The PPR-DYW proteins are required for RNA editing of rps14, cox1 and nad5 transcripts in Physcomitrella patens mitochondria

FEBS Letters

Volumn 585, Issue 14, 2011, Pages 2367-2371

  Uchida, Masato ^a   Ohtani, Shotaro ^a   Ichinose, Mizuho ^a   Sugita, Chieko ^a   Sugita, Mamoru ^a  

^a NAGOYA UNIVERSITY   (Japan)

Author keywords

DYW domain; Mitochondrion; Physcomitrella patens; PPR protein; RNA editing

Indexed keywords

PLANT RNA; PROTEIN PPR 78; PROTEIN PPR 79; TRANS ACTING FACTOR; UNCLASSIFIED DRUG; VEGETABLE PROTEIN;

ARTICLE; CONTROLLED STUDY; COX1 GENE; GENE DISRUPTION; GENE TARGETING; HOMOLOGOUS RECOMBINATION; MITOCHONDRION; NAD5 GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYSCOMITRELLA; PHYSCOMITRELLA PATENS; PLANT GENE; PRIORITY JOURNAL; PROTEIN RNA BINDING; RNA EDITING; RNA TRANSCRIPTION; RPS14 GENE;

BRYOPSIDA; CYCLOOXYGENASE 1; GENE EXPRESSION REGULATION, PLANT; MITOCHONDRIA; MITOCHONDRIAL PROTEINS; PLANT PROTEINS; RECOMBINANT FUSION PROTEINS; RIBOSOMAL PROTEINS; RNA EDITING; RNA, PLANT; TRANS-ACTIVATORS;

BRYOPHYTA; PHYSCOMITRELLA PATENS;

EID: 79960382904     PISSN: 00145793     EISSN: 18733468     Source Type: Journal    
DOI: 10.1016/j.febslet.2011.06.009     Document Type: Article

References (28)

1. T. Shikanai RNA editing in plant organelles: machinery, physiological function and evolution Cell. Mol. Life Sci. 63 2006 698 708
2. M. Takenaka, D. Verbitskiy, J.A. van der Merwe, A. Zehrmann, and A. Brennicke The process of RNA editing in plant mitochondria Mitochondrion 8 2008 35 46 (Pubitemid 350263734)
3. V. Knoop When you can't trust the DNA: RNA editing changes transcript sequences Cell. Mol. Life Sci. 68 2011 567 586
4. S. Bentolila, L.E. Elliott, and M.R. Hanson Genetic architecture of mitochondrial editing in Arabidopsis thaliana Genetics 178 2008 1693 1708
5. A.-L. Chateigner-Boutin, and I. Small A rapid high-throughput method for the detection and quantification of RNA editing based on high-resolution melting of amplicons Nucleic Acids Res. 35 2007 e114
6. E. Kotera, M. Tasaka, and T. Shikanai A pentatricopeptide repeat protein is essential for RNA editing in chloroplasts Nature 433 2005 326 330
7. K. Okuda, F. Myouga, R. Motohashi, K. Shinozaki, and T. Shikanai Conserved domain structure of pentatricopeptide repeat proteins involved in chloroplast RNA editing Proc. Natl. Acad. Sci. USA 104 2007 8178 8183 (Pubitemid 47185895)
8. A.-L. Chateigner-Boutin, M. Ramos-Vega, A. Guevara-García, C. Andrés, M. Gutiérrez-Nava, A. Cantero, E. Delannoy, L.F. Jiménez, C. Lurin, I. Small, and P. León CLB19, a pentatricopeptide repeat protein required for editing of rpoA and clpP chloroplast transcripts Plant J. 56 2008 590 602
9. K. Hammani, K. Okuda, S.K. Tanz, A.-L. Chateigner-Boutin, T. Shikanai, and I. Small A study of new Arabidopsis chloroplast RNA editing mutants reveals general features of editing factors and their target sites Plant Cell 21 2009 3686 3699
10. W. Zhou, Y. Cheng, A. Yap, A.-L. Chateigner-Boutin, E. Delannoy, K. Hammani, I. Small, and J. Huang The Arabidopsis gene YS1 encoding a DYW protein is required for editing of rpoB transcripts and the rapid development of chloroplasts during early growth Plant J. 58 2009 82 96
11. A. Zehrmann, D. Verbitskiy, J.A. van der Merwe, A. Brennicke, and M. Takenaka A DYW domain-containing pentatricopeptide repeat protein is required for RNA editing at multiple sites in mitochondria of Arabidopsis thaliana Plant Cell 21 2009 558 567
12. S.-R. Kim, J.-I. Yang, S. Moon, C.-H. Ryu, K. An, J. Yim, and G. An Rice OGR1 encodes a pentatricopeptide repeat-DYW protein and is essential for RNA editing in mitochondria Plant J. 59 2009 738 749
13. M. Takenaka MEF9, an E-subclass pentatricopeptide repeat protein, is required for an RNA editing event in the nad7 transcript in mitochondria of Arabidopsis Plant Physiol. 152 2010 939 947
14. S. Bentolia, W. Knight, and M. Hanson Natural variation in Arabidopsis leads to the identification of REME1, a pentatricopeptide repeat-DYW protein controlling the editing of mitochondrial transcripts Plant Physiol. 154 2010 1966 1982
15. S. Fujii, and I. Small The evolution of RNA editing and pentatricopeptide repeat genes New Phytologist 191 2011 37 47
16. C. Lurin, C. Andrés, S. Aubourg, M. Bellaoul, F. Bitton, C. Bruyére, M. Caboche, C. Debast, J. Guilberto, B. Hoffmann, A. Lechamy, M. Le Ret, M.L. Martin-Magniette, H. Mireau, N. Peeters, J.-P. Renou, B. Szurek, L. Taconnat, and I. Small Genome-wide analysis of Arabidopsis pentatricopeptide repeat proteins reveals their essential role in organelle biogenesis Plant Cell 16 2004 2089 2103 (Pubitemid 39059730)
17. N. OToole, M. Hattori, C. Andrés, K. Iida, C. Lurin, C. Schmitz-Linneweber, M. Sugita, and I. Small On the expansion of the pentatricopeptide repeat gene family in plants Mol. Biol. Evol. 25 2008 1120 1128
18. Y. Miyata, and M. Sugita Tissue- and stage-specific RNA editing of rps14 transcripts in moss (Physcomitrella patens) chloroplasts J. Plant Physiol. 161 2004 113 115 (Pubitemid 38225502)
19. M. Rüdinger, H.T. Funk, S.A. Rensing, U.G. Maier, and V. Knoop RNA editing: only eleven sites are present in the Physcomitrella patens miotochondrial transcriptome and a universal nomenclature proposal Mol. Genet. Genom. 281 2009 473 481
20. E. Tasaki, M. Hattori, and M. Sugita The moss pentatricopeptide repeat protein with a DYW domain is responsible for RNA editing of mitochondrial ccmFc transcript Plant J. 62 2010 560 570
21. S. Ohtani, M. Ichinose, E. Tasaki, Y. Aoki, Y. Komura, and M. Sugita Targeted gene disruption identifies three PPR-DYW proteins involved in RNA editing for five editing sites of the moss mitochondrial transcripts Plant Cell Physiol. 51 2010 1942 1949
22. M. Hattori, H. Miyake, and M. Sugita A pentatricopeptide repeat protein is required for RNA processing of clpP pre-mRNA in moss chloroplasts J. Biol. Chem. 282 2007 10773 10782 (Pubitemid 47093403)
23. Y. Niwa, T. Hirano, K. Yoshimoto, M. Shimizu, and H. Kobayashi Non-invasive quantitative detection and applications of non-toxic, S65T-type green fluorescent protein in living plants Plant J. 18 1999 456 463
24. T. Nakagawa, T. Suzuki, S. Murata, S. Nakamura, T. Hino, K. Maeo, R. Tabata, T. Kawai, K. Tanaka, Y. Niwa, Y. Watanabe, K. Nakamura, T. Kimura, and S. Ishiguro Improved gateway binary vectors: high-performance vectors for creation of fusion constructs in transgenic analysis of plants Biosci. Biotechnol. Biochem. 71 2007 2095 2100 (Pubitemid 350113146)
25. S.A. Rensing, D. Lang, A.D. Zimmer, A. Terry, A. Salamov, and H. Shapiro The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants Science 319 2008 64 69
26. I. Small, N. Peeters, F. Legeal, and C. Lurin Predotar: a tool for rapidly screening proteomes for N-terminal targeting sequences Proteomics 4 2004 1581 1590 (Pubitemid 38738317)
27. O. Emanuelsson, H. Nielsen, S. Brunak, and G. von Heijne Predicting subcellular localization of proteins based on their N-terminal amino acid sequence J. Mol. Biol. 300 2000 1005 1016
28. M. Rüdinger, P. Szovenyi, S.A. Rensing, and V. Knoop Assigning DYW-type PPR proteins to RNA editing sites in the funariid mosses Physcomitrella patens and Funaria hygrometrica Plant J. 2011 (doi: 10.1111/j.1365-313X.2011. 04600.x)