLP analyses. Genome 45, 679-692.
5. Dahal, G., Dahal, F., Pasberg-Gauhl, C., Hughes, J. d. A., Thottapilly, G. & Lockhart, B. E. L. (1999). Evaluation of micro-propagated plantain and banana (Musa spp.) for banana streak badnavirus incidence under field and screenhouse conditions in Nigeria. Ann Appl Biol 134, 181-191.
6. Dallot, S., Acuna, P., Rivera, C., Ramirez, P., Cote, F., Lockhart B. E. L. & Caruana, M. L. (2001). Evidence that the proliferation stage of micropropagation procedure is determinant in the expression of Banana streak virus integrated into the genome of the FHIA 21 hybrid (Musa AAAB). Arch Virol 146, 2179-2190.
7. Daniells, J., Jenny, C., Karamura, D. & Tomekpe, K. (2001). Musalogue: a catalogue of Musa germplasm. Diversity in the genus Musa. Compiled by E. Arnaud & S. Sharrock. International Network for the Improvement of Banana and Plantain.
8. Gawel, N. J. & Jarret, R. L. (1991). A modified CTAB DNA extraction procedure for Musa and Ipomoea. Plant Mol Biol Rep 9, 262-266.
9. Geering, A. D. W., McMichael, L. A., Dietzgen, R. G. & Thomas, J. E. (2000). Genetic diversity among Banana streak virus isolates from Australia. Phytopathology 90, 921-927.
10. Gearing, A. D. W., Olszewski, N. E., Dahal, G., Thomas, J. E. & Lockhart, B. E. L. (2001). Analysis of the distribution and structure of integrated Banana streak virus DNA in a range of Musa cultivars. Mol Plant Pathol 2, 207-213.
11. Gearing, A. D. W., Pooggin, M. M., Olszewski, N. E., Lockhart, B. E. L. & Thomas, J. E. (2005). Characterisation of Banana streak Mysore virus and evidence that its DNA is integrated in the B genome of cultivated Musa. Arch Virol (in press).
12. Gregor, W., Mette, M. F., Staginnus, C., Matzke, M. A. & Matzke, A. J. M. (2004). A distinct endogenous pararetrovirus family in Nicotiana tomentosiformis, a diploid progenitor of polyploid tobacco. Plant Physiol 134, 1191-1199.
13. Harper, G., Dahal, G., Thottappilly, G. & Hull, R. (1999a). Detection of episomal banana streak badnavirus by IC-PCR. J Virol Methods 79, 1-8.
14. Harper, G., Osuji, J. O., Heslop-Harrison, J. S. P. & Hull, R. (1999b). Integration of banana streak badnavirus into the Musa genome: molecular and cytogenetic evidence. Virology 255 207-213.
15. Hughes, J. F. & Coffin, J. M. (2001). Evidence for genomic rearrangements mediated by human endogenous retroviruses during primate evolution. Nat Genet 29, 487-489.
16. Hull, R. (2002). Matthews' Plant Virology, 4th edn. San Diego: Academic Press.
17. Hull, R., Harper, G. & Lockhart, B. (2000). Viral sequences integrated into plant genomes. Trends Plant Sci 5, 362-365.
18. Jakowitsch, J., Mette, M. F., van der Winden, J. & Matzke, M. A. (1999). Integrated pararetroviral sequences define a unique class of dispersed repetitive DNA in plants. Proc Natl Acad Sci U S A 96, 13241-13246.
19. Jenny, C., Carreel, F. & Bakry, F. (1997). Revision on banana taxonomy: 'Klue Tiparot' (Musa sp) reclassified as a triploid. Fruits 52, 83-91.
20. Jones, D. R. (1999). Introduction to banana, abacá and enset. In Diseases of Banana, Abacá and Enset, pp. 1-36. Edited by D. R. Jones. Wallingford, UK: CABI Publishing.
21. Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. (2001). MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
22. Kunii, M. M., Kanda, M. M., Nagano, H. H., Uyeda, I. I., Kishima, Y. Y. & Sano, Y. Y. (2004). Reconstruction of putative DNA virus from endogenous rice tungro bacilliform virus-like sequences in the rice genome: implications for evolution and integration. BMC Genomics 5, 80.
23. Lheureux, F., Carreel, F., Jenny, C., Lockhart, B. E. L. & Iskra-Caruana, M. L. (2003). identification of genetic markers linked to banana streak disease expression in inter-specific Musa hybrids. Theor Appl Genet 106, 594-598.
24. Lockhart, B. E., Menke, J., Dahal, G. & Olszewski, N. E. (2000). Characterization and genomic analysis of tobacco vein clearing virus, a plant pararetrovirus that is transmitted vertically and related to sequences integrated in the host genome. J Gen Virol 81, 1579-1585.
25. Matzke, M., Gregor, W., Mette, M. F., Aufsatz, W., Kanno, T., Jakowitsch, J. & Matzke, A. J. M. (2004). Endogenous para-retroviruses of allotetraploid Nicotiana tabacum and its diploid progenitors, N. sylvestris and N. tomentosiformis. Biol J Linn Soc 82, 627-638.
26. Mette, M. F., Kanno, T., Aufsatz, W., Jakowitsch, J., van der Winden, J., Matzke, M. A. & Matzke, A. J. M. (2002). Endogenous viral sequences and their potential contribution to heritable virus resistance in plants. EMBO J 21, 461-469.
27. Murad, L., Bielawski, J. P., Matyasek, R., Kovarík, A., Nichols, R. A., Leitch, A. R. & Lichtenstein, C. P. (2004). The origin and evolution of geminivirus-related DNA sequences in Nicotiana. Heredity 92, 352-358.
28. Ndowora, T., Dahal, G., LaFleur, D., Harper, G., Hull, R., Olszewski, N. E. & Lockhart, B. (1999). Evidence that badnavirus infection in Musa can originate from integrated sequences. Virology 255, 214-220.
29. Nei, M. & Gojobori, T. (1986). Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3, 418-426.
30. Page, R. D. M. & Holmes, E. C. (1998). Molecular Evolution: a phylogenetic approach. Oxford: Blackwell Science.
31. Richert-Pöggeler, K. R., Noreen, F., Schwarzacher, T., Harper, G. & Hohn, T. (2003). Induction of infectious petunia vein clearing (pararetro) virus from endogenous provirus in petunia. EMBO J 22, 4836-4845.
32. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
33. White, S. E., Habera, L. F. & Wessler, S. R. (1994). Retrotransposons in the flanking regions of normal plant genes: a role for copia-like elements in the evolution of gene structure and expression. Proc Natl Acad Sci U S A 91, 11792-11796.