-
1
-
-
84857734775
-
Uridine insertion/deletion editing in trypanosomes: A playground for RNA-guided information transfer
-
Aphasizhev R, Aphasizheva I. 2011. Uridine insertion/deletion editing in trypanosomes: a playground for RNA-guided information transfer. Wiley Interdiscip. Rev. RNA 2:669-85
-
(2011)
Wiley Interdiscip. Rev. RNA
, vol.2
, pp. 669-685
-
-
Aphasizhev, R.1
Aphasizheva, I.2
-
2
-
-
0034016127
-
In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants
-
Aubourg S, Boudet N, Kreis M, Lecharny A. 2000. In Arabidopsis thaliana, 1% of the genome codes for a novel protein family unique to plants. Plant Mol. Biol. 42:603-13
-
(2000)
Plant Mol. Biol.
, vol.42
, pp. 603-613
-
-
Aubourg, S.1
Boudet, N.2
Kreis, M.3
Lecharny, A.4
-
3
-
-
84866145891
-
A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins
-
Barkan A, Rojas M, Fujii S, Yap A, Chong YS, et al. 2012. A combinatorial amino acid code for RNA recognition by pentatricopeptide repeat proteins. PLoS Genet. 8:e1002910
-
(2012)
PLoS Genet.
, vol.8
-
-
Barkan, A.1
Rojas, M.2
Fujii, S.3
Yap, A.4
Chong, Y.S.5
-
4
-
-
45149125708
-
Genetic architecture of mitochondrial editing in Arabidopsis thaliana
-
Bentolila S, Elliott LE, Hanson MR. 2008. Genetic architecture of mitochondrial editing in Arabidopsis thaliana. Genetics 178:1693-708
-
(2008)
Genetics
, vol.178
, pp. 1693-1708
-
-
Bentolila, S.1
Elliott, L.E.2
Hanson, M.R.3
-
5
-
-
84861873504
-
RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing
-
Bentolila S, Heller WP, Sun T, Babina AM, Friso G, et al. 2012. RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing. Proc. Natl. Acad. Sci. USA 109:E1453-61
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
-
-
Bentolila, S.1
Heller, W.P.2
Sun, T.3
Babina, A.M.4
Friso, G.5
-
6
-
-
0028179105
-
RNA editing of tRNA(Phe) and tRNA(Cys) in mitochondria of Oenothera berteriana is initiated in precursor molecules
-
Binder S, Marchfelder A, Brennicke A. 1994. RNA editing of tRNA(Phe) and tRNA(Cys) in mitochondria of Oenothera berteriana is initiated in precursor molecules. Mol. Gen. Genet. 244:67-74
-
(1994)
Mol. Gen. Genet.
, vol.244
, pp. 67-74
-
-
Binder, S.1
Marchfelder, A.2
Brennicke, A.3
-
7
-
-
0029115746
-
RNA editing in wheat mitochondria proceeds by a deamination mechanism
-
Blanc V, Litvak S, Araya A. 1995. RNA editing in wheat mitochondria proceeds by a deamination mechanism. FEBS Lett. 373:56-60
-
(1995)
FEBS Lett.
, vol.373
, pp. 56-60
-
-
Blanc, V.1
Litvak, S.2
Araya, A.3
-
8
-
-
72149110399
-
Breaking the code of DNA-binding specificity of TAL-type III effectors
-
Boch J, Scholze H, Schornack S, Landgraf A, Hahn S, et al. 2009. Breaking the code of DNA-binding specificity of TAL-type III effectors. Science 326:1509-12
-
(2009)
Science
, vol.326
, pp. 1509-1512
-
-
Boch, J.1
Scholze, H.2
Schornack, S.3
Landgraf, A.4
Hahn, S.5
-
9
-
-
0029813034
-
In vivo dissection of cis-acting determinants for plastid RNA editing
-
Bock R, Hermann M, Kössel H. 1996. In vivo dissection of cis-acting determinants for plastid RNA editing. EMBO J. 15:5052-59
-
(1996)
EMBO J.
, vol.15
, pp. 5052-5059
-
-
Bock, R.1
Hermann, M.2
Kössel, H.3
-
10
-
-
0028024292
-
Introduction of a heterologous editing site into the tobacco plastid genome: The lack of RNA editing leads to a mutant phenotype
-
Bock R, Kössel H, Maliga P. 1994. Introduction of a heterologous editing site into the tobacco plastid genome: the lack of RNA editing leads to a mutant phenotype. EMBO J. 13:4623-28
-
(1994)
EMBO J.
, vol.13
, pp. 4623-4628
-
-
Bock, R.1
Kössel, H.2
Maliga, P.3
-
11
-
-
0030946854
-
Extraplastidic site-specific factors mediate RNA editing in chloroplasts
-
Bock R, Koop HU. 1997. Extraplastidic site-specific factors mediate RNA editing in chloroplasts. EMBO J. 16:3282-88
-
(1997)
EMBO J.
, vol.16
, pp. 3282-3288
-
-
Bock, R.1
Koop, H.U.2
-
12
-
-
0028899208
-
RNA editing of a group II intron in Oenothera as a prerequisite for splicing
-
Börner GV, Mörl M, Wissinger B, Brennicke A, Schmelzer C. 1995. RNA editing of a group II intron in Oenothera as a prerequisite for splicing. Mol. Gen. Genet. 246:739-44
-
(1995)
Mol. Gen. Genet.
, vol.246
, pp. 739-744
-
-
Börner, G.V.1
Mörl, M.2
Wissinger, B.3
Brennicke, A.4
Schmelzer, C.5
-
13
-
-
84868139176
-
Two interacting proteins are necessary for the editing of the NdhD-1 site in Arabidopsis plastids
-
Boussardon C, Salone V, Avon A, Berthomé R, Hammani K, et al. 2012. Two interacting proteins are necessary for the editing of the NdhD-1 site in Arabidopsis plastids. Plant Cell 24:3684-94
-
(2012)
Plant Cell
, vol.24
, pp. 3684-3694
-
-
Boussardon, C.1
Salone, V.2
Avon, A.3
Berthomé, R.4
Hammani, K.5
-
15
-
-
0029989864
-
Sequences directing C to U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site
-
Chaudhuri S, Maliga P. 1996. Sequences directing C to U editing of the plastid psbL mRNA are located within a 22 nucleotide segment spanning the editing site. EMBO J. 15:5958-64
-
(1996)
EMBO J.
, vol.15
, pp. 5958-5964
-
-
Chaudhuri, S.1
Maliga, P.2
-
16
-
-
0024419064
-
RNA editing in plant mitochondria
-
Covello PS, Gray MW. 1989. RNA editing in plant mitochondria. Nature 341:662-66
-
(1989)
Nature
, vol.341
, pp. 662-666
-
-
Covello, P.S.1
Gray, M.W.2
-
17
-
-
37449010358
-
The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 intron 1 in Arabidopsis thaliana
-
de Longevialle AF, Meyer EH, Andres C, Taylor NL, Lurin C, et al. 2007. The pentatricopeptide repeat gene OTP43 is required for trans-splicing of the mitochondrial nad1 intron 1 in Arabidopsis thaliana. Plant Cell 19:3256-65
-
(2007)
Plant Cell
, vol.19
, pp. 3256-3265
-
-
De Longevialle, A.F.1
Meyer, E.H.2
Andres, C.3
Taylor, N.L.4
Lurin, C.5
-
18
-
-
0033178676
-
A prokaryotic-type cytidine deaminase from Arabidopsis thaliana gene expression and functional characterization
-
Faivre-Nitschke SE, Grienenberger JM, Gualberto JM. 1999. A prokaryotic-type cytidine deaminase from Arabidopsis thaliana gene expression and functional characterization. Eur. J. Biochem. 263:896-903
-
(1999)
Eur. J. Biochem.
, vol.263
, pp. 896-903
-
-
Faivre-Nitschke, S.E.1
Grienenberger, J.M.2
Gualberto, J.M.3
-
19
-
-
0034802513
-
Cis recognition elements in plant mitochondrion RNA editing
-
Farré JC, Leon G, Jordana X, Araya A. 2001. Cis recognition elements in plant mitochondrion RNA editing. Mol. Cell. Biol. 21:6731-37
-
(2001)
Mol. Cell. Biol.
, vol.21
, pp. 6731-6737
-
-
Farré, J.C.1
Leon, G.2
Jordana, X.3
Araya, A.4
-
20
-
-
79952166885
-
Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution
-
Fujii S, Bond CS, Small I. 2010. Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution. Proc. Natl. Acad. Sci. USA 108:1723-28
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 1723-1728
-
-
Fujii, S.1
Bond, C.S.2
Small, I.3
-
21
-
-
79957886185
-
The evolution of RNA editing and pentatricopeptide repeat genes
-
Fujii S, Small I. 2011. The evolution of RNA editing and pentatricopeptide repeat genes. New Phytol. 191:37-47
-
(2011)
New Phytol.
, vol.191
, pp. 37-47
-
-
Fujii, S.1
Small, I.2
-
22
-
-
0033592907
-
RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs
-
Giegé P, Brennicke A. 1999. RNA editing in Arabidopsis mitochondria effects 441 C to U changes in ORFs. Proc. Natl. Acad. Sci. USA 96:15324-29
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 15324-15329
-
-
Giegé, P.1
Brennicke, A.2
-
24
-
-
69849093397
-
A trans-splicing group i intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii
-
Grewe F, Viehoever P, Weisshaar B, Knoop V. 2009. A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Res. 37:5093-104
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 5093-5104
-
-
Grewe, F.1
Viehoever, P.2
Weisshaar, B.3
Knoop, V.4
-
25
-
-
10344257212
-
Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants
-
Groth-Malonek M, Pruchner D, Grewe F, Knoop V. 2005. Ancestors of trans-splicing mitochondrial introns support serial sister group relationships of hornworts and mosses with vascular plants. Mol. Biol. Evol. 22:117-25
-
(2005)
Mol. Biol. Evol.
, vol.22
, pp. 117-125
-
-
Groth-Malonek, M.1
Pruchner, D.2
Grewe, F.3
Knoop, V.4
-
26
-
-
34047228910
-
Evolution of a pseudogene: Exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae
-
Groth-Malonek M, Wahrmund U, Polsakiewicz M, Knoop V. 2007. Evolution of a pseudogene: exclusive survival of a functional mitochondrial nad7 gene supports Haplomitrium as the earliest liverwort lineage and proposes a secondary loss of RNA editing in Marchantiidae. Mol. Biol. Evol. 24:1068-74
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 1068-1074
-
-
Groth-Malonek, M.1
Wahrmund, U.2
Polsakiewicz, M.3
Knoop, V.4
-
27
-
-
0024414676
-
RNA editing in wheat mitochondria results in the conservation of protein sequences
-
Gualberto JM, Lamattina L, Bonnard G, Weil JH, Grienenberger JM. 1989. RNA editing in wheat mitochondria results in the conservation of protein sequences. Nature 341:660-62
-
(1989)
Nature
, vol.341
, pp. 660-662
-
-
Gualberto, J.M.1
Lamattina, L.2
Bonnard, G.3
Weil, J.H.4
Grienenberger, J.M.5
-
28
-
-
84874304188
-
MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8
-
Härtel B, Zehrmann A, Verbitskiy D, van der Merwe JA, Brennicke A, Takenaka M. 2013. MEF10 is required for RNA editing at nad2-842 in mitochondria of Arabidopsis thaliana and interacts with MORF8. Plant Mol. Biol. 81:337-46
-
(2013)
Plant Mol. Biol.
, vol.81
, pp. 337-346
-
-
Härtel, B.1
Zehrmann, A.2
Verbitskiy, D.3
Van Der Merwe, J.A.4
Brennicke, A.5
Takenaka, M.6
-
29
-
-
73249140998
-
General features of chloroplast RNA editing factors and their target sites gained from a study of new Arabidopsis editing mutants
-
Hammani K, Okuda K, Tanz SK, Chateigner-Boutin AL, Shikanai T, Small I. 2009. General features of chloroplast RNA editing factors and their target sites gained from a study of new Arabidopsis editing mutants. Plant Cell 21:3686-89
-
(2009)
Plant Cell
, vol.21
, pp. 3686-3689
-
-
Hammani, K.1
Okuda, K.2
Tanz, S.K.3
Chateigner-Boutin, A.L.4
Shikanai, T.5
Small, I.6
-
30
-
-
34548589169
-
Assay of editing of exogenous RNAs in chloroplast extracts of Arabidopsis, maize, pea and tobacco
-
Hayes ML, Hanson MR. 2007. Assay of editing of exogenous RNAs in chloroplast extracts of Arabidopsis, maize, pea and tobacco. Methods Enzymol. 424:459-82
-
(2007)
Methods Enzymol.
, vol.424
, pp. 459-482
-
-
Hayes, M.L.1
Hanson, M.R.2
-
31
-
-
17044412539
-
Substrate and cofactor requirements for RNA editing of chloroplast transcripts in Arabidopsis in vitro
-
Hegeman CE, Hayes ML, Hanson MR. 2005. Substrate and cofactor requirements for RNA editing of chloroplast transcripts in Arabidopsis in vitro. Plant J. 42:124-32
-
(2005)
Plant J.
, vol.42
, pp. 124-132
-
-
Hegeman, C.E.1
Hayes, M.L.2
Hanson, M.R.3
-
33
-
-
0025910413
-
Editing of a chloroplast mRNA by creation of an initiation codon
-
Hoch B, Maier RM, Appel K, Igloi GL, Kössel H. 1991. Editing of a chloroplast mRNA by creation of an initiation codon. Nature 353:178-80
-
(1991)
Nature
, vol.353
, pp. 178-180
-
-
Hoch, B.1
Maier, R.M.2
Appel, K.3
Igloi, G.L.4
Kössel, H.5
-
34
-
-
56449121204
-
Did RNA editing in plant organellar genomes originate under natural selection or through genetic drift?
-
Jobson RW, Qiu YL. 2008. Did RNA editing in plant organellar genomes originate under natural selection or through genetic drift? Biol. Direct 3:43
-
(2008)
Biol. Direct
, vol.3
, pp. 43
-
-
Jobson, R.W.1
Qiu, Y.L.2
-
35
-
-
0032029993
-
Site-selective inhibition of plastid RNA editing by heat shock and antibiotics: A role for plastid translation in RNA editing
-
Karcher D, Bock R. 1998. Site-selective inhibition of plastid RNA editing by heat shock and antibiotics: a role for plastid translation in RNA editing. Nucleic Acids Res. 26:1185-90
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 1185-1190
-
-
Karcher, D.1
Bock, R.2
-
36
-
-
60949094475
-
Higher plant in organello systems as a model for RNA editing
-
Kempken F, Bolle N, Bruhs A. 2009. Higher plant in organello systems as a model for RNA editing. Endocytobiosis Cell Res. 19:1-10
-
(2009)
Endocytobiosis Cell Res.
, vol.19
, pp. 1-10
-
-
Kempken, F.1
Bolle, N.2
Bruhs, A.3
-
37
-
-
79951578730
-
When you can't trust the DNA: RNA editing changes transcript sequences
-
Knoop V. 2011. When you can't trust the DNA: RNA editing changes transcript sequences. Cell. Mol. Life Sci. 68:567-86
-
(2011)
Cell. Mol. Life Sci.
, vol.68
, pp. 567-586
-
-
Knoop, V.1
-
38
-
-
77957774121
-
DYW-type PPR proteins in a heterolobosean protist: Plant RNA editing factors involved in an ancient horizontal gene transfer?
-
Knoop V, Rüdinger M. 2010. DYW-type PPR proteins in a heterolobosean protist: plant RNA editing factors involved in an ancient horizontal gene transfer? FEBS Lett. 584:4287-91
-
(2010)
FEBS Lett.
, vol.584
, pp. 4287-4291
-
-
Knoop, V.1
Rüdinger, M.2
-
39
-
-
84859330674
-
Identification and characterization of the RNA binding surface of the pentatricopeptide repeat protein
-
Kobayashi K, Kawabata M, Hisano K, Kazama T, Matsuoka K, et al. 2012. Identification and characterization of the RNA binding surface of the pentatricopeptide repeat protein. Nucleic Acids Res. 40:2712-23
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 2712-2723
-
-
Kobayashi, K.1
Kawabata, M.2
Hisano, K.3
Kazama, T.4
Matsuoka, K.5
-
40
-
-
84867599386
-
Apolipoprotein B mRNA: Editing, catalytic polypeptide cytidine deaminases and retroviral restriction
-
Koito A, Ikeda T. 2012. Apolipoprotein B mRNA: editing, catalytic polypeptide cytidine deaminases and retroviral restriction. Wiley Interdiscip. Rev. RNA 3:529-41
-
(2012)
Wiley Interdiscip. Rev. RNA
, vol.3
, pp. 529-541
-
-
Koito, A.1
Ikeda, T.2
-
41
-
-
12744253474
-
A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts
-
Kotera E, Tasaka M, Shikanai T. 2005. A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts. Nature 433:326-30
-
(2005)
Nature
, vol.433
, pp. 326-330
-
-
Kotera, E.1
Tasaka, M.2
Shikanai, T.3
-
42
-
-
0037736768
-
RNA editing in hornwort chloroplasts makes more than half the genes functional
-
Kugita M, Yamamoto Y, Fujikawa T, Matsumoto T, Yoshinaga K. 2003. RNA editing in hornwort chloroplasts makes more than half the genes functional. Nucleic Acids Res. 31:2417-23
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 2417-2423
-
-
Kugita, M.1
Yamamoto, Y.2
Fujikawa, T.3
Matsumoto, T.4
Yoshinaga, K.5
-
43
-
-
0035169044
-
Low temperature affects the processing pattern and RNA editing status of the mitochondrial cox2 transcripts in wheat
-
Kurihara-Yonemoto S, Handa H. 2001. Low temperature affects the processing pattern and RNA editing status of the mitochondrial cox2 transcripts in wheat. Curr. Genet. 40:203-8
-
(2001)
Curr. Genet.
, vol.40
, pp. 203-208
-
-
Kurihara-Yonemoto, S.1
Handa, H.2
-
44
-
-
77956080636
-
ABA overly sensitive 5 (ABO5), encoding a pen-tatricopeptide repeat protein required for cis-splicing of mitochondrial nad2 intron 3, is involved in the abscisic acid response in Arabidopsis
-
Liu Y, He J, Chen Z, Ren X, Hong X, Gong Z. 2010. ABA overly sensitive 5 (ABO5), encoding a pen-tatricopeptide repeat protein required for cis-splicing of mitochondrial nad2 intron 3, is involved in the abscisic acid response in Arabidopsis. Plant J. 63:749-65
-
(2010)
Plant J.
, vol.63
, pp. 749-765
-
-
Liu, Y.1
He, J.2
Chen, Z.3
Ren, X.4
Hong, X.5
Gong, Z.6
-
45
-
-
0029867163
-
Protein polymorphism generated by differential RNA editing of a plant mitochondrial rps12 gene
-
Lu B, Wilson RK, Phreaner CG, Mulligan RM, Hanson MR. 1996. Protein polymorphism generated by differential RNA editing of a plant mitochondrial rps12 gene. Mol. Cell. Biol. 16:1543-49
-
(1996)
Mol. Cell. Biol.
, vol.16
, pp. 1543-1549
-
-
Lu, B.1
Wilson, R.K.2
Phreaner, C.G.3
Mulligan, R.M.4
Hanson, M.R.5
-
46
-
-
4043172772
-
Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis
-
Lurin C, Andres C, Aubourg S, Bellaoui M, Bitton F, et al. 2004. Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis. Plant Cell 16:2089-103
-
(2004)
Plant Cell
, vol.16
, pp. 2089-2103
-
-
Lurin, C.1
Andres, C.2
Aubourg, S.3
Bellaoui, M.4
Bitton, F.5
-
47
-
-
34548547317
-
Transformation of the plastid genome to study RNA editing
-
Lutz KA, Maliga P. 2007. Transformation of the plastid genome to study RNA editing. Methods Enzymol. 424:501-18
-
(2007)
Methods Enzymol.
, vol.424
, pp. 501-518
-
-
Lutz, K.A.1
Maliga, P.2
-
48
-
-
53149139334
-
Complex chloroplast RNA metabolism: Just debugging the genetic programme?
-
Maier UG, Bozarth A, Funk HT, Zauner S, Rensing SA, et al. 2008. Complex chloroplast RNA metabolism: just debugging the genetic programme? BMC Biol. 6:36
-
(2008)
BMC Biol.
, vol.6
, pp. 36
-
-
Maier, U.G.1
Bozarth, A.2
Funk, H.T.3
Zauner, S.4
Rensing, S.A.5
-
49
-
-
0027451911
-
Editing corrects mispairing in the acceptor stem of bean and potato mitochondrial phenylalanine transfer RNAs
-
Marechal-Drouard L, Ramamonjisoa D, Cosset A, Weil JH, Dietrich A. 1993. Editing corrects mispairing in the acceptor stem of bean and potato mitochondrial phenylalanine transfer RNAs. Nucleic Acids Res. 21:4909-14
-
(1993)
Nucleic Acids Res.
, vol.21
, pp. 4909-4914
-
-
Marechal-Drouard, L.1
Ramamonjisoa, D.2
Cosset, A.3
Weil, J.H.4
Dietrich, A.5
-
50
-
-
1242276583
-
Tissue-and stage-specific RNA editing of rps 14 transcripts in moss (Physcomitrella patens) chloroplasts
-
Miyata Y, Sugita M. 2004. Tissue-and stage-specific RNA editing of rps 14 transcripts in moss (Physcomitrella patens) chloroplasts. J. Plant Physiol. 161:113-15
-
(2004)
J. Plant Physiol.
, vol.161
, pp. 113-115
-
-
Miyata, Y.1
Sugita, M.2
-
51
-
-
67849095411
-
The PREP suite: Predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments
-
Mower JP. 2009. The PREP suite: predictive RNA editors for plant mitochondrial genes, chloroplast genes and user-defined alignments. Nucleic Acids Res. 37:253-59
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 253-259
-
-
Mower, J.P.1
-
52
-
-
0035169045
-
Heat stress results in incomplete C-to-U editing of maize chloroplast mRNAs and correlates with changes in chloroplast transcription rate
-
Nakajima Y, Mulligan RM. 2001. Heat stress results in incomplete C-to-U editing of maize chloroplast mRNAs and correlates with changes in chloroplast transcription rate. Curr. Genet. 40:209-13
-
(2001)
Curr. Genet.
, vol.40
, pp. 209-213
-
-
Nakajima, Y.1
Mulligan, R.M.2
-
53
-
-
84863957655
-
Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants
-
Nakamura T, Yagi Y, Kobayashi K. 2012. Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants. Plant Cell Physiol. 53:1171-79
-
(2012)
Plant Cell Physiol.
, vol.53
, pp. 1171-1179
-
-
Nakamura, T.1
Yagi, Y.2
Kobayashi, K.3
-
54
-
-
13144259628
-
Escherichia coli cytidine deaminase provides a molecular model for ApoB RNA editing and a mechanism for RNA substrate recognition
-
Navaratnam N, Fujino T, Bayliss J, Jarmuz A, How A, et al. 1998. Escherichia coli cytidine deaminase provides a molecular model for ApoB RNA editing and a mechanism for RNA substrate recognition. J. Mol. Biol. 275:695-714
-
(1998)
J. Mol. Biol.
, vol.275
, pp. 695-714
-
-
Navaratnam, N.1
Fujino, T.2
Bayliss, J.3
Jarmuz, A.4
How, A.5
-
55
-
-
25844481583
-
An in vitro RNA editing system from cauliflower mitochondria: Editing site recognition parameters can vary in different plant species
-
Neuwirt J, Takenaka M, van der Merwe JA, Brennicke A. 2005. An in vitro RNA editing system from cauliflower mitochondria: Editing site recognition parameters can vary in different plant species. RNA 11:1563-70
-
(2005)
RNA
, vol.11
, pp. 1563-1570
-
-
Neuwirt, J.1
Takenaka, M.2
Van Der Merwe, J.A.3
Brennicke, A.4
-
56
-
-
77952293063
-
Functions and regulation of RNA editing by ADAR deaminases
-
Nishikura K. 2010. Functions and regulation of RNA editing by ADAR deaminases. Annu. Rev. Biochem. 79:321-49
-
(2010)
Annu. Rev. Biochem.
, vol.79
, pp. 321-349
-
-
Nishikura, K.1
-
57
-
-
62549149035
-
Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts
-
Okuda K, Chateigner-Boutin A-L, Nakamura T, Delannoy E, Sugita M. 2009. Pentatricopeptide repeat proteins with the DYW motif have distinct molecular functions in RNA editing and RNA cleavage in Arabidopsis chloroplasts. Plant Cell 21:146-56
-
(2009)
Plant Cell
, vol.21
, pp. 146-156
-
-
Okuda, K.1
Chateigner-Boutin, A.-L.2
Nakamura, T.3
Delannoy, E.4
Sugita, M.5
-
58
-
-
34249938871
-
Conserved domain structure of penta-tricopeptide repeat proteins involved in chloroplast RNA editing
-
Okuda K, Myouga R, Motohashi K, Shinozaki K, Shikanai T. 2007. Conserved domain structure of penta-tricopeptide repeat proteins involved in chloroplast RNA editing. Proc. Natl. Acad. Sci. USA 104:8178-83
-
(2007)
Proc. Natl. Acad. Sci. USA
, vol.104
, pp. 8178-8183
-
-
Okuda, K.1
Myouga, R.2
Motohashi, K.3
Shinozaki, K.4
Shikanai, T.5
-
59
-
-
33845986746
-
A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing
-
Okuda K, Nakamura T, Sugita M, Shimizu T, Shikanai T. 2006. A pentatricopeptide repeat protein is a site recognition factor in chloroplast RNA editing. J. Biol. Chem. 281:37661-67
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 37661-37667
-
-
Okuda, K.1
Nakamura, T.2
Sugita, M.3
Shimizu, T.4
Shikanai, T.5
-
60
-
-
44649133995
-
On the expansion of the pentatricopeptide repeat gene family in plants
-
O'Toole N, Hattori M, Andres C, Iida K, Lurin C, et al. 2008. On the expansion of the pentatricopeptide repeat gene family in plants. Mol. Biol. Evol. 25:1120-28
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1120-1128
-
-
O'Toole, N.1
Hattori, M.2
Andres, C.3
Iida, K.4
Lurin, C.5
-
61
-
-
0030044848
-
Incomplete editing of rps12 transcripts results in the synthesis of polymorphic polypeptides in plant mitochondria
-
Phreaner CG, Williams MA, Mulligan RM. 1996. Incomplete editing of rps12 transcripts results in the synthesis of polymorphic polypeptides in plant mitochondria. Plant Cell 8:107-17
-
(1996)
Plant Cell
, vol.8
, pp. 107-117
-
-
Phreaner, C.G.1
Williams, M.A.2
Mulligan, R.M.3
-
62
-
-
79251597163
-
REDIdb: An upgraded bioinfor-matics resource for organellar RNA editing sites
-
Picardi E, Regina T, Verbitskiy D, Brennicke A, Quagliariello C. 2011. REDIdb: an upgraded bioinfor-matics resource for organellar RNA editing sites. Mitochondrion 11:360-65
-
(2011)
Mitochondrion
, vol.11
, pp. 360-365
-
-
Picardi, E.1
Regina, T.2
Verbitskiy, D.3
Brennicke, A.4
Quagliariello, C.5
-
63
-
-
0027131046
-
RNA editing in plant mitochondria: α-phosphate is retained during C-to-U conversion in mRNAs
-
Rajasekhar VK, Mulligan RM. 1993. RNA editing in plant mitochondria: α-phosphate is retained during C-to-U conversion in mRNAs. Plant Cell 5:1843-52
-
(1993)
Plant Cell
, vol.5
, pp. 1843-1852
-
-
Rajasekhar, V.K.1
Mulligan, R.M.2
-
64
-
-
69049120274
-
Distinct roles for sequences upstream of and downstream from Physarum editing sites
-
Rhee AC, Somerlot BH, Parimi N, Gott JM. 2009. Distinct roles for sequences upstream of and downstream from Physarum editing sites. RNA 15:1753-65
-
(2009)
RNA
, vol.15
, pp. 1753-1765
-
-
Rhee, A.C.1
Somerlot, B.H.2
Parimi, N.3
Gott, J.M.4
-
65
-
-
65349120245
-
RNA editing: Only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal
-
Rüdinger M, Funk HT, Rensing SA, Maier UG, Knoop V. 2009. RNA editing: only eleven sites are present in the Physcomitrella patens mitochondrial transcriptome and a universal nomenclature proposal. Mol. Genet. Genomics 281:473-81
-
(2009)
Mol. Genet. Genomics
, vol.281
, pp. 473-481
-
-
Rüdinger, M.1
Funk, H.T.2
Rensing, S.A.3
Maier, U.G.4
Knoop, V.5
-
66
-
-
45849098234
-
Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts
-
Rüdinger M, Polsakiewicz M, Knoop V. 2008. Organellar RNA editing and plant-specific extensions of pentatricopeptide repeat proteins in jungermanniid but not in marchantiid liverworts. Mol. Biol. Evol. 25:1405-14
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1405-1414
-
-
Rüdinger, M.1
Polsakiewicz, M.2
Knoop, V.3
-
67
-
-
34548133226
-
A hypothesis on the identification of the editing enzyme in plant organelles
-
Salone V, Rüdinger M, Polsakiewicz M, Hoffmann B, Groth-Malonek M, et al. 2007. A hypothesis on the identification of the editing enzyme in plant organelles. FEBS Lett. 581:4132-38
-
(2007)
FEBS Lett.
, vol.581
, pp. 4132-4138
-
-
Salone, V.1
Rüdinger, M.2
Polsakiewicz, M.3
Hoffmann, B.4
Groth-Malonek, M.5
-
68
-
-
32944475665
-
Pigment deficiency in nightshade/tobacco cybrids is caused by the failure to edit the plastid ATPase α-subunit mRNA
-
Schmitz-Linneweber C, Kushnir S, Babiychuk E, Poltnigg P, Herrmann RG, Maier RM. 2005. Pigment deficiency in nightshade/tobacco cybrids is caused by the failure to edit the plastid ATPase α-subunit mRNA. Plant Cell 17:1815-28
-
(2005)
Plant Cell
, vol.17
, pp. 1815-1828
-
-
Schmitz-Linneweber, C.1
Kushnir, S.2
Babiychuk, E.3
Poltnigg, P.4
Herrmann, R.G.5
Maier, R.M.6
-
69
-
-
56549095978
-
Pentatricopeptide repeat proteins: A socket set for organelle gene expression
-
Schmitz-Linneweber C, Small I. 2008. Pentatricopeptide repeat proteins: a socket set for organelle gene expression. Trends Plant Sci. 13:663-70
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 663-670
-
-
Schmitz-Linneweber, C.1
Small, I.2
-
70
-
-
33645074681
-
RNA editing in plant organelles: Machinery, physiological function and evolution
-
Shikanai T. 2006. RNA editing in plant organelles: machinery, physiological function and evolution. Cell. Mol. Life Sci. 63:689-708
-
(2006)
Cell. Mol. Life Sci.
, vol.63
, pp. 689-708
-
-
Shikanai, T.1
-
71
-
-
0033965922
-
The PPR motif: A TPR-related motif prevalent in plant organellar proteins
-
Small ID, Peeters N. 2000. The PPR motif: a TPR-related motif prevalent in plant organellar proteins. Trends Biochem. Sci. 25:46-47
-
(2000)
Trends Biochem. Sci.
, vol.25
, pp. 46-47
-
-
Small, I.D.1
Peeters, N.2
-
72
-
-
84859084955
-
PPR2263, a DYW-subgroup penta-tricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis and maize growth
-
Sosso S, Mbelo S, Vernoud V, Gendrot G, Dedieu A, et al. 2012. PPR2263, a DYW-subgroup penta-tricopeptide repeat protein, is required for mitochondrial nad5 and cob transcript editing, mitochondrion biogenesis and maize growth. Plant Cell 24:676-91
-
(2012)
Plant Cell
, vol.24
, pp. 676-691
-
-
Sosso, S.1
Mbelo, S.2
Vernoud, V.3
Gendrot, G.4
Dedieu, A.5
-
73
-
-
0032969238
-
Plant mitochondrial RNA editing
-
Steinhauser S, Beckert S, Capesius I, Malek O, Knoop V. 1999. Plant mitochondrial RNA editing. J. Mol. Evol. 48:303-12
-
(1999)
J. Mol. Evol.
, vol.48
, pp. 303-312
-
-
Steinhauser, S.1
Beckert, S.2
Capesius, I.3
Malek, O.4
Knoop, V.5
-
74
-
-
33749018798
-
Extensive RNA editing in transcripts from the PsbB operon and RpoA gene of plastids from the enigmatic moss Takakia lepidozioides
-
Sugita M, Miyata Y, Maruyama K, Sugiura C, Arikawa T, Higuchi M. 2006. Extensive RNA editing in transcripts from the PsbB operon and RpoA gene of plastids from the enigmatic moss Takakia lepidozioides. Biosci. Biotechnol. Biochem. 70:2268-74
-
(2006)
Biosci. Biotechnol. Biochem.
, vol.70
, pp. 2268-2274
-
-
Sugita, M.1
Miyata, Y.2
Maruyama, K.3
Sugiura, C.4
Arikawa, T.5
Higuchi, M.6
-
75
-
-
75949104310
-
MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis
-
Takenaka M. 2009. MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis. Plant Physiol. 152:939-47
-
(2009)
Plant Physiol.
, vol.152
, pp. 939-947
-
-
Takenaka, M.1
-
76
-
-
0346850864
-
In vitro RNA editing in pea mitochondria requires NTP or d NTP, suggesting involvement of an RNA helicase
-
Takenaka M, Brennicke A. 2003. In vitro RNA editing in pea mitochondria requires NTP or d NTP, suggesting involvement of an RNA helicase. J. Biol. Chem. 278:47526-33
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 47526-47533
-
-
Takenaka, M.1
Brennicke, A.2
-
77
-
-
84868090351
-
Using multiplex single base extension typing to screen for mutants defective in RNA editing
-
Takenaka M, Brennicke A. 2012. Using multiplex single base extension typing to screen for mutants defective in RNA editing. Nat. Protoc. 7:1931-45
-
(2012)
Nat. Protoc.
, vol.7
, pp. 1931-1945
-
-
Takenaka, M.1
Brennicke, A.2
-
78
-
-
37249023728
-
The process of RNA editing in plant mitochondria
-
Takenaka M, Verbitskiy D, van der Merwe JA, Zehrmann A, Brennicke A. 2008. The process of RNA editing in plant mitochondria. Mitochondrion 8:35-46
-
(2008)
Mitochondrion
, vol.8
, pp. 35-46
-
-
Takenaka, M.1
Verbitskiy, D.2
Van Der Merwe, J.A.3
Zehrmann, A.4
Brennicke, A.5
-
79
-
-
77956252019
-
Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana
-
Takenaka M, Verbitskiy D, Zehrmann A, Brennicke A. 2010. Reverse genetic screening identifies five E-class PPR proteins involved in RNA editing in mitochondria of Arabidopsis thaliana. J. Biol. Chem. 285:27122-29
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 27122-27129
-
-
Takenaka, M.1
Verbitskiy, D.2
Zehrmann, A.3
Brennicke, A.4
-
80
-
-
84878784240
-
Improved computational target site prediction for pentatricopeptide repeat RNA editing factors
-
Takenaka M, Zehrmann A, Brennicke A, Graichen K. 2013. Improved computational target site prediction for pentatricopeptide repeat RNA editing factors. PLoS ONE 8(6):e65343
-
(2013)
PLoS ONE
, vol.8
, Issue.6
-
-
Takenaka, M.1
Zehrmann, A.2
Brennicke, A.3
Graichen, K.4
-
81
-
-
84859475178
-
MORF family proteins are required for RNA editing in mitochondria and plastids of plants
-
Takenaka M, Zehrmann A, Härtel B, Kugelmann M, Verbitskiy D, Brennicke A. 2012. MORF family proteins are required for RNA editing in mitochondria and plastids of plants. Proc. Natl. Acad. Sci. USA 109:5104-9
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 5104-5109
-
-
Takenaka, M.1
Zehrmann, A.2
Härtel, B.3
Kugelmann, M.4
Verbitskiy, D.5
Brennicke, A.6
-
82
-
-
32944459327
-
Editing of plastid RNA in Arabidopsis thaliana ecotypes
-
Tillich M, Funk HT, Schmitz-Linneweber C, Poltnigg P, Sabater B, et al. 2005. Editing of plastid RNA in Arabidopsis thaliana ecotypes. Plant J. 43:708-15
-
(2005)
Plant J.
, vol.43
, pp. 708-715
-
-
Tillich, M.1
Funk, H.T.2
Schmitz-Linneweber, C.3
Poltnigg, P.4
Sabater, B.5
-
84
-
-
33745820870
-
Partially edited RNAs are intermediates of RNA editing in plant mitochondria
-
Verbitskiy D, Takenaka M, Neuwirt J, van der Merwe JA, Brennicke A. 2006. Partially edited RNAs are intermediates of RNA editing in plant mitochondria. Plant J. 47:408-16
-
(2006)
Plant J.
, vol.47
, pp. 408-416
-
-
Verbitskiy, D.1
Takenaka, M.2
Neuwirt, J.3
Van Der Merwe, J.A.4
Brennicke, A.5
-
85
-
-
54049138064
-
Multiple specificity recognition motifs enhance plant mitochondrial RNA editing in vitro
-
Verbitskiy D, van der Merwe JA, Zehrmann A, Brennicke A, Takenaka M. 2008. Multiple specificity recognition motifs enhance plant mitochondrial RNA editing in vitro. J. Biol. Chem. 283:24374-81
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 24374-24381
-
-
Verbitskiy, D.1
Van Der Merwe, J.A.2
Zehrmann, A.3
Brennicke, A.4
Takenaka, M.5
-
86
-
-
79951573316
-
The DYW-E-PPR protein MEF14 is required for RNA editing at site matR-1895 in mitochondria of Arabidopsis thaliana
-
Verbitskiy D, Zehrmann A, Härtel B, Brennicke A, Takenaka M. 2011. The DYW-E-PPR protein MEF14 is required for RNA editing at site matR-1895 in mitochondria of Arabidopsis thaliana. FEBS Lett. 585:700-4
-
(2011)
FEBS Lett.
, vol.585
, pp. 700-704
-
-
Verbitskiy, D.1
Zehrmann, A.2
Härtel, B.3
Brennicke, A.4
Takenaka, M.5
-
87
-
-
84868323065
-
Two related RNA editing proteins target the same sites in mitochondria of Arabidopsis thaliana
-
Verbitskiy D, Zehrmann A, Härtel B, Brennicke A, Takenaka M. 2012. Two related RNA editing proteins target the same sites in mitochondria of Arabidopsis thaliana. J. Biol. Chem. 287:38064-72
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 38064-38072
-
-
Verbitskiy, D.1
Zehrmann, A.2
Härtel, B.3
Brennicke, A.4
Takenaka, M.5
-
88
-
-
84857730206
-
Site-selective versus promiscuous A-to-I editing
-
Wahlstedt H, Ohman M. 2011. Site-selective versus promiscuous A-to-I editing. Wiley Interdiscip. Rev. RNA 2:761-71
-
(2011)
Wiley Interdiscip. Rev. RNA
, vol.2
, pp. 761-771
-
-
Wahlstedt, H.1
Ohman, M.2
-
89
-
-
73149111944
-
The phylogeny of mosses: Addressing open issues with a new mitochondrial locus: Group i intron cobi420
-
Wahrmund U, Quandt D, Knoop V. 2010. The phylogeny of mosses: addressing open issues with a new mitochondrial locus: group I intron cobi420. Mol. Phylogenet. Evol. 54:417-26
-
(2010)
Mol. Phylogenet. Evol.
, vol.54
, pp. 417-426
-
-
Wahrmund, U.1
Quandt, D.2
Knoop, V.3
-
90
-
-
50649095496
-
Sequence-specific binding of a chloroplast pentatri-copeptide repeat protein to its native group II intron ligand
-
Williams-Carrier R, Kroeger T, Barkan A. 2008. Sequence-specific binding of a chloroplast pentatri-copeptide repeat protein to its native group II intron ligand. RNA 14:1930-41
-
(2008)
RNA
, vol.14
, pp. 1930-1941
-
-
Williams-Carrier, R.1
Kroeger, T.2
Barkan, A.3
-
91
-
-
4444363004
-
High levels of RNA editing in a vascular plant chloroplast genome: Analysis of transcripts from the fern Adiantum capillus-veneris
-
Wolf PG, Rowe CA, Hasebe M. 2004. High levels of RNA editing in a vascular plant chloroplast genome: analysis of transcripts from the fern Adiantum capillus-veneris. Gene 339:89-97
-
(2004)
Gene
, vol.339
, pp. 89-97
-
-
Wolf, P.G.1
Rowe, C.A.2
Hasebe, M.3
-
92
-
-
52749098506
-
Seven large variations in the extent of RNA editing in plant mitochondria between three ecotypes of Arabidopsis thaliana
-
Zehrmann A, van der Merwe JA, Verbitskiy D, Brennicke A, Takenaka M. 2008. Seven large variations in the extent of RNA editing in plant mitochondria between three ecotypes of Arabidopsis thaliana. Mitochondrion 8:319-27
-
(2008)
Mitochondrion
, vol.8
, pp. 319-327
-
-
Zehrmann, A.1
Van Der Merwe, J.A.2
Verbitskiy, D.3
Brennicke, A.4
Takenaka, M.5
-
93
-
-
64749105292
-
A DYW domain containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana
-
Zehrmann A, van der Merwe JA, Verbitskiy D, Brennicke A, Takenaka M. 2009. A DYW domain containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana. Plant Cell 21:558-67
-
(2009)
Plant Cell
, vol.21
, pp. 558-567
-
-
Zehrmann, A.1
Van Der Merwe, J.A.2
Verbitskiy, D.3
Brennicke, A.4
Takenaka, M.5
-
94
-
-
84865485271
-
SLO2, a mitochondrial PPR protein affecting several RNA editing sites, is required for energy metabolism
-
Zhu Q, Dugardeyn J, Zhang C, Takenaka M, Kühn K, et al. 2012. SLO2, a mitochondrial PPR protein affecting several RNA editing sites, is required for energy metabolism. Plant J. 71:836-49
-
(2012)
Plant J.
, vol.71
, pp. 836-849
-
-
Zhu, Q.1
Dugardeyn, J.2
Zhang, C.3
Takenaka, M.4
Kühn, K.5
|