High-resolution fluorescence imaging via pattern-illuminated Fourier ptychography

Optics Express

Volumn 22, Issue 17, 2014, Pages 20856-20870

  Dong, Siyuan ^a   Nanda, Pariksheet ^a   Shiradkar, Radhika ^a   Guo, Kaikai ^a   Zheng, Guoan ^a,b  

^a UNIVERSITY OF CONNECTICUT   (United States)

^b University of Connecticut   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DIAGNOSIS; DIFFRACTION; FLUORESCENCE MICROSCOPY; FOURIER TRANSFORMS;

ALTERNATIVE SOLUTIONS; BIOLOGICAL RESEARCH; FLUORESCENCE IMAGING; INTENSITY CONSTRAINTS; INTENSITY MEASUREMENTS; LOW RESOLUTION IMAGES; STRUCTURED ILLUMINATION MICROSCOPY; UNKNOWN ILLUMINATIONS;

FLUORESCENCE;

EID: 84906761674     PISSN: None     EISSN: 10944087     Source Type: Journal    
DOI: 10.1364/OE.22.020856     Document Type: Article

References (42)

1. J. Pawley, Handbook of Biological Confocal Microscopy (Springer, 2010).
2. M. G. Gustafsson, "Surpassing the lateral resolution limit by a factor of two using structured illumination microscopy," J. Microsc. 198(2), 82-87 (2000).
3. M. G. Gustafsson, "Nonlinear structured-illumination microscopy: wide-field fluorescence imaging with theoretically unlimited resolution," Proc. Natl. Acad. Sci. U.S.A. 102(37), 13081-13086 (2005).
4. M. G. Gustafsson, L. Shao, P. M. Carlton, C. J. Wang, I. N. Golubovskaya, W. Z. Cande, D. A. Agard, and J. W. Sedat, "Three-dimensional resolution doubling in wide-field fluorescence microscopy by structured illumination," Biophys. J. 94(12), 4957-4970 (2008).
5. R. Heintzmann and M. G. Gustafsson, "Subdiffraction resolution in continuous samples," Nat. Photonics 3(7), 362-364 (2009).
6. P. Kner, B. B. Chhun, E. R. Griffis, L. Winoto, and M. G. Gustafsson, "Super-resolution video microscopy of live cells by structured illumination," Nat. Methods 6(5), 339-342 (2009).
7. E. Mudry, K. Belkebir, J. Girard, J. Savatier, E. Le Moal, C. Nicoletti, M. Allain, and A. Sentenac, "Structured illumination microscopy using unknown speckle patterns," Nat. Photonics 6(5), 312-315 (2012).
8. A. Jost and R. Heintzmann, "Superresolution multidimensional imaging with structured illumination microscopy," Annu. Rev. Mater. Res. 43(1), 261-282 (2013).
9. J. Min, J. Jang, D. Keum, S.-W. Ryu, C. Choi, K.-H. Jeong, and J. C. Ye, "Fluorescent microscopy beyond diffraction limits using speckle illumination and joint support recovery," Sci. Rep. 3, 2075 (2013).
10. P. T. C. So, H.-S. Kwon, and C. Y. Dong, "Resolution enhancement in standing-wave total internal reflection microscopy: a point-spread-function engineering approach," J. Opt. Soc. Am. A 18(11), 2833-2845 (2001).
11. J. García, Z. Zalevsky, and D. Fixler, "Synthetic aperture superresolution by speckle pattern projection," Opt. Express 13(16), 6073-6078 (2005).
12. A. Gur, D. Fixler, V. Micó, J. Garcia, and Z. Zalevsky, "Linear optics based nanoscopy," Opt. Express 18(21), 22222-22231 (2010).
13. C. Ventalon and J. Mertz, "Quasi-confocal fluorescence sectioning with dynamic speckle illumination," Opt. Lett. 30(24), 3350-3352 (2005).
14. C. Ventalon and J. Mertz, "Dynamic speckle illumination microscopy with translated versus randomized speckle patterns," Opt. Express 14(16), 7198-7209 (2006).
15. C. Ventalon, R. Heintzmann, and J. Mertz, "Dynamic speckle illumination microscopy with wavelet prefiltering," Opt. Lett. 32(11), 1417-1419 (2007).
16. Z. R. Hoffman and C. A. DiMarzio, "Structured illumination microscopy using random intensity incoherent reflectance," J. Biomed. Opt. 18(6), 061216 (2013).
17. M. A. Neil, R. Juskaitis, and T. Wilson, "Method of obtaining optical sectioning by using structured light in a conventional microscope," Opt. Lett. 22(24), 1905-1907 (1997).
18. J. G. Walker and K. I. Hopcraft, "A diffuser-based optical sectioning fluorescence microscope," Meas. Sci. Technol. 24(12), 125404 (2013).
19. D. Dan, M. Lei, B. Yao, W. Wang, M. Winterhalder, A. Zumbusch, Y. Qi, L. Xia, S. Yan, and Y. Yang, "DMDbased LED-illumination Super-resolution and optical sectioning microscopy," Sci. Rep. 3, 1116 (2013).
20. K. Wicker, "Non-iterative determination of pattern phase in structured illumination microscopy using autocorrelations in Fourier space," Opt. Express 21(21), 24692-24701 (2013).
21. R. Ayuk, H. Giovannini, A. Jost, E. Mudry, J. Girard, T. Mangeat, N. Sandeau, R. Heintzmann, K. Wicker, K. Belkebir, and A. Sentenac, "Structured illumination fluorescence microscopy with distorted excitations using a filtered blind-SIM algorithm," Opt. Lett. 38(22), 4723-4726 (2013).
22. G. Zheng, R. Horstmeyer, and C. Yang, "Wide-field, high-resolution Fourier ptychographic microscopy," Nat. Photonics 7(9), 739-745 (2013).
23. X. Ou, R. Horstmeyer, C. Yang, and G. Zheng, "Quantitative phase imaging via Fourier ptychographic microscopy," Opt. Lett. 38(22), 4845-4848 (2013).
24. S. Dong, R. Horstmeyer, R. Shiradkar, K. Guo, X. Ou, Z. Bian, H. Xin, and G. Zheng, "Aperture-scanning Fourier ptychography for 3D refocusing and super-resolution macroscopic imaging," Opt. Express 22(11), 13586-13599 (2014).
25. S. Dong, R. Shiradkar, P. Nanda, and G. Zheng, "Spectral multiplexing and coherent-state decomposition in Fourier ptychographic imaging," Biomed. Opt. Express 5(6), 1757-1767 (2014).
26. G. Zheng, "Breakthroughs in photonics 2013: Fourier ptychographic imaging," Photonics Journal, IEEE 6, 1-7 (2014).
27. G. Zheng, X. Ou, R. Horstmeyer, J. Chung, and C. Yang, "Fourier ptychographic microscopy: a gigapixel superscope for biomedicine," Optics and Photonics News 25(4 April Issue), 26-33 (2014).
28. A. Williams, J. Chung, X. Ou, G. Zheng, S. Rawal, Z. Ao, R. Datar, C. Yang, and R. Cote, "Fourier ptychographic microscopy for filtration-based circulating tumor cell enumeration and analysis," J. Biomed. Opt. 19(6), 066007 (2014).
29. R. Gerchberg, "A practical algorithm for the determination of phase from image and diffraction plane pictures," Optik (Stuttg.) 35, 237 (1972).
30. J. R. Fienup, "Reconstruction of an object from the modulus of its Fourier transform," Opt. Lett. 3(1), 27-29 (1978).
31. L. Taylor, "The phase retrieval problem," Antennas and Propagation, IEEE Transactions on 29(2), 386-391 (1981).
32. J. R. Fienup, "Phase retrieval algorithms: a comparison," Appl. Opt. 21(15), 2758-2769 (1982).
33. R. A. Gonsalves, "Phase retrieval and diversity in adaptive optics," Opt. Eng. 21(5), 215829 (1982).
34. B. H. Dean and C. W. Bowers, "Diversity selection for phase-diverse phase retrieval," J. Opt. Soc. Am. A 20(8), 1490-1504 (2003).
35. C.-H. Lu, C. Barsi, M. O. Williams, J. N. Kutz, and J. W. Fleischer, "Phase retrieval using nonlinear diversity," Appl. Opt. 52(10), D92-D96 (2013).
36. H. M. L. Faulkner and J. M. Rodenburg, "Movable aperture lensless transmission microscopy: a novel phase retrieval algorithm," Phys. Rev. Lett. 93(2), 023903 (2004).
37. M. Guizar-Sicairos and J. R. Fienup, "Phase retrieval with transverse translation diversity: a nonlinear optimization approach," Opt. Express 16(10), 7264-7278 (2008).
38. X. Ou, G. Zheng, and C. Yang, "Embedded pupil function recovery for Fourier ptychographic microscopy," Opt. Express 22(5), 4960-4972 (2014).
39. P. Thibault, M. Dierolf, O. Bunk, A. Menzel, and F. Pfeiffer, "Probe retrieval in ptychographic coherent diffractive imaging," Ultramicroscopy 109(4), 338-343 (2009).
40. F. Hüe, J. M. Rodenburg, A. M. Maiden, and P. A. Midgley, "Extended ptychography in the transmission electron microscope: Possibilities and limitations," Ultramicroscopy 111(8), 1117-1123 (2011).
41. Z. Bian, S. Dong, and G. Zheng, "Adaptive system correction for robust Fourier ptychographic imaging," Opt. Express 21(26), 32400-32410 (2013).
42. S. Dong, Z. Bian, R. Shiradkar, and G. Zheng, "Sparsely sampled Fourier ptychography," Opt. Express 22(5), 5455-5464 (2014).