메뉴 건너뛰기




Volumn 136, Issue 3, 2004, Pages 3486-3503

Sequence and comparative analysis of the maize NB mitochondrial genome

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACIDS; DNA; GENES; PLANTS (BOTANY); PROTEINS; RNA;

EID: 11144234440     PISSN: 00320889     EISSN: None     Source Type: Journal    
DOI: 10.1104/pp.104.044602     Document Type: Article
Times cited : (264)

References (63)
  • 1
    • 0034917612 scopus 로고    scopus 로고
    • Multiple losses and transfers to the nucleus of two mitochondrial succinate dehydrogenase genes during angiosperm evolution
    • Adams KL, Rosenbleuth M, Qiu YL, Palmer JD (2001) Multiple losses and transfers to the nucleus of two mitochondrial succinate dehydrogenase genes during angiosperm evolution. Genetics 158: 1289-1300
    • (2001) Genetics , vol.158 , pp. 1289-1300
    • Adams, K.L.1    Rosenbleuth, M.2    Qiu, Y.L.3    Palmer, J.D.4
  • 3
    • 0030668042 scopus 로고    scopus 로고
    • The mystery of the rings: Structure and replication of mitochondrial genomes from higher plants
    • Backert S, Nielsen BL, Börner T (1997) The mystery of the rings: structure and replication of mitochondrial genomes from higher plants. Trends Plant Sci 2: 477-484
    • (1997) Trends Plant Sci , vol.2 , pp. 477-484
    • Backert, S.1    Nielsen, B.L.2    Börner, T.3
  • 5
    • 0027490348 scopus 로고
    • Reaching for the ring: The study of mitochondrial genome structure
    • Bendich AJ (1993) Reaching for the ring: the study of mitochondrial genome structure. Curr Genet 24: 279-290
    • (1993) Curr Genet , vol.24 , pp. 279-290
    • Bendich, A.J.1
  • 6
    • 0032541133 scopus 로고    scopus 로고
    • An essential component of a novel bacterial protein export system with homologues in plastids and mitochondria
    • Bogsch EG, Sargent F, Stanley NR, Berks BC, Robinson C, Palmer T (1998) An essential component of a novel bacterial protein export system with homologues in plastids and mitochondria. J Biol Chem 273: 18003-18006
    • (1998) J Biol Chem , vol.273 , pp. 18003-18006
    • Bogsch, E.G.1    Sargent, F.2    Stanley, N.R.3    Berks, B.C.4    Robinson, C.5    Palmer, T.6
  • 7
    • 0028833917 scopus 로고
    • A gene proposed to encode a transmembrane domain of an ABC transporter is expressed in wheat mitochondria
    • Bonnard G, Grienenberger JM (1995) A gene proposed to encode a transmembrane domain of an ABC transporter is expressed in wheat mitochondria. Mol Gen Genet 246: 91-99
    • (1995) Mol Gen Genet , vol.246 , pp. 91-99
    • Bonnard, G.1    Grienenberger, J.M.2
  • 8
    • 0033044938 scopus 로고    scopus 로고
    • Transcription signals of mitochondrial and nuclear genes for mitochondrial proteins in dicot plants
    • Brennicke A, Zabaleta E, Dombrowski S, Hoffmann M, Binder S (1999) Transcription signals of mitochondrial and nuclear genes for mitochondrial proteins in dicot plants. J Hered 90: 345-350
    • (1999) J Hered , vol.90 , pp. 345-350
    • Brennicke, A.1    Zabaleta, E.2    Dombrowski, S.3    Hoffmann, M.4    Binder, S.5
  • 9
    • 0344861878 scopus 로고    scopus 로고
    • Mitochondrial genomes: Anything goes
    • Burger G, Gray MW, Lang BF (2003) Mitochondrial genomes: anything goes. Trends Genet 19: 709-716
    • (2003) Trends Genet , vol.19 , pp. 709-716
    • Burger, G.1    Gray, M.W.2    Lang, B.F.3
  • 10
    • 0038000616 scopus 로고    scopus 로고
    • Phylogenetic analysis reveals five independent transfers of the chloroplast gene rbcL to the mitochondrial genome in angiosperms
    • Cummings MP, Nugent JM, Olmstead RG, Palmer JD (2003) Phylogenetic analysis reveals five independent transfers of the chloroplast gene rbcL to the mitochondrial genome in angiosperms. Curr Genet 43: 131-138
    • (2003) Curr Genet , vol.43 , pp. 131-138
    • Cummings, M.P.1    Nugent, J.M.2    Olmstead, R.G.3    Palmer, J.D.4
  • 11
    • 0040635946 scopus 로고    scopus 로고
    • Editing and import: Strategies for providing plant mitochondria with a complete set of functional transfer RNAs
    • Dietrich A, Small I, Cosset A, Weil JH, Maréchal-Drouard L (1996) Editing and import: strategies for providing plant mitochondria with a complete set of functional transfer RNAs. Biochimie 78: 518-529
    • (1996) Biochimie , vol.78 , pp. 518-529
    • Dietrich, A.1    Small, I.2    Cosset, A.3    Weil, J.H.4    Maréchal-Drouard, L.5
  • 12
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res 8: 186-194
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 13
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8: 175-185
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 14
    • 0029062411 scopus 로고
    • The maize mitochondrial genome: Dynamic, yet functional
    • Fauron C, Casper M, Gao Y, Moore B (1995) The maize mitochondrial genome: dynamic, yet functional. Trends Genet 11: 228-235
    • (1995) Trends Genet , vol.11 , pp. 228-235
    • Fauron, C.1    Casper, M.2    Gao, Y.3    Moore, B.4
  • 15
    • 0028239021 scopus 로고
    • A second type of normal maize mitochondrial genome: An evolutionary link
    • Fauron CM, Casper M (1994) A second type of normal maize mitochondrial genome: an evolutionary link. Genetics 137: 875-882
    • (1994) Genetics , vol.137 , pp. 875-882
    • Fauron, C.M.1    Casper, M.2
  • 16
    • 0346340245 scopus 로고
    • Maize mitochondrial DNA rearrangements between the normal type, the Texas male sterile cytoplasm, and a fertile revertant CMS-T regenerated plant
    • Fauron CM-R, Abbott AG, Brettell RIS, Gesteland RF (1987) Maize mitochondrial DNA rearrangements between the normal type, the Texas male sterile cytoplasm, and a fertile revertant CMS-T regenerated plant. Curr Genet 11: 339-346
    • (1987) Curr Genet , vol.11 , pp. 339-346
    • Fauron, C.M.-R.1    Abbott, A.G.2    Brettell, R.I.S.3    Gesteland, R.F.4
  • 17
    • 0024284665 scopus 로고
    • The BamHI/XhoI, SmaI restriction maps of the normal maize mitochondrial genotype B37
    • Fauron CM-R, Havlik M (1988) The BamHI/XhoI, SmaI restriction maps of the normal maize mitochondrial genotype B37. Nucleic Acids Res 16: 10395
    • (1988) Nucleic Acids Res , vol.16 , pp. 10395
    • Fauron, C.M.-R.1    Havlik, M.2
  • 18
    • 0035106822 scopus 로고    scopus 로고
    • Grasses as a single genetic system: Reassessment 2001
    • Freeling M (2001) Grasses as a single genetic system: reassessment 2001. Plant Physiol 125: 1191-1197
    • (2001) Plant Physiol , vol.125 , pp. 1191-1197
    • Freeling, M.1
  • 19
    • 0036213939 scopus 로고    scopus 로고
    • Evolutionary dynamics of grass genomes
    • Gaut BS (2002) Evolutionary dynamics of grass genomes. New Phytol 154: 15-28
    • (2002) New Phytol , vol.154 , pp. 15-28
    • Gaut, B.S.1
  • 20
    • 0031955116 scopus 로고    scopus 로고
    • Consed: A graphical tool for sequence finishing
    • Gordon D, Abajian C, Green P (1998) Consed: a graphical tool for sequence finishing. Genome Res 8: 195-202
    • (1998) Genome Res , vol.8 , pp. 195-202
    • Gordon, D.1    Abajian, C.2    Green, P.3
  • 21
    • 0344442430 scopus 로고    scopus 로고
    • The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): Comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana
    • Handa H (2003) The complete nucleotide sequence and RNA editing content of the mitochondrial genome of rapeseed (Brassica napus L.): comparative analysis of the mitochondrial genomes of rapeseed and Arabidopsis thaliana. Nucleic Acids Res 31: 5907-5916
    • (2003) Nucleic Acids Res , vol.31 , pp. 5907-5916
    • Handa, H.1
  • 23
    • 0001692896 scopus 로고    scopus 로고
    • Molecular systematics of the Brassicaceae: Evidence from coding plastidic matK and nuclear Chs sequences
    • Koch M, Haubold B, Mitchell-Olds T (2001) Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences. Am J Bot 88: 534-544
    • (2001) Am J Bot , vol.88 , pp. 534-544
    • Koch, M.1    Haubold, B.2    Mitchell-Olds, T.3
  • 24
    • 0034235831 scopus 로고    scopus 로고
    • The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA)
    • Kubo T, Nishizawa S, Sugawara A, Itchoda N, Estiati A, Mikami T (2000) The complete nucleotide sequence of the mitochondrial genome of sugar beet (Beta vulgaris L.) reveals a novel gene for tRNA(Cys)(GCA). Nucleic Acids Res 28: 2571-2576
    • (2000) Nucleic Acids Res , vol.28 , pp. 2571-2576
    • Kubo, T.1    Nishizawa, S.2    Sugawara, A.3    Itchoda, N.4    Estiati, A.5    Mikami, T.6
  • 25
    • 0029853167 scopus 로고    scopus 로고
    • Striking differences in mitochondrial tRNA import between different plant species
    • Kumar R, Marechal-Drouard L, Akama K, Small I (1996) Striking differences in mitochondrial tRNA import between different plant species. Mol Gen Genet 252: 404-411
    • (1996) Mol Gen Genet , vol.252 , pp. 404-411
    • Kumar, R.1    Marechal-Drouard, L.2    Akama, K.3    Small, I.4
  • 28
    • 0024967902 scopus 로고
    • Molecular analysis of the linear 2.3 kb plasmid of maize mitochondria: Apparent capture of tRNA genes
    • Leon P, Walbot V, Bedinger P (1989) Molecular analysis of the linear 2.3 kb plasmid of maize mitochondria: apparent capture of tRNA genes. Nucleic Acids Res 17: 4089-4099
    • (1989) Nucleic Acids Res , vol.17 , pp. 4089-4099
    • Leon, P.1    Walbot, V.2    Bedinger, P.3
  • 29
    • 0034815350 scopus 로고    scopus 로고
    • Small, repetitive DNAs contribute significantly to the expanded mitochondrial genome of cucumber
    • Lilly JW, Havey MJ (2001) Small, repetitive DNAs contribute significantly to the expanded mitochondrial genome of cucumber. Genetics 159: 317-328
    • (2001) Genetics , vol.159 , pp. 317-328
    • Lilly, J.W.1    Havey, M.J.2
  • 30
    • 0021768590 scopus 로고
    • The physical map and organisation of the mitochondrial genome from the fertile cytoplasm of maize
    • Lonsdale DM, Hodge TP, Fauron CM (1984) The physical map and organisation of the mitochondrial genome from the fertile cytoplasm of maize. Nucleic Acids Res 12: 9249-9261
    • (1984) Nucleic Acids Res , vol.12 , pp. 9249-9261
    • Lonsdale, D.M.1    Hodge, T.P.2    Fauron, C.M.3
  • 31
    • 0020842563 scopus 로고
    • Maize mitochondrial DNA contains a sequence homologous to the ribulose-1,5-bisphosphate carboxylase large subunit gene of chloroplast DNA
    • Lonsdale DM, Hodge TP, Howe CJ, Stern DB (1983) Maize mitochondrial DNA contains a sequence homologous to the ribulose-1,5-bisphosphate carboxylase large subunit gene of chloroplast DNA. Cell 34: 1007-1014
    • (1983) Cell , vol.34 , pp. 1007-1014
    • Lonsdale, D.M.1    Hodge, T.P.2    Howe, C.J.3    Stern, D.B.4
  • 32
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR (1997) tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25: 955-964
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 33
    • 0029160870 scopus 로고
    • Complete sequence of the maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
    • Maier RM, Neckermann K, Igloi GL, Kössel H (1995) Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J Mol Biol 251: 614-628
    • (1995) J Mol Biol , vol.251 , pp. 614-628
    • Maier, R.M.1    Neckermann, K.2    Igloi, G.L.3    Kössel, H.4
  • 35
    • 0032740766 scopus 로고    scopus 로고
    • The mitochondrial genome of Arabidopsis is composed of both native and immigrant information
    • Marienfeld JR, Unseld M, Brennicke A (1999) The mitochondrial genome of Arabidopsis is composed of both native and immigrant information. Trends Plant Sci 4: 495-502
    • (1999) Trends Plant Sci , vol.4 , pp. 495-502
    • Marienfeld, J.R.1    Unseld, M.2    Brennicke, A.3
  • 36
    • 0042307520 scopus 로고    scopus 로고
    • Gene transfer from organelles to the nucleus: Frequent and in big chunks
    • Martin W (2003) Gene transfer from organelles to the nucleus: frequent and in big chunks. Proc Natl Acad Sci USA 100: 8612-8614
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 8612-8614
    • Martin, W.1
  • 39
    • 0036456491 scopus 로고    scopus 로고
    • The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: Frequent DNA sequence acquisition and loss during the evolution of flowering plants
    • Notsu Y, Masood S, Nishikawa T, Kubo N, Akiduki G, Nakazono M, Hirai A, Kadowaki K (2002) The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants. Mol Genet Genomics 268: 434-445
    • (2002) Mol Genet Genomics , vol.268 , pp. 434-445
    • Notsu, Y.1    Masood, S.2    Nishikawa, T.3    Kubo, N.4    Akiduki, G.5    Nakazono, M.6    Hirai, A.7    Kadowaki, K.8
  • 40
    • 0026558482 scopus 로고
    • Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome
    • Oda K, Yamato K, Ohta E, Nakamura Y, Takemura M, Nozato N, Akashi K, Kanegae T, Ogura Y, Kohchi T, et al (1992) Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome. J Mol Biol 223: 1-7
    • (1992) J Mol Biol , vol.223 , pp. 1-7
    • Oda, K.1    Yamato, K.2    Ohta, E.3    Nakamura, Y.4    Takemura, M.5    Nozato, N.6    Akashi, K.7    Kanegae, T.8    Ogura, Y.9    Kohchi, T.10
  • 41
    • 0025249858 scopus 로고
    • Contrasting modes and tempos of genome evolution in land plant organelles
    • Palmer JD (1990) Contrasting modes and tempos of genome evolution in land plant organelles. Trends Genet 6: 115-120
    • (1990) Trends Genet , vol.6 , pp. 115-120
    • Palmer, J.D.1
  • 42
    • 0034691074 scopus 로고    scopus 로고
    • Dynamic evolution of plant mitochondrial genomes: Mobile genes and introns and highly variable mutation rates
    • Palmer JD, Adams KL, Cho Y, Parkinson CL, Qiu YL, Song K (2000) Dynamic evolution of plant mitochondrial genomes: mobile genes and introns and highly variable mutation rates. Proc Natl Acad Sci USA 97: 6960-6966
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 6960-6966
    • Palmer, J.D.1    Adams, K.L.2    Cho, Y.3    Parkinson, C.L.4    Qiu, Y.L.5    Song, K.6
  • 43
    • 0029592804 scopus 로고
    • Miropeats: Graphical DNA sequence comparisons
    • Parsons JD (1995) Miropeats: graphical DNA sequence comparisons. Comput Appl Biosci 11: 615-619
    • (1995) Comput Appl Biosci , vol.11 , pp. 615-619
    • Parsons, J.D.1
  • 44
    • 0036792417 scopus 로고    scopus 로고
    • Plant mitochondrial rps2 genes code for proteins with a C-terminal extension that is processed
    • Perrotta G, Grienenberger JM, Gualberto JM (2002) Plant mitochondrial rps2 genes code for proteins with a C-terminal extension that is processed. Plant Mol Biol 50: 523-533
    • (2002) Plant Mol Biol , vol.50 , pp. 523-533
    • Perrotta, G.1    Grienenberger, J.M.2    Gualberto, J.M.3
  • 45
    • 2442637641 scopus 로고    scopus 로고
    • NUMTs in sequenced eukaryotic genomes
    • Richly E, Leister D (2004) NUMTs in sequenced eukaryotic genomes. Mol Biol Evol 21: 1081-1084
    • (2004) Mol Biol Evol , vol.21 , pp. 1081-1084
    • Richly, E.1    Leister, D.2
  • 47
    • 0025114874 scopus 로고
    • Localization and organization of tRNA genes on the mitochondrial genomes of fertile and male sterile lines of maize
    • Sangaré A, Weil JH, Grienenberger JM, Fauron C, Lonsdale D (1990) Localization and organization of tRNA genes on the mitochondrial genomes of fertile and male sterile lines of maize. Mol Gen Genet 223: 224-232
    • (1990) Mol Gen Genet , vol.223 , pp. 224-232
    • Sangaré, A.1    Weil, J.H.2    Grienenberger, J.M.3    Fauron, C.4    Lonsdale, D.5
  • 51
    • 0033035387 scopus 로고    scopus 로고
    • Analysis of rice mitochondrial genome organization using pulsed-field gel electrophoresis
    • Senthilkumar P, Narayanan KK (1999) Analysis of rice mitochondrial genome organization using pulsed-field gel electrophoresis. J Biosci 24: 215-222
    • (1999) J Biosci , vol.24 , pp. 215-222
    • Senthilkumar, P.1    Narayanan, K.K.2
  • 52
    • 0030158571 scopus 로고    scopus 로고
    • The Staden sequence analysis package
    • Staden R (1996) The Staden sequence analysis package. Mol Biotechnol 5: 233-241
    • (1996) Mol Biotechnol , vol.5 , pp. 233-241
    • Staden, R.1
  • 53
    • 0019984101 scopus 로고
    • Mitochondrial and chloroplast genomes of maize have a 12-kilobase DNA sequence in common
    • Stern DB, Lonsdale DM (1982) Mitochondrial and chloroplast genomes of maize have a 12-kilobase DNA sequence in common. Nature 299: 698-702
    • (1982) Nature , vol.299 , pp. 698-702
    • Stern, D.B.1    Lonsdale, D.M.2
  • 56
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 57
    • 0035852717 scopus 로고    scopus 로고
    • Eight novel families of miniature inverted repeat transposable elements in the African malaria mosquito, Anopheles gambine
    • Tu Z (2001) Eight novel families of miniature inverted repeat transposable elements in the African malaria mosquito, Anopheles gambine. Proc Natl Acad Sci USA 98: 1699-1704
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 1699-1704
    • Tu, Z.1
  • 58
    • 0031021278 scopus 로고    scopus 로고
    • The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides
    • Unseld M, Marienfeld JR, Brandt P, Brennicke A (1997) The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides. Nat Genet 15: 57-61
    • (1997) Nat Genet , vol.15 , pp. 57-61
    • Unseld, M.1    Marienfeld, J.R.2    Brandt, P.3    Brennicke, A.4
  • 59
    • 0025064306 scopus 로고
    • A sequence encoding a maturase-related protein in a group II intron of a plant mitochondrial nad1 gene
    • Wahleithner JA, MacFarlane JL, Wolstenholme DR (1990) A sequence encoding a maturase-related protein in a group II intron of a plant mitochondrial nad1 gene. Proc Natl Acad Sci USA 87: 548-552
    • (1990) Proc Natl Acad Sci USA , vol.87 , pp. 548-552
    • Wahleithner, J.A.1    MacFarlane, J.L.2    Wolstenholme, D.R.3
  • 60
    • 0025182710 scopus 로고
    • A potato mitochondrial isoleucine tRNA is coded for by a mitochondrial gene possessing a methionine anticodon
    • Weber F, Dietrich A, Weil JH, Maréchal-Drouard L (1990) A potato mitochondrial isoleucine tRNA is coded for by a mitochondrial gene possessing a methionine anticodon. Nucleic Acids Res 18: 5027-5030
    • (1990) Nucleic Acids Res , vol.18 , pp. 5027-5030
    • Weber, F.1    Dietrich, A.2    Weil, J.H.3    Maréchal-Drouard, L.4
  • 62
    • 0031788826 scopus 로고    scopus 로고
    • Automated sequence preprocessing in a large-scale sequencing environment
    • Wendl MC, Dear S, Hodgson D, Hillier L (1998) Automated sequence preprocessing in a large-scale sequencing environment. Genome Res 8: 975-984
    • (1998) Genome Res , vol.8 , pp. 975-984
    • Wendl, M.C.1    Dear, S.2    Hodgson, D.3    Hillier, L.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.