메뉴 건너뛰기




Volumn 268, Issue 4, 2002, Pages 434-445

The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of flowering plants

Author keywords

Mitochondrial genome; Monocots; Rice; RNA editing; Sequence transfer

Indexed keywords

COMPLEMENTARY DNA; DNA FRAGMENT; GENOMIC DNA; RIBOSOME PROTEIN; RIBOSOME RNA; TRANSFER RNA;

EID: 0036456491     PISSN: 16174615     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00438-002-0767-1     Document Type: Article
Times cited : (445)

References (36)
  • 1
    • 0025183708 scopus 로고
    • Basic local alignment search tool
    • Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403-410
    • (1990) J Mol Biol , vol.215 , pp. 403-410
    • Lipman, D.J.1
  • 2
    • 0035963534 scopus 로고    scopus 로고
    • Wheat mitochondria ccmB encodes the membrane domain of a putative ABC transporter involved in cytochrome c biogenesis
    • Faivre-Nitschke SE, Nazoa P, Gualberto JM, Grienenberger JM, Bonnard G (2001) Wheat mitochondria ccmB encodes the membrane domain of a putative ABC transporter involved in cytochrome c biogenesis. Biochim Biophys Acta 1519:199-208
    • (2001) Biochim Biophys Acta , vol.1519 , pp. 199-208
    • Faivre-Nitschke, S.E.1    Nazoa, P.2    Gualberto, J.M.3    Grienenberger, J.M.4    Bonnard, G.5
  • 3
    • 0037023349 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. japonica)
    • Goff SA, Ricke D, Lan TH, Presting G, Wang R, Dunn M, et al. (2002) A draft sequence of the rice genome ( Oryza satriva L. ssp. japonica) Science 296:92-100
    • (2002) Science , vol.296 , pp. 92-100
    • Goff, S.A.1    Ricke, D.2    Lan, T.H.3    Presting, G.4    Wang, R.5    Dunn, M.6
  • 5
    • 0031864555 scopus 로고    scopus 로고
    • Genes for the ribosomal S4 protein encoded in higher plant mitochondria are transcribed, edited, and translated
    • Handa H, Kubo N, Kadowaki K (1998) Genes for the ribosomal S4 protein encoded in higher plant mitochondria are transcribed, edited, and translated. Mol Gen Genet 258:199-207
    • (1998) Mol Gen Genet , vol.258 , pp. 199-207
    • Handa, H.1    Kubo, N.2    Kadowaki, K.3
  • 7
    • 0000835448 scopus 로고
    • Excess RNA editing in rice mitochondrial atp9 transcripts
    • Ishikawa M, Kadowaki K (1993) Excess RNA editing in rice mitochondrial atp9 transcripts. Plant Cell Physiol 34:959-963
    • (1993) Plant Cell Physiol , vol.34 , pp. 959-963
    • Ishikawa, M.1    Kadowaki, K.2
  • 8
    • 0029802498 scopus 로고    scopus 로고
    • RNA editing of transcripts of the gene for apocytochrome b (cob) in rice mitochondria
    • Ito Y, Nakazono M, Kadowaki K, Tsutsumi N, Hirai A (1996) RNA editing of transcripts of the gene for apocytochrome b (cob) in rice mitochondria. Genes Genet Syst 71:85-89
    • (1996) Genes Genet Syst , vol.71 , pp. 85-89
    • Ito, Y.1    Nakazono, M.2    Kadowaki, K.3    Tsutsumi, N.4    Hirai, A.5
  • 10
    • 0001702096 scopus 로고
    • Differential organization of mitochondrial genes in rice with normal and male-sterile cytoplasms
    • Kadowaki K, Harada K (1989) Differential organization of mitochondrial genes in rice with normal and male-sterile cytoplasms. Japan J Breed 39:179-186
    • (1989) Japan J Breed , vol.39 , pp. 179-186
    • Kadowaki, K.1    Harada, K.2
  • 12
    • 0025049044 scopus 로고
    • A chimeric gene containing the 5′ portion of atp6 is associated with cytoplasmic malesterility of rice
    • Kadowaki K, Suzuki T, Kazama S (1990) A chimeric gene containing the 5′ portion of atp6 is associated with cytoplasmic malesterility of rice. Mol Gen Genet 224:10-16
    • (1990) Mol Gen Genet , vol.224 , pp. 10-16
    • Kadowaki, K.1    Suzuki, T.2    Kazama, S.3
  • 13
    • 0029822746 scopus 로고    scopus 로고
    • Targeting pre-sequence acquisition after mitochondrial gene transfer to the nucleus occurs by duplication of existing targeting signals
    • Kadowaki K, Kubo N, Ozawa K, Hirai A (1996) Targeting pre-sequence acquisition after mitochondrial gene transfer to the nucleus occurs by duplication of existing targeting signals. EMBO J 15:6652-6661
    • (1996) EMBO J , vol.15 , pp. 6652-6661
    • Kadowaki, K.1    Kubo, N.2    Ozawa, K.3    Hirai, A.4
  • 14
    • 0029670967 scopus 로고    scopus 로고
    • copia-, gypsy- and LINE-like retrotrans-poson fragments in the mitochondrial genome of Arabidopsis thaliana
    • Knoop V, Unseld M, Marienfeld M, Brandt P, Sünkel S, Ullrich H, Brennicke A (1996) copia-, gypsy- and LINE-like retrotransposon fragments in the mitochondrial genome of Arabidopsis thaliana. Genetics 142:579-585
    • (1996) Genetics , vol.142 , pp. 579-585
    • Knoop, V.1    Unseld, M.2    Marienfeld, M.3    Brandt, P.4    Sünkel, S.5    Ullrich, H.6    Brennicke, A.7
  • 15
    • 0030801120 scopus 로고    scopus 로고
    • Involvement of 5″ flanking sequence for specifying RNA editing sites in plant mitochondria
    • Kubo N, Kadowaki K (1997) Involvement of 5′ flanking sequence for specifying RNA editing sites in plant mitochondria. FEBS Lett 413:40-44
    • (1997) FEBS Lett , vol.413 , pp. 40-44
    • Kubo, N.1    Kadowaki, K.2
  • 16
    • 0030198881 scopus 로고    scopus 로고
    • A ribosomal protein L2 gene is transcribed, spliced, and edited at one site in rice mitochondria
    • Kubo N, Ozawa K, Hino T, Kadowaki K (1996) A ribosomal protein L2 gene is transcribed, spliced, and edited at one site in rice mitochondria. Plant Mol Biol 31:853-862
    • (1996) Plant Mol Biol , vol.31 , pp. 853-862
    • Kubo, N.1    Ozawa, K.2    Hino, T.3    Kadowaki, K.4
  • 17
    • 0033529792 scopus 로고    scopus 로고
    • A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: Common use of the same mitochondrial targeting signal for different proteins
    • Kubo N, Harada K, Hirai A, Kadowaki K (1999) A single nuclear transcript encoding mitochondrial RPS14 and SDHB of rice is processed by alternative splicing: Common use of the same mitochondrial targeting signal for different proteins. Proc Natl Acad Sci USA 96:9207-9211
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 9207-9211
    • Kubo, N.1    Harada, K.2    Hirai, A.3    Kadowaki, K.4
  • 18
    • 0033799602 scopus 로고    scopus 로고
    • Transfer of the mitochondrial rps10 gene to the nucleus in rice: Acquisition of the 5′ untranslated region followed by gene duplication
    • Kubo N, Jordana X, Ozawa K, Zanlungo S, Harada K, Sasaki T, Kadowaki K (2000a) Transfer of the mitochondrial rps10 gene to the nucleus in rice: Acquisition of the 5′ untranslated region followed by gene duplication. Mol Gen Genet 263:733-739
    • (2000) Mol Gen Genet , vol.263 , pp. 733-739
    • Kubo, N.1    Jordana, X.2    Ozawa, K.3    Zanlungo, S.4    Harada, K.5    Sasaki, T.6    Kadowaki, K.7
  • 19
    • 0034235831 scopus 로고    scopus 로고
    • The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA)
    • Kubo T, Nishizawa S, Sugawara A, Itchoda N, Estiati A, Mikami T (2000b) The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA). Nucleic Acids Res 28:2571-2576
    • (2000) Nucleic Acids Res , vol.28 , pp. 2571-2576
    • Kubo, T.1    Nishizawa, S.2    Sugawara, A.3    Itchoda, N.4    Estiati, A.5    Mikami, T.6
  • 20
    • 0012016995 scopus 로고    scopus 로고
    • Transcription and editing status of ribosomal protein S2 gene in rice mitochondria
    • Kubo N, Hirai A, Kadowaki K (2001) Transcription and editing status of ribosomal protein S2 gene in rice mitochondria. Rice Genet Newslett 18:75-77
    • (2001) Rice Genet Newslett , vol.18 , pp. 75-77
    • Kubo, N.1    Hirai, A.2    Kadowaki, K.3
  • 21
    • 0033066718 scopus 로고    scopus 로고
    • REPuter: Fast computation of maximal repeats in complete genomes
    • Kurtz S, Schleiermacher C (1999) REPuter: Fast computation of maximal repeats in complete genomes. Bioinformatics15:426-427
    • (1999) Bioinformatics , vol.15 , pp. 426-427
    • Kurtz, S.1    Schleiermacher, C.2
  • 22
    • 0020842563 scopus 로고
    • Maize mitochondrial DNA contains a sequence homologous to the ribulose-1,5-bisphosphate carboxylase large subunit gene of chloroplast DNA
    • Lonsdale DM, Hodge TP, Howe CJ, Stern DB (1983) Maize mitochondrial DNA contains a sequence homologous to the ribulose-1,5-bisphosphate carboxylase large subunit gene of chloroplast DNA. Cell 34:1007-1014
    • (1983) Cell , vol.34 , pp. 1007-1014
    • Lonsdale, D.M.1    Hodge, T.P.2    Howe, C.J.3    Stern, D.B.4
  • 23
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR (1997) tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955-964
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 24
    • 0031671173 scopus 로고    scopus 로고
    • Transcription of plastid-derived tRNA genes in rice mitochondria
    • Miyata S, Nakazono M, Hirai A (1998) Transcription of plastid-derived tRNA genes in rice mitochondria. Curr Genet 34:216-220
    • (1998) Curr Genet , vol.34 , pp. 216-220
    • Miyata, S.1    Nakazono, M.2    Hirai, A.3
  • 25
    • 0027535724 scopus 로고
    • Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice
    • Nakazono M, Hirai A (1993) Identification of the entire set of transferred chloroplast DNA sequences in the mitochondrial genome of rice. Mol Gen Genet 236:341-346
    • (1993) Mol Gen Genet , vol.236 , pp. 341-346
    • Nakazono, M.1    Hirai, A.2
  • 26
    • 0030118662 scopus 로고    scopus 로고
    • The gene for a subunit of an ABC-type heme transporter is transcribed together with the gene for subunit 6 of NADH dehydrogenase in rice mitochondria
    • Nakazono M, Ito Y, Tsutsumi N, Hirai A (1996) The gene for a subunit of an ABC-type heme transporter is transcribed together with the gene for subunit 6 of NADH dehydrogenase in rice mitochondria. Curr Genet 29:412-416
    • (1996) Curr Genet , vol.29 , pp. 412-416
    • Nakazono, M.1    Ito, Y.2    Tsutsumi, N.3    Hirai, A.4
  • 28
    • 0033615372 scopus 로고    scopus 로고
    • Complete structure of the chloroplast genome of Arabidopsis thaliana
    • Sato S, Nakamura Y, Kaneko T, Asamizu E, Tabata S (1999) Complete structure of the chloroplast genome of Arabidopsis thaliana. DNA Res 6:283-290
    • (1999) DNA Res , vol.6 , pp. 283-290
    • Sato, S.1    Nakamura, Y.2    Kaneko, T.3    Asamizu, E.4    Tabata, S.5
  • 29
    • 0028087047 scopus 로고
    • The plant mitochondrial genome: Physical structure, information content, RNA editing, and gene migration to the nucleus
    • Schuster W, Brennicke A (1994) The plant mitochondrial genome: Physical structure, information content, RNA editing, and gene migration to the nucleus. Annu Rev Plant Physiol Plant Mol Biol 45:61-78
    • (1994) Annu Rev Plant Physiol Plant Mol Biol , vol.45 , pp. 61-78
    • Schuster, W.1    Brennicke, A.2
  • 30
    • 0035942234 scopus 로고    scopus 로고
    • Complex mt DNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: Implication of potential sequencing errors caused by large-unit repeats
    • Stupar RM, Lilly JW, Town CD, Cheng Z, Kaul S, Buell CR, Jiang J (2001) Complex mt DNA constitutes an approximate 620-kb insertion on Arabidopsis thaliana chromosome 2: Implication of potential sequencing errors caused by large-unit repeats. Proc Natl Acad Sci USA 98:5099-5103
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5099-5103
    • Stupar, R.M.1    Lilly, J.W.2    Town, C.D.3    Cheng, Z.4    Kaul, S.5    Buell, C.R.6    Jiang, J.7
  • 31
    • 0034978721 scopus 로고    scopus 로고
    • Truncated and dispersed rpl2 and rps19 pseudogenes are co-transcribed with neighbouring downstream genes in wheat mitochondria
    • Subramanian S, Fallahi M, Bonen L (2001) Truncated and dispersed rpl2 and rps19 pseudogenes are co-transcribed with neighbouring downstream genes in wheat mitochondria. Curr Genet 39:264-272
    • (2001) Curr Genet , vol.39 , pp. 264-272
    • Subramanian, S.1    Fallahi, M.2    Bonen, L.3
  • 32
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative (2002) Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 408:796-815
    • (2002) Nature , vol.408 , pp. 796-815
  • 33
    • 0031021278 scopus 로고    scopus 로고
    • The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides
    • Unseld M, Marienfeld JR, Brandt P, Brennicke A (1997) The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat Genet 15:57-61
    • (1997) Nat Genet , vol.15 , pp. 57-61
    • Unseld, M.1    Marienfeld, J.R.2    Brandt, P.3    Brennicke, A.4
  • 34
    • 0036009910 scopus 로고    scopus 로고
    • A comprehensive rice transcript map containing 6591 expressed sequence tag sites
    • Wu J, et al (2002) A comprehensive rice transcript map containing 6591 expressed sequence tag sites. Plant Cell 14:525-535
    • (2002) Plant Cell , vol.14 , pp. 525-535
    • Wu, J.1
  • 35
    • 0037023384 scopus 로고    scopus 로고
    • A draft sequence of the rice genome (Oryza sativa L. ssp. indica)
    • Yu J, et al. (2002) A draft sequence of the rice genome (Oryza sativa L. ssp. indica). Science 296:79-91
    • (2002) Science , vol.296 , pp. 79-91
    • Yu, J.1
  • 36
    • 0030175004 scopus 로고    scopus 로고
    • A promiscuous choroplast DNA fragment is transcribed in plant mitochondria but the encoded RNA is not edited
    • Zeltz P, Kadowaki K, Kubo N, Maier RM, Hirai A, Kössel H (1996) A promiscuous choroplast DNA fragment is transcribed in plant mitochondria but the encoded RNA is not edited. Plant Mol Biol 31:647-656
    • (1996) Plant Mol Biol , vol.31 , pp. 647-656
    • Zeltz, P.1    Kadowaki, K.2    Kubo, N.3    Maier, R.M.4    Hirai, A.5    Kössel, H.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.