메뉴 건너뛰기




Volumn 79, Issue 5, 2014, Pages 797-809

Small kernel 1 encodes a pentatricopeptide repeat protein required for mitochondrial nad7 transcript editing and seed development in maize (Zea mays) and rice (Oryza sativa)

Author keywords

Maize; Mitochondrion; Pentatricopeptide repeat protein; Seed development; Small kernel 1

Indexed keywords

AMINO ACIDS; ENCODING (SYMBOLS); GENETIC ENGINEERING; GRAIN (AGRICULTURAL PRODUCT); MITOCHONDRIA; NUCLEIC ACIDS; PLANTS (BOTANY); PROTEINS;

EID: 84906785551     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/tpj.12584     Document Type: Article
Times cited : (136)

References (89)
  • 1
    • 84874352529 scopus 로고    scopus 로고
    • Crystal structure of the entire respiratory complex i
    • Baradaran, R., Berrisford, J.M., Minhas, G.S., and, Sazanov, L.A., (2013) Crystal structure of the entire respiratory complex I. Nature, 494, 443-448.
    • (2013) Nature , vol.494 , pp. 443-448
    • Baradaran, R.1    Berrisford, J.M.2    Minhas, G.S.3    Sazanov, L.A.4
  • 2
    • 84866145891 scopus 로고    scopus 로고
    • A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins
    • Barkan, A., Rojas, M., Fujii, S., Yap, A., Chong, Y.S., Bond, C.S., and, Small, I., (2012) A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins. PLoS Genet. 8, e1002910.
    • (2012) PLoS Genet. , vol.8
    • Barkan, A.1    Rojas, M.2    Fujii, S.3    Yap, A.4    Chong, Y.S.5    Bond, C.S.6    Small, I.7
  • 3
    • 84879678855 scopus 로고    scopus 로고
    • Comprehensive high-resolution analysis of the role of an Arabidopsis gene family in RNA editing
    • Bentolila, S., Oh, J., Hanson, M.R., and, Bukowski, R., (2013) Comprehensive high-resolution analysis of the role of an Arabidopsis gene family in RNA editing. PLoS Genet. 9, e1003584.
    • (2013) PLoS Genet. , vol.9
    • Bentolila, S.1    Oh, J.2    Hanson, M.R.3    Bukowski, R.4
  • 4
    • 0035958274 scopus 로고    scopus 로고
    • Gene expression patterns in the maize caryopsis: Clues to decisions in embryo and endosperm development
    • DOI 10.1016/S0378-1119(01)00503-0, PII S0378111901005030
    • Bommert, P., and, Werr, W., (2001) Gene expression patterns in the maize caryopsis: clues to decisions in embryo and endosperm development. Gene, 271, 131-142. (Pubitemid 32545390)
    • (2001) Gene , vol.271 , Issue.2 , pp. 131-142
    • Bommert, P.1    Werr, W.2
  • 5
    • 34848855562 scopus 로고    scopus 로고
    • A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons
    • Chateigner-Boutin, A.-L., and, Small, I., (2007) A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons. Nucleic Acids Res. 35, e114.
    • (2007) Nucleic Acids Res. , vol.35
    • Chateigner-Boutin, A.-L.1    Small, I.2
  • 8
    • 84878781216 scopus 로고    scopus 로고
    • The e domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing
    • Chateigner-Boutin, A.-L., Colas des Francs-Small, C., Fujii, S., Okuda, K., Tanz, S.K., and, Small, I., (2013) The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing. Plant J. 74, 935-945.
    • (2013) Plant J. , vol.74 , pp. 935-945
    • Chateigner-Boutin, A.-L.1    Colas Des Francs-Small, C.2    Fujii, S.3    Okuda, K.4    Tanz, S.K.5    Small, I.6
  • 9
    • 0000442997 scopus 로고
    • Mutations of maize
    • Clark, J.K., and, Sheridan, F., (1991) Mutations of maize. Plant Cell, 3, 935-951.
    • (1991) Plant Cell , vol.3 , pp. 935-951
    • Clark, J.K.1    Sheridan, F.2
  • 11
    • 84885147813 scopus 로고    scopus 로고
    • Systematic study of subcellular localization of Arabidopsis PPR proteins confirms a massive targeting to organelles
    • Colcombet, J., Lopez-Obando, M., Heurtevin, L., Bernard, C., Martin, K., Berthomé, R., and, Lurin, C., (2013) Systematic study of subcellular localization of Arabidopsis PPR proteins confirms a massive targeting to organelles. RNA Biol. 10, 1557-1575.
    • (2013) RNA Biol. , vol.10 , pp. 1557-1575
    • Colcombet, J.1    Lopez-Obando, M.2    Heurtevin, L.3    Bernard, C.4    Martin, K.5    Berthomé, R.6    Lurin, C.7
  • 12
    • 33745461461 scopus 로고    scopus 로고
    • Arabidopsis GLUTAMINE-RICH PROTEIN23 is essential for early embroyogensis and encodes a novel nuclear PPR motif protein that interacts with RNA polymerase II subunit III
    • DOI 10.1105/tpc.105.039495
    • Ding, Y., Liu, N., Tang, Z., Liu, J., and, Yang, W., (2006) Arabidopsis GLUTAMINE-RICH PROTEIN23 is essential for early embryogenesis and encodes a novel nuclear PPR motif protein that interacts with RNA polymerase II subunit III. Plant Cell, 18, 815-830. (Pubitemid 43956138)
    • (2006) Plant Cell , vol.18 , Issue.4 , pp. 815-830
    • Ding, Y.-H.1    Liu, N.-Y.2    Tang, Z.-S.3    Liu, J.4    Yang, W.-C.5
  • 13
    • 0034697980 scopus 로고    scopus 로고
    • Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
    • Emanuelsson, O., Nielsen, H., Brunak, S., and, von Heijne, G., (2000) Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J. Mol. Biol. 300, 1005-1016.
    • (2000) J. Mol. Biol. , vol.300 , pp. 1005-1016
    • Emanuelsson, O.1    Nielsen, H.2    Brunak, S.3    Von Heijne, G.4
  • 14
    • 0033522445 scopus 로고    scopus 로고
    • Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression
    • DOI 10.1093/emboj/18.9.2621
    • Fisk, D.G., Walker, M.B., and, Barkan, A., (1999) Molecular cloning of the maize gene crp1 reveals similarity between regulators of mitochondrial and chloroplast gene expression. EMBO J. 18, 2621-2630. (Pubitemid 29213291)
    • (1999) EMBO Journal , vol.18 , Issue.9 , pp. 2621-2630
    • Fisk, D.G.1    Walker, M.B.2    Barkan, A.3
  • 15
    • 79957886185 scopus 로고    scopus 로고
    • Tansley review the evolution of RNA editing and pentatricopeptide repeat genes
    • Fujii, S., and, Small, I., (2011) Tansley review The evolution of RNA editing and pentatricopeptide repeat genes. New Phytol, 191, 37-47.
    • (2011) New Phytol , vol.191 , pp. 37-47
    • Fujii, S.1    Small, I.2
  • 16
    • 84884686240 scopus 로고    scopus 로고
    • Mutagenesis of individual pentatricopeptide repeat motifs affects RNA binding activity and reveals functional partitioning of Arabidopsis PROTON gradient regulation3
    • Fujii, S., Sato, N., and, Shikanai, T., (2013) Mutagenesis of individual pentatricopeptide repeat motifs affects RNA binding activity and reveals functional partitioning of Arabidopsis PROTON gradient regulation3. Plant Cell, 25, 3079-3088.
    • (2013) Plant Cell , vol.25 , pp. 3079-3088
    • Fujii, S.1    Sato, N.2    Shikanai, T.3
  • 19
    • 73249140998 scopus 로고    scopus 로고
    • A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites
    • Hammani, K., Okuda, K., Tanz, S.K., Chateigner-Boutin, A.-L., Shikanai, T., and, Small, I., (2009) A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites. Plant Cell, 21, 3686-3699.
    • (2009) Plant Cell , vol.21 , pp. 3686-3699
    • Hammani, K.1    Okuda, K.2    Tanz, S.K.3    Chateigner-Boutin, A.-L.4    Shikanai, T.5    Small, I.6
  • 20
    • 79958748899 scopus 로고    scopus 로고
    • The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria
    • Hammani, K., des Francs-Small, C.C., Takenaka, M., Tanz, S.K., Okuda, K., Shikanai, T., Brennicke, A., and, Small, I., (2011a) The pentatricopeptide repeat protein OTP87 is essential for RNA editing of nad7 and atp1 transcripts in Arabidopsis mitochondria. J. Biol. Chem. 286, 21361-21371.
    • (2011) J. Biol. Chem. , vol.286 , pp. 21361-21371
    • Hammani, K.1    Des Francs-Small, C.C.2    Takenaka, M.3    Tanz, S.K.4    Okuda, K.5    Shikanai, T.6    Brennicke, A.7    Small, I.8
  • 21
    • 79953081860 scopus 로고    scopus 로고
    • An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation
    • Hammani, K., Gobert, A., Hleibieh, K., Choulier, L., Small, I., and, Giegé, P., (2011b) An Arabidopsis dual-localized pentatricopeptide repeat protein interacts with nuclear proteins involved in gene expression regulation. Plant Cell, 23, 730-740.
    • (2011) Plant Cell , vol.23 , pp. 730-740
    • Hammani, K.1    Gobert, A.2    Hleibieh, K.3    Choulier, L.4    Small, I.5    Giegé, P.6
  • 22
    • 79952043250 scopus 로고    scopus 로고
    • A RESTORER of FERTILITY-like PPR gene is required for 5'-end processing of the nad4 mRNA in mitochondria of Arabidopsis thaliana
    • Hölzle, A., Jonietz, C., Törjek, O., Altmann, T., Binder, S., and, Forner, J., (2011) A RESTORER OF FERTILITY-like PPR gene is required for 5'-end processing of the nad4 mRNA in mitochondria of Arabidopsis thaliana. Plant J. 65, 737-744.
    • (2011) Plant J. , vol.65 , pp. 737-744
    • Hölzle, A.1    Jonietz, C.2    Törjek, O.3    Altmann, T.4    Binder, S.5    Forner, J.6
  • 23
    • 84867071659 scopus 로고    scopus 로고
    • Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing
    • Howard, M.J., Lim, W.H., Fierke, C.A., and, Koutmos, M., (2012) Mitochondrial ribonuclease P structure provides insight into the evolution of catalytic strategies for precursor-tRNA 5' processing. Proc. Natl Acad. Sci. USA, 109, 16149-16154.
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 16149-16154
    • Howard, M.J.1    Lim, W.H.2    Fierke, C.A.3    Koutmos, M.4
  • 24
    • 84863260667 scopus 로고    scopus 로고
    • The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162
    • et al.
    • Hu, J., Wang, K., Huang, W., et al. (2012) The rice pentatricopeptide repeat protein RF5 restores fertility in Hong-Lian cytoplasmic male-sterile lines via a complex with the glycine-rich protein GRP162. Plant Cell, 24, 109-122.
    • (2012) Plant Cell , vol.24 , pp. 109-122
    • Hu, J.1    Wang, K.2    Huang, W.3
  • 25
    • 84859495332 scopus 로고    scopus 로고
    • A PPR-DYW protein is required for splicing of a group II intron of cox1 pre-mRNA in Physcomitrella patens
    • Ichinose, M., Tasaki, E., Sugita, C., and, Sugita, M., (2012) A PPR-DYW protein is required for splicing of a group II intron of cox1 pre-mRNA in Physcomitrella patens. Plant J. 70, 271-278.
    • (2012) Plant J. , vol.70 , pp. 271-278
    • Ichinose, M.1    Tasaki, E.2    Sugita, C.3    Sugita, M.4
  • 26
    • 0036918322 scopus 로고    scopus 로고
    • Differential expression of alternative oxidase genes in maize mitochondrial mutants
    • DOI 10.1105/tpc.005603
    • Karpova, O.V., Kuzmin, E.V., Elthon, T.E., and, Newton, K.J., (2002) Differential expression of alternative oxidase genes in maize mitochondrial mutants. Plant Physiol. 14, 3271-3284. (Pubitemid 36029146)
    • (2002) Plant Cell , vol.14 , Issue.12 , pp. 3271-3284
    • Karpova, O.V.1    Kuzmin, E.V.2    Elthon, T.E.3    Newton, K.J.4
  • 27
    • 84890148110 scopus 로고    scopus 로고
    • Structural basis for RNA recognition by a dimeric PPR-protein complex
    • et al.
    • Ke, J., Chen, R.-Z., Ban, T., et al. (2013) Structural basis for RNA recognition by a dimeric PPR-protein complex. Nat. Struct. Mol. Biol. 20, 1377-1382.
    • (2013) Nat. Struct. Mol. Biol. , vol.20 , pp. 1377-1382
    • Ke, J.1    Chen, R.-Z.2    Ban, T.3
  • 28
    • 84864432798 scopus 로고    scopus 로고
    • NMAT1, a nuclear-encoded maturase involved in the trans-splicing of nad1 intron 1, is essential for mitochondrial complex i assembly and function
    • Keren, I., Tal, L., des Francs-Small, C.C., Araújo, W.L., Shevtsov, S., Shaya, F., Fernie, A.R., Small, I., and, Ostersetzer-Biran, O., (2012) nMAT1, a nuclear-encoded maturase involved in the trans-splicing of nad1 intron 1, is essential for mitochondrial complex I assembly and function. Plant J. 71, 413-426.
    • (2012) Plant J. , vol.71 , pp. 413-426
    • Keren, I.1    Tal, L.2    Des Francs-Small, C.C.3    Araújo, W.L.4    Shevtsov, S.5    Shaya, F.6    Fernie, A.R.7    Small, I.8    Ostersetzer-Biran, O.9
  • 29
    • 84861392616 scopus 로고    scopus 로고
    • A short PPR protein required for the splicing of specific group II introns in angiosperm chloroplasts
    • Khrouchtchova, A., Monde, R.-A., and, Barkan, A., (2012) A short PPR protein required for the splicing of specific group II introns in angiosperm chloroplasts. RNA, 18, 1197-1209.
    • (2012) RNA , vol.18 , pp. 1197-1209
    • Khrouchtchova, A.1    Monde, R.-A.2    Barkan, A.3
  • 30
    • 69249124548 scopus 로고    scopus 로고
    • Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria
    • Kim, S.-R., Yang, J.-I., Moon, S., Ryu, C.-H., An, K., Kim, K.-M., Yim, J., and, An, G., (2009) Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria. Plant J. 59, 738-749.
    • (2009) Plant J. , vol.59 , pp. 738-749
    • Kim, S.-R.1    Yang, J.-I.2    Moon, S.3    Ryu, C.-H.4    An, K.5    Kim, K.-M.6    Yim, J.7    An, G.8
  • 31
    • 77953226426 scopus 로고    scopus 로고
    • Internal architecture of mitochondrial complex i from Arabidopsis thaliana
    • Klodmann, J., Sunderhaus, S., Nimtz, M., Jänsch, L., and, Braun, H.-P., (2010) Internal architecture of mitochondrial complex I from Arabidopsis thaliana. Plant Cell, 22, 797-810.
    • (2010) Plant Cell , vol.22 , pp. 797-810
    • Klodmann, J.1    Sunderhaus, S.2    Nimtz, M.3    Jänsch, L.4    Braun, H.-P.5
  • 32
    • 80053594838 scopus 로고    scopus 로고
    • Defining the protein complex proteome of plant mitochondria
    • Klodmann, J., Senkler, M., Rode, C., and, Braun, H.-P., (2011) Defining the protein complex proteome of plant mitochondria. Plant Physiol. 157, 587-598.
    • (2011) Plant Physiol. , vol.157 , pp. 587-598
    • Klodmann, J.1    Senkler, M.2    Rode, C.3    Braun, H.-P.4
  • 34
    • 12744253474 scopus 로고    scopus 로고
    • A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts
    • Kotera, E., Tasaka, M., and, Shikanai, T., (2005) A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. Nature, 433, 326-330.
    • (2005) Nature , vol.433 , pp. 326-330
    • Kotera, E.1    Tasaka, M.2    Shikanai, T.3
  • 35
    • 80052482638 scopus 로고    scopus 로고
    • The RCC1 family protein RUG3 is required for splicing of nad2 and complex i biogenesis in mitochondria of Arabidopsis thaliana
    • Kühn, K., Carrie, C., Giraud, E., et al,. (2011) The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana. Plant J. 67, 1067-1080.
    • (2011) Plant J. , vol.67 , pp. 1067-1080
    • Kühn, K.1    Carrie, C.2    Giraud, E.3
  • 36
    • 56049084211 scopus 로고    scopus 로고
    • PPR (pentatricopeptide repeat) proteins in mammals: Important aids to mitochondrial gene expression
    • Lightowlers, R.N., and, Chrzanowska-Lightowlers, Z.M.A., (2008) PPR (pentatricopeptide repeat) proteins in mammals: important aids to mitochondrial gene expression. Biochem. J. 416, e5-e6.
    • (2008) Biochem. J. , vol.416
    • Lightowlers, R.N.1    Chrzanowska-Lightowlers, Z.M.A.2
  • 37
    • 84885135073 scopus 로고    scopus 로고
    • Human pentatricopeptide proteins: Only a few and what do they do?
    • Lightowlers, R.N., and, Chrzanowska-Lightowlers, Z.M., (2013) Human pentatricopeptide proteins: Only a few and what do they do? RNA Biol. 10, 1433-1438.
    • (2013) RNA Biol. , vol.10 , pp. 1433-1438
    • Lightowlers, R.N.1    Chrzanowska-Lightowlers, Z.M.2
  • 38
    • 84885170146 scopus 로고    scopus 로고
    • Ancient proteins with enigmatic functions PPR-SMRs
    • Liu, S., Melonek, J., Boykin, L.M., Small, I., and, Howell, K.A., (2013a) Ancient proteins with enigmatic functions PPR-SMRs. RNA Biol. 10, 1501-1510.
    • (2013) RNA Biol. , vol.10 , pp. 1501-1510
    • Liu, S.1    Melonek, J.2    Boykin, L.M.3    Small, I.4    Howell, K.A.5
  • 39
    • 84876778295 scopus 로고    scopus 로고
    • Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize
    • Liu, Y.J., Xiu, Z.H., Meeley, R., and, Tan, B.C., (2013b) Empty pericarp5 encodes a pentatricopeptide repeat protein that is required for mitochondrial RNA editing and seed development in maize. Plant Cell, 25, 868-883.
    • (2013) Plant Cell , vol.25 , pp. 868-883
    • Liu, Y.J.1    Xiu, Z.H.2    Meeley, R.3    Tan, B.C.4
  • 40
    • 33645745752 scopus 로고    scopus 로고
    • The mitochondrial compartment
    • Logan, D.C., (2006) The mitochondrial compartment. J. Exp. Bot. 57, 1225-1243.
    • (2006) J. Exp. Bot. , vol.57 , pp. 1225-1243
    • Logan, D.C.1
  • 41
    • 37449010358 scopus 로고    scopus 로고
    • The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana
    • de Longevialle, A.F., Meyer, E.H., Andrés, C., Taylor, N.L., Lurin, C., Millar, A.H., and, Small, I.D., (2007) The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 Intron 1 in Arabidopsis thaliana. Plant Cell, 19, 3256-3265.
    • (2007) Plant Cell , vol.19 , pp. 3256-3265
    • De Longevialle, A.F.1    Meyer, E.H.2    Andrés, C.3    Taylor, N.L.4    Lurin, C.5    Millar, A.H.6    Small, I.D.7
  • 43
    • 84865317500 scopus 로고    scopus 로고
    • An essential pentatricopeptide repeat protein facilitates 5' maturation and translation initiation of rps3 mRNA in maize mitochondria
    • Manavski, N., Guyon, V., Meurer, J., Wienand, U., and, Brettschneider, R., (2012) An essential pentatricopeptide repeat protein facilitates 5' maturation and translation initiation of rps3 mRNA in maize mitochondria. Plant Cell, 24, 3087-3105.
    • (2012) Plant Cell , vol.24 , pp. 3087-3105
    • Manavski, N.1    Guyon, V.2    Meurer, J.3    Wienand, U.4    Brettschneider, R.5
  • 44
    • 31844439994 scopus 로고    scopus 로고
    • Steady-state transposon mutagenesis in inbred maize
    • et al.
    • McCarty, D.R., Settles, A.M., Suzuki, M., et al. (2005) Steady-state transposon mutagenesis in inbred maize. Plant J. 44, 52-61.
    • (2005) Plant J. , vol.44 , pp. 52-61
    • McCarty, D.R.1    Settles, A.M.2    Suzuki, M.3
  • 45
    • 70349651781 scopus 로고    scopus 로고
    • Remodeled respiration in ndufs4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night
    • Meyer, E.H., Tomaz, T., Carroll, A.J., Estavillo, G., Delannoy, E., Tanz, S.K., Small, I.D., Pogson, B.J., and, Millar, A.H., (2009) Remodeled respiration in ndufs4 with low phosphorylation efficiency suppresses Arabidopsis germination and growth and alters control of metabolism at night. Plant Physiol. 151, 603-619.
    • (2009) Plant Physiol. , vol.151 , pp. 603-619
    • Meyer, E.H.1    Tomaz, T.2    Carroll, A.J.3    Estavillo, G.4    Delannoy, E.5    Tanz, S.K.6    Small, I.D.7    Pogson, B.J.8    Millar, A.H.9
  • 46
  • 47
    • 0036456491 scopus 로고    scopus 로고
    • The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of flowering plants
    • DOI 10.1007/s00438-002-0767-1
    • Notsu, Y., Masood, S., Nishikawa, T., Kubo, N., Akiduki, G., Nakazono, M., Hirai, A., and, Kadowaki, K., (2002) The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol. Genet. Genomics, 268, 434-445. (Pubitemid 35435847)
    • (2002) Molecular Genetics and Genomics , vol.268 , Issue.4 , pp. 434-445
    • Notsu, Y.1    Masood, S.2    Nishikawa, T.3    Kubo, N.4    Akiduki, G.5    Nakazono, M.6    Hirai, A.7    Kadowaki, K.8
  • 48
    • 62549149035 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts
    • et al.
    • Okuda, K., Chateigner-Boutin, A.-L., Nakamura, T., et al. (2009) Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts. Plant Cell, 21, 146-156.
    • (2009) Plant Cell , vol.21 , pp. 146-156
    • Okuda, K.1    Chateigner-Boutin, A.-L.2    Nakamura, T.3
  • 49
    • 73849142685 scopus 로고    scopus 로고
    • The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts
    • et al.
    • Okuda, K., Hammani, K., Tanz, S.K., et al. (2010) The pentatricopeptide repeat protein OTP82 is required for RNA editing of plastid ndhB and ndhG transcripts. Plant J. 61, 339-349.
    • (2010) Plant J. , vol.61 , pp. 339-349
    • Okuda, K.1    Hammani, K.2    Tanz, S.K.3
  • 50
    • 0033402539 scopus 로고    scopus 로고
    • Increased respiratory restriction during phosphate-limited growth in transgenic tobacco cells lacking alternative oxidase
    • Parsons, H.L., Yip, J.Y., and, Vanlerberghe, G.C., (1999) Increased respiratory restriction during phosphate-limited growth in transgenic tobacco cells lacking alternative oxidase. Plant Physiol. 121, 1309-1320. (Pubitemid 30018517)
    • (1999) Plant Physiology , vol.121 , Issue.4 , pp. 1309-1320
    • Parsons, H.L.1    Yip, J.Y.H.2    Vanlerberghe, G.C.3
  • 52
    • 22544469721 scopus 로고    scopus 로고
    • Targeting the NAD7 subunit to mitochondria restores a functional complex I and a wild type phenotype in the Nicotiana sylvestris CMS II mutant lacking nad7
    • DOI 10.1074/jbc.M500508200
    • Pineau, B., Mathieu, C., Gérard-Hirne, C., De Paepe, R., and, Chétrit, P., (2005) Targeting the NAD7 subunit to mitochondria restores a functional complex I and a wild type phenotype in the Nicotiana sylvestris CMS II mutant lacking nad7. J. Biol. Chem. 280, 25994-26001. (Pubitemid 41022189)
    • (2005) Journal of Biological Chemistry , vol.280 , Issue.28 , pp. 25994-26001
    • Pineau, B.1    Mathieu, C.2    Gerard-Hirne, C.3    De Paepe, R.4    Chetrit, P.5
  • 53
    • 52649136147 scopus 로고    scopus 로고
    • A member of the Whirly family is multifunctional RNA- and DNA-bingding protein that is essential for chloroplast biogenesis
    • Prikryl, J., Watkins, K.P., Friso, G., Wijk, K.J., and, Barkan, A., (2008) A member of the Whirly family is multifunctional RNA- and DNA-bingding protein that is essential for chloroplast biogenesis. Nucleic Acids Res. 36, 5152-5165.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 5152-5165
    • Prikryl, J.1    Watkins, K.P.2    Friso, G.3    Wijk, K.J.4    Barkan, A.5
  • 54
    • 78651068887 scopus 로고    scopus 로고
    • Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein
    • Prikryl, J., Rojas, M., Schuster, G., and, Barkan, A., (2011) Mechanism of RNA stabilization and translational activation by a pentatricopeptide repeat protein. Proc. Natl Acad. Sci. USA, 108, 415-420.
    • (2011) Proc. Natl Acad. Sci. USA , vol.108 , pp. 415-420
    • Prikryl, J.1    Rojas, M.2    Schuster, G.3    Barkan, A.4
  • 55
    • 0019443447 scopus 로고
    • The anatomy and taxonomy of protein structure
    • Richardson, J.S., (1981) The anatomy and taxonomy of protein structure. Adv. Protein Chem. 34, 167-339.
    • (1981) Adv. Protein Chem. , vol.34 , pp. 167-339
    • Richardson, J.S.1
  • 57
    • 77954065271 scopus 로고    scopus 로고
    • I-TASSER: A unified platform for automated protein structure and function prediction
    • Roy, A., Kucukural, A., and, Zhang, Y., (2010) I-TASSER: a unified platform for automated protein structure and function prediction. Nat. Protoc. 5, 725-738.
    • (2010) Nat. Protoc. , vol.5 , pp. 725-738
    • Roy, A.1    Kucukural, A.2    Zhang, Y.3
  • 59
    • 84885661266 scopus 로고    scopus 로고
    • A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype
    • Schallenberg-Rüdinger, M., Kindgren, P., Zehrmann, A., Small, I., and, Knoop, V., (2013) A DYW-protein knockout in Physcomitrella affects two closely spaced mitochondrial editing sites and causes a severe developmental phenotype. Plant J. 76, 420-432.
    • (2013) Plant J. , vol.76 , pp. 420-432
    • Schallenberg-Rüdinger, M.1    Kindgren, P.2    Zehrmann, A.3    Small, I.4    Knoop, V.5
  • 60
    • 84860372514 scopus 로고    scopus 로고
    • L-galactono-1,4-lactone dehydrogenase (GLDH) forms part of three subcomplexes of mitochondrial complex i in Arabidopsis thaliana
    • Schertl, P., Sunderhaus, S., Klodmann, J., Grozeff, G.E.G., Bartoli, C.G., and, Braun, H.-P., (2012) L-galactono-1,4-lactone dehydrogenase (GLDH) forms part of three subcomplexes of mitochondrial complex I in Arabidopsis thaliana. J. Biol. Chem. 287, 14412-14419.
    • (2012) J. Biol. Chem. , vol.287 , pp. 14412-14419
    • Schertl, P.1    Sunderhaus, S.2    Klodmann, J.3    Grozeff, G.E.G.4    Bartoli, C.G.5    Braun, H.-P.6
  • 61
    • 56549095978 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins: A socket set for organelle gene expression
    • Schmitz-Linneweber, C., and, Small, I., (2008) Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci. 13, 663-670.
    • (2008) Trends Plant Sci. , vol.13 , pp. 663-670
    • Schmitz-Linneweber, C.1    Small, I.2
  • 62
    • 33750967640 scopus 로고    scopus 로고
    • A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA
    • DOI 10.1105/tpc.106.046110
    • Schmitz-Linneweber, C., Williams-Carrier, R.E., Williams-Voelker, P.M., Kroeger, T.S., Vichas, A., and, Barkan, A., (2006) A pentatricopeptide repeat protein facilitates the trans-splicing of the maize chloroplast rps12 pre-mRNA. Plant Cell, 18, 2650-2663. (Pubitemid 44749895)
    • (2006) Plant Cell , vol.18 , Issue.10 , pp. 2650-2663
    • Schmitz-Linneweber, C.1    Williams-Carrier, R.E.2    Williams-Voelker, P.M.3    Kroeger, T.S.4    Vichas, A.5    Barkan, A.6
  • 63
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • et al.
    • Schnable, P.S., Ware, D., Fulton, R.S., et al. (2009) The B73 maize genome: complexity, diversity, and dynamics. Science, 326, 1112-1115.
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1    Ware, D.2    Fulton, R.S.3
  • 64
    • 84878270449 scopus 로고    scopus 로고
    • Embryo defective12 encodes the plastid initiation factor 3 and is essential for embryogenesis in maize
    • Shen, Y., Li, C., McCarty, D.R., Meeley, R., and, Tan, B.-C., (2013) Embryo defective12 encodes the plastid initiation factor 3 and is essential for embryogenesis in maize. Plant J. 74, 792-804.
    • (2013) Plant J. , vol.74 , pp. 792-804
    • Shen, Y.1    Li, C.2    McCarty, D.R.3    Meeley, R.4    Tan, B.-C.5
  • 65
    • 0033965922 scopus 로고    scopus 로고
    • The PPR motif - A TPR-related motif prevalent in plant organellar proteins
    • Small, I.D., and, Peeters, N., (2000) The PPR motif-a TPR-related motif prevalent in plant organellar proteins. Trends Biochem. Sci. 25, 45-47.
    • (2000) Trends Biochem. Sci. , vol.25 , pp. 45-47
    • Small, I.D.1    Peeters, N.2
  • 66
    • 2942589051 scopus 로고    scopus 로고
    • Predotar: A tool for rapidly screening proteomes for N-terminal targeting sequences
    • DOI 10.1002/pmic.200300776
    • Small, I., Peeters, N., Legeai, F., and, Lurin, C., (2004) Predotar: a tool for rapidly screening proteomes for N-terminal targeting sequences. Proteomics, 4, 1581-1590. (Pubitemid 38738317)
    • (2004) Proteomics , vol.4 , Issue.6 , pp. 1581-1590
    • Small, I.1    Peeters, N.2    Legeai, F.3    Lurin, C.4
  • 67
    • 84867569533 scopus 로고    scopus 로고
    • PPR8522 encodes a chloroplast-targeted pentatricopeptide repeat protein necessary for maize embryogenesis and vegetative development
    • Sosso, D., Canut, M., Gendrot, G., Dedieu, A., Chambrier, P., Barkan, A., Consonni, G., and, Rogowsky, P.M., (2012a) PPR8522 encodes a chloroplast-targeted pentatricopeptide repeat protein necessary for maize embryogenesis and vegetative development. J. Exp. Bot. 63, 5843-5857.
    • (2012) J. Exp. Bot. , vol.63 , pp. 5843-5857
    • Sosso, D.1    Canut, M.2    Gendrot, G.3    Dedieu, A.4    Chambrier, P.5    Barkan, A.6    Consonni, G.7    Rogowsky, P.M.8
  • 68
    • 84859084955 scopus 로고    scopus 로고
    • PPR2263, a DYW-Subgroup Pentatricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis, and maize growth
    • et al.
    • Sosso, D., Mbelo, S., Vernoud, V., et al. (2012b) PPR2263, a DYW-Subgroup Pentatricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis, and maize growth. Plant Cell, 24, 676-691.
    • (2012) Plant Cell , vol.24 , pp. 676-691
    • Sosso, D.1    Mbelo, S.2    Vernoud, V.3
  • 69
    • 75949104310 scopus 로고    scopus 로고
    • MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis
    • Takenaka, M., (2010) MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis. Plant Physiol. 152, 939-947.
    • (2010) Plant Physiol. , vol.152 , pp. 939-947
    • Takenaka, M.1
  • 70
    • 84859475178 scopus 로고    scopus 로고
    • Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants
    • Takenaka, M., Zehrmann, A., Verbitskiy, D., Kugelmann, M., Härtel, B., and, Brennicke, A., (2012) Multiple organellar RNA editing factor (MORF) family proteins are required for RNA editing in mitochondria and plastids of plants. Proc. Natl Acad. Sci. USA, 109, 5104-5109.
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 5104-5109
    • Takenaka, M.1    Zehrmann, A.2    Verbitskiy, D.3    Kugelmann, M.4    Härtel, B.5    Brennicke, A.6
  • 71
    • 84878784240 scopus 로고    scopus 로고
    • Improved computational target site prediction for pentatricopeptide repeat RNA editing factors
    • Takenaka, M., Zehrmann, A., Brennicke, A., and, Graichen, K., (2013a) Improved computational target site prediction for pentatricopeptide repeat RNA editing factors. PLoS ONE, 8, e65343.
    • (2013) PLoS ONE , vol.8
    • Takenaka, M.1    Zehrmann, A.2    Brennicke, A.3    Graichen, K.4
  • 73
    • 84876758681 scopus 로고    scopus 로고
    • Identification of an active new mutator transposable element in maize
    • Tan, B.C., Chen, Z., Shen, Y., Zhang, Y., Lai, J., and, Sun, S.S.M., (2011) Identification of an active new mutator transposable element in maize. G3 (Bethesda), 1, 293-302.
    • (2011) G3 (Bethesda) , vol.1 , pp. 293-302
    • Tan, B.C.1    Chen, Z.2    Shen, Y.3    Zhang, Y.4    Lai, J.5    Sun, S.S.M.6
  • 74
    • 77952149904 scopus 로고    scopus 로고
    • The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript
    • Tasaki, E., Hattori, M., and, Sugita, M., (2010) The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript. Plant J. 62, 560-570.
    • (2010) Plant J. , vol.62 , pp. 560-570
    • Tasaki, E.1    Hattori, M.2    Sugita, M.3
  • 76
    • 84868191956 scopus 로고    scopus 로고
    • Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria
    • Toda, T., Fujii, S., Noguchi, K., Kazama, T., and, Toriyama, K., (2012) Rice MPR25 encodes a pentatricopeptide repeat protein and is essential for RNA editing of nad5 transcripts in mitochondria. Plant J. 72, 450-460.
    • (2012) Plant J. , vol.72 , pp. 450-460
    • Toda, T.1    Fujii, S.2    Noguchi, K.3    Kazama, T.4    Toriyama, K.5
  • 78
    • 79960382904 scopus 로고    scopus 로고
    • The PPR-DYW proteins are required for RNA editing of rps14, cox1 and nad5 transcripts in Physcomitrella patens mitochondria
    • Uchida, M., Ohtani, S., Ichinose, M., Sugita, C., and, Sugita, M., (2011) The PPR-DYW proteins are required for RNA editing of rps14, cox1 and nad5 transcripts in Physcomitrella patens mitochondria. FEBS Lett. 585, 2367-2371.
    • (2011) FEBS Lett. , vol.585 , pp. 2367-2371
    • Uchida, M.1    Ohtani, S.2    Ichinose, M.3    Sugita, C.4    Sugita, M.5
  • 79
    • 0031021278 scopus 로고    scopus 로고
    • The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides
    • Unseld, M., Marienfeld, J.R., Brandt, P., and, Brennicke, A., (1997) The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat. Genet. 15, 57-61.
    • (1997) Nat. Genet. , vol.15 , pp. 57-61
    • Unseld, M.1    Marienfeld, J.R.2    Brandt, P.3    Brennicke, A.4
  • 80
    • 84874588115 scopus 로고    scopus 로고
    • Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants
    • Yagi, Y., Hayashi, S., Kobayashi, K., Hirayama, T., and, Nakamura, T., (2013a) Elucidation of the RNA recognition code for pentatricopeptide repeat proteins involved in organelle RNA editing in plants. PLoS ONE, 8, e57286.
    • (2013) PLoS ONE , vol.8
    • Yagi, Y.1    Hayashi, S.2    Kobayashi, K.3    Hirayama, T.4    Nakamura, T.5
  • 81
    • 84929517201 scopus 로고    scopus 로고
    • Pentatricopeptide repeat proteins involved in plant organellar RNA editing
    • Yagi, Y., Tachikawa, M., Noguchi, H., Satoh, S., Obokata, J., and, Nakamura, T., (2013b) Pentatricopeptide repeat proteins involved in plant organellar RNA editing. RNA Biol. 10, 1419-1425.
    • (2013) RNA Biol. , vol.10 , pp. 1419-1425
    • Yagi, Y.1    Tachikawa, M.2    Noguchi, H.3    Satoh, S.4    Obokata, J.5    Nakamura, T.6
  • 82
    • 84889567382 scopus 로고    scopus 로고
    • Structural basis for the modular recognition of single-stranded RNA by PPR proteins
    • et al.
    • Yin, P., Li, Q., Yan, C., et al. (2013) Structural basis for the modular recognition of single-stranded RNA by PPR proteins. Nature, 504, 168-171.
    • (2013) Nature , vol.504 , pp. 168-171
    • Yin, P.1    Li, Q.2    Yan, C.3
  • 83
    • 84862778018 scopus 로고    scopus 로고
    • Functional disruption of the pentatricopeptide protein SLG1 affects mitochondrial RNA editing, plant development, and responses to abiotic stresses in Arabidopsis
    • Yuan, H., and, Liu, D., (2012) Functional disruption of the pentatricopeptide protein SLG1 affects mitochondrial RNA editing, plant development, and responses to abiotic stresses in Arabidopsis. Plant J. 70, 432-444.
    • (2012) Plant J. , vol.70 , pp. 432-444
    • Yuan, H.1    Liu, D.2
  • 84
    • 64749105292 scopus 로고    scopus 로고
    • A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana
    • Zehrmann, A., Verbitskiy, D., van der Merwe, J.A., Brennicke, A., and, Takenaka, M., (2009) A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana. Plant Cell, 21, 558-567.
    • (2009) Plant Cell , vol.21 , pp. 558-567
    • Zehrmann, A.1    Verbitskiy, D.2    Van Der Merwe, J.A.3    Brennicke, A.4    Takenaka, M.5
  • 85
    • 85044709404 scopus 로고    scopus 로고
    • The DYW-class PPR protein MEF7 is required for RNA editing at four sites in mitochondria of Arabidopsis thaliana
    • Zehrmann, A., Van Der Merwe, J.A., Verbitskiy, D., Brennicke, A., and, Takenaka, M., (2012) The DYW-class PPR protein MEF7 is required for RNA editing at four sites in mitochondria of Arabidopsis thaliana. RNA Biol. 41, 155-161.
    • (2012) RNA Biol. , vol.41 , pp. 155-161
    • Zehrmann, A.1    Van Der Merwe, J.A.2    Verbitskiy, D.3    Brennicke, A.4    Takenaka, M.5
  • 86
    • 28244445008 scopus 로고    scopus 로고
    • RMD: A rice mutant database for functional analysis of the rice genome
    • Zhang, J., Li, C., Wu, C., Xiong, L., Chen, G., Zhang, Q., and, Wang, S., (2006) RMD: a rice mutant database for functional analysis of the rice genome. Nucleic Acids Res. 34, D745-D748.
    • (2006) Nucleic Acids Res. , vol.34
    • Zhang, J.1    Li, C.2    Wu, C.3    Xiong, L.4    Chen, G.5    Zhang, Q.6    Wang, S.7
  • 87
    • 84879529924 scopus 로고    scopus 로고
    • The requirement of WHIRLY1 for embryogenesis is dependent on genetic background in maize
    • Zhang, Y.F., Hou, M.M., and, Tan, B.C., (2013) The requirement of WHIRLY1 for embryogenesis is dependent on genetic background in maize. PLoS ONE, 8, e67369.
    • (2013) PLoS ONE , vol.8
    • Zhang, Y.F.1    Hou, M.M.2    Tan, B.C.3
  • 88
    • 84865485271 scopus 로고    scopus 로고
    • SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism
    • et al.
    • Zhu, Q., Dugardeyn, J., Zhang, C., et al. (2012) SLO2, a mitochondrial pentatricopeptide repeat protein affecting several RNA editing sites, is required for energy metabolism. Plant J. 71, 836-849.
    • (2012) Plant J. , vol.71 , pp. 836-849
    • Zhu, Q.1    Dugardeyn, J.2    Zhang, C.3
  • 89
    • 84868471721 scopus 로고    scopus 로고
    • The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplast atpB/E mRNA
    • Zoschke, R., Kroeger, T., Belcher, S., Schöttler, M.A., Barkan, A., and, Schmitz-Linneweber, C., (2012) The pentatricopeptide repeat-SMR protein ATP4 promotes translation of the chloroplast atpB/E mRNA. Plant J. 72, 547-558.
    • (2012) Plant J. , vol.72 , pp. 547-558
    • Zoschke, R.1    Kroeger, T.2    Belcher, S.3    Schöttler, M.A.4    Barkan, A.5    Schmitz-Linneweber, C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.