-
1
-
-
0033946805
-
Three-dimensional electron cryo-microscopy as a powerful structural tool in molecular medicine
-
Auer, M. Three-dimensional electron cryo-microscopy as a powerful structural tool in molecular medicine. J Mol Med (Berl). 78 (4), 191-202 (2000).
-
(2000)
J Mol Med (Berl)
, vol.78
, Issue.4
, pp. 191-202
-
-
Auer, M.1
-
2
-
-
80355141936
-
Assessing two-dimensional crystallization trials of small membrane proteins for structural biology studies by electron crystallography
-
doi:10.3791/1846
-
Johnson, M. C., Rudolph, F., Dreaden, T. M., Zhao, G., Barry, B. A., & Schmidt-Krey, I. Assessing two-dimensional crystallization trials of small membrane proteins for structural biology studies by electron crystallography. Journal of visualized experiments?: JoVE. (44), e1846, doi:10.3791/1846 (2010).
-
(2010)
Journal of Visualized Experiments?: JoVE
, Issue.44
, pp. 1846
-
-
Johnson, M.C.1
Rudolph, F.2
Dreaden, T.M.3
Zhao, G.4
Barry, B.A.5
Schmidt-Krey, I.6
-
3
-
-
84885865666
-
Correlative microscopy for 3D structural analysis of dynamic interactions
-
doi:10.3791/50386
-
Jun, S., Zhao, G., Ning, J., Gibson, G. A., Watkins, S. C., & Zhang, P. Correlative microscopy for 3D structural analysis of dynamic interactions. Journal of visualized experiments?: JoVE. (76), e50386, doi:10.3791/50386 (2013).
-
(2013)
Journal of Visualized Experiments?: JoVE
, Issue.76
, pp. 50386
-
-
Jun, S.1
Zhao, G.2
Ning, J.3
Gibson, G.A.4
Watkins, S.C.5
Zhang, P.6
-
4
-
-
80355131507
-
Structure of HIV-1 capsid assemblies by cryo-electron microscopy and iterative helical real-space reconstruction. Journal of visualized experiments?
-
doi:10.3791/3041
-
Meng, X., Zhao, G., & Zhang, P. Structure of HIV-1 capsid assemblies by cryo-electron microscopy and iterative helical real-space reconstruction. Journal of visualized experiments?: JoVE. (54), e3041, doi:10.3791/3041 (2011).
-
(2011)
JoVE
, Issue.54
, pp. 3041
-
-
Meng, X.1
Zhao, G.2
Zhang, P.3
-
5
-
-
80055115964
-
Electron Cryotomography of Bacterial Cells
-
doi:doi:10.3791/1943
-
Chen, S., McDowall, A., et al. Electron Cryotomography of Bacterial Cells. Journal of visualized experiments?: JoVE (39), e1943, doi:doi:10.3791/1943 (2010).
-
(2010)
Journal of Visualized Experiments?: JoVE
, Issue.39
, pp. 1943
-
-
Chen, S.1
McDowall, A.2
-
6
-
-
83455163507
-
Determination of molecular structures of HIV envelope glycoproteins using cryo-electron tomography and automated sub-tomogram averaging
-
doi:10.3791/2770
-
Meyerson, J. R., White, T. A., et al. Determination of molecular structures of HIV envelope glycoproteins using cryo-electron tomography and automated sub-tomogram averaging. Journal of visualized experiments?: JoVE (58), e2770, doi:10.3791/2770 (2011).
-
(2011)
Journal of Visualized Experiments?: JoVE
, Issue.58
, pp. 2770
-
-
Meyerson, J.R.1
White, T.A.2
-
7
-
-
14844330221
-
Structural studies by electron tomography: From cells to molecules
-
doi:10.1146/annurev.biochem.73.011303.074112
-
Lucic, V., Forster, F., & Baumeister, W. Structural studies by electron tomography: from cells to molecules. Annu Rev Biochem. 74, 833-865, doi:10.1146/annurev.biochem.73.011303.074112 (2005).
-
(2005)
Annu Rev Biochem
, vol.74
, pp. 833-865
-
-
Lucic, V.1
Forster, F.2
Baumeister, W.3
-
8
-
-
0344983351
-
Volumetric feature extraction and visualization of tomographic molecular imaging
-
Bajaj, C., Yu, Z., & Auer, M. Volumetric feature extraction and visualization of tomographic molecular imaging. J Struct Biol. 144 (1-2), 132-143 (2003).
-
(2003)
J Struct Biol
, vol.144
, Issue.1-2
, pp. 132-143
-
-
Bajaj, C.1
Yu, Z.2
Auer, M.3
-
9
-
-
0348134935
-
A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks
-
doi:10.1002/cyto.a.10079
-
Lin, G., Adiga, U., Olson, K., Guzowski, J. F., Barnes, C. A., & Roysam, B. A hybrid 3D watershed algorithm incorporating gradient cues and object models for automatic segmentation of nuclei in confocal image stacks. Cytometry A. 56 (1), 23-36, doi:10.1002/cyto.a.10079 (2003).
-
(2003)
Cytometry A
, vol.56
, Issue.1
, pp. 23-36
-
-
Lin, G.1
Adiga, U.2
Olson, K.3
Guzowski, J.F.4
Barnes, C.A.5
Roysam, B.6
-
10
-
-
0036424944
-
A novel three-dimensional variant of the watershed transform for segmentation of electron density maps
-
Volkmann, N. A novel three-dimensional variant of the watershed transform for segmentation of electron density maps. Journal of Structural Biology. 138 (1), 123-129 (2002).
-
(2002)
Journal of Structural Biology
, vol.138
, Issue.1
, pp. 123-129
-
-
Volkmann, N.1
-
11
-
-
84855838451
-
Automated segmentation of electron tomograms for a quantitative description of actin filament networks
-
doi:10.1016/j.jsb.2011.08.012
-
Rigort, A., Günther, D., et al. Automated segmentation of electron tomograms for a quantitative description of actin filament networks. Journal of structural biology. 177 (1), 135-44, doi:10.1016/j.jsb.2011.08.012 (2012).
-
(2012)
Journal of Structural Biology
, vol.177
, Issue.1
, pp. 135-144
-
-
Rigort, A.1
Günther, D.2
-
12
-
-
33846221503
-
A Review of Statistical Approaches to Level Set Segmentation: Integrating Color, Texture, Motion and Shape
-
doi:10.1007/s11263-006-8711-1
-
Cremers, D., Rousson, M., & Deriche, R. A Review of Statistical Approaches to Level Set Segmentation: Integrating Color, Texture, Motion and Shape. International Journal of Computer Vision. 72 (2), 195-215, doi:10.1007/s11263-006-8711-1 (2007).
-
(2007)
International Journal of Computer Vision
, vol.72
, Issue.2
, pp. 195-215
-
-
Cremers, D.1
Rousson, M.2
Deriche, R.3
-
13
-
-
77649270941
-
Shape-based human detection and segmentation via hierarchical part-template matching
-
doi:10.1109/TPAMI.2009.204
-
Lin, Z., & Davis, L. S. Shape-based human detection and segmentation via hierarchical part-template matching. IEEE Trans Pattern Anal Mach Intell. 32 (4), 604-618, doi:10.1109/TPAMI.2009.204 (2010).
-
(2010)
IEEE Trans Pattern Anal Mach Intell
, vol.32
, Issue.4
, pp. 604-618
-
-
Lin, Z.1
Davis, L.S.2
-
14
-
-
4444221565
-
UCSF Chimera--a visualization system for exploratory research and analysis
-
doi:10.1002/jcc.20084
-
Pettersen, E. F., Goddard, T. D., et al. UCSF Chimera--a visualization system for exploratory research and analysis. J Comput Chem. 25 (13), 1605-1612, doi:10.1002/jcc.20084 (2004).
-
(2004)
J Comput Chem
, vol.25
, Issue.13
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
-
15
-
-
0029879295
-
Computer visualization of three-dimensional image data using IMOD
-
doi:10.1006/jsbi.1996.0013
-
Kremer, J. R., Mastronarde, D. N., & McIntosh, J. R. Computer visualization of three-dimensional image data using IMOD. J Struct Biol. 116 (1), 71-76, doi:10.1006/jsbi.1996.0013 (1996).
-
(1996)
J Struct Biol
, vol.116
, Issue.1
, pp. 71-76
-
-
Kremer, J.R.1
Mastronarde, D.N.2
McIntosh, J.R.3
-
16
-
-
84862900534
-
Macromolecular structure modeling from 3D EM using VolRover 2.0
-
doi:10.1002/bip.22052
-
Zhang, Q., Bettadapura, R., & Bajaj, C. Macromolecular structure modeling from 3D EM using VolRover 2.0. Biopolymers. 97 (9), 709-731, doi:10.1002/bip.22052 (2012).
-
(2012)
Biopolymers
, vol.97
, Issue.9
, pp. 709-731
-
-
Zhang, Q.1
Bettadapura, R.2
Bajaj, C.3
-
17
-
-
0032970357
-
A review of focused ion beam milling techniques for TEM specimen preparation
-
doi 1016/S0968-4328(99)00005-0
-
Giannuzzi, L. A., & Stevie, F. A. A review of focused ion beam milling techniques for TEM specimen preparation. Micron. 30 (3), 197-204, doi:http://dx.doi.org/10.1016/S0968-4328(99)00005-0 (1999).
-
(1999)
Micron
, vol.30
, Issue.3
, pp. 197-204
-
-
Giannuzzi, L.A.1
Stevie, F.A.2
-
18
-
-
33744979750
-
Site-specific 3D imaging of cells and tissues with a dual beam microscope
-
doi:10.1016/j.jsb.2006.03.006
-
Heymann, J. A. W., Hayles, M., Gestmann, I., Giannuzzi, L. A., Lich, B., & Subramaniam, S. Site-specific 3D imaging of cells and tissues with a dual beam microscope. Journal of structural biology. 155 (1), 63-73, doi:10.1016/j.jsb.2006.03.006 (2006).
-
(2006)
Journal of Structural Biology
, vol.155
, Issue.1
, pp. 63-73
-
-
Heymann, J.A.W.1
Hayles, M.2
Gestmann, I.3
Giannuzzi, L.A.4
Lich, B.5
Subramaniam, S.6
-
19
-
-
80355132753
-
Focussed ion beam milling and scanning electron microscopy of brain tissue
-
doi:10.3791/2588
-
Knott, G., Rosset, S., & Cantoni, M. Focussed ion beam milling and scanning electron microscopy of brain tissue. Journal of visualized experiments?: JoVE. (53), e2588, doi:10.3791/2588 (2011).
-
(2011)
Journal of Visualized Experiments?: JoVE
, vol.53
, pp. 2588
-
-
Knott, G.1
Rosset, S.2
Cantoni, M.3
-
20
-
-
63449083752
-
Focused Ion Beam (FIB) combined with SEM and TEM: Advanced analytical tools for studies of chemical composition, microstructure and crystal structure in geomaterials on a nanometre scale
-
doi 1016/j.chemgeo.2008.05.019
-
Wirth, R. Focused Ion Beam (FIB) combined with SEM and TEM: Advanced analytical tools for studies of chemical composition, microstructure and crystal structure in geomaterials on a nanometre scale. Chemical Geology. 261 (3-4), 217-229, doi:http://dx.doi.org/10.1016/j.chemgeo.2008.05.019 (2009).
-
(2009)
Chemical Geology
, vol.261
, Issue.3-4
, pp. 217-229
-
-
Wirth, R.1
-
21
-
-
14044262855
-
Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure
-
doi:10.1371/journal.pbio.0020329
-
Denk, W., & Horstmann, H. Serial block-face scanning electron microscopy to reconstruct three-dimensional tissue nanostructure. PLoS Biol. 2 (11), e329, doi:10.1371/journal.pbio.0020329 (2004).
-
(2004)
PLoS Biol
, vol.2
, Issue.11
, pp. 329
-
-
Denk, W.1
Horstmann, H.2
-
22
-
-
0035783287
-
Noise reduction in electron tomographic reconstructions using nonlinear anisotropic diffusion
-
doi:10.1006/jsbi.2001.4406
-
Frangakis, A. S., & Hegerl, R. Noise reduction in electron tomographic reconstructions using nonlinear anisotropic diffusion. Journal of structural biology. 135 (3), 239-50, doi:10.1006/jsbi.2001.4406 (2001).
-
(2001)
Journal of Structural Biology
, vol.135
, Issue.3
, pp. 239-250
-
-
Frangakis, A.S.1
Hegerl, R.2
-
23
-
-
0344983355
-
Applications of a bilateral denoising filter in biological electron microscopy
-
Jiang, W., Baker, M. L., Wu, Q., Bajaj, C., & Chiu, W. Applications of a bilateral denoising filter in biological electron microscopy. Journal of Structural Biology. 144 (1), 114-122 (2003).
-
(2003)
Journal of Structural Biology
, vol.144
, Issue.1
, pp. 114-122
-
-
Jiang, W.1
Baker, M.L.2
Wu, Q.3
Bajaj, C.4
Chiu, W.5
-
24
-
-
34248167660
-
Efficient automatic noise reduction of electron tomographic reconstructions based on iterative median filtering
-
doi:10.1016/j.jsb.2006.10.030
-
Van der Heide, P., Xu, X.-P., Marsh, B. J., Hanein, D., & Volkmann, N. Efficient automatic noise reduction of electron tomographic reconstructions based on iterative median filtering. Journal of structural biology. 158 (2), 196-204, doi:10.1016/j.jsb.2006.10.030 (2007).
-
(2007)
Journal of Structural Biology
, vol.158
, Issue.2
, pp. 196-204
-
-
Van der Heide, P.1
Xu, X.-P.2
Marsh, B.J.3
Hanein, D.4
Volkmann, N.5
-
25
-
-
84863205849
-
NIH Image to ImageJ: 25 years of image analysis
-
Schneider, C. A., Rasband, W. S., & Eliceiri, K. W. NIH Image to ImageJ: 25 years of image analysis. Nat Methods. 9 (7), 671-675 (2012).
-
(2012)
Nat Methods
, vol.9
, Issue.7
, pp. 671-675
-
-
Schneider, C.A.1
Rasband, W.S.2
Eliceiri, K.W.3
-
26
-
-
84862520770
-
Fiji: An open-source platform for biological-image analysis
-
doi:10.1038/nmeth.2019
-
Schindelin, J., Arganda-Carreras, I., et al. Fiji: an open-source platform for biological-image analysis. Nat Methods. 9 (7), 676-682, doi:10.1038/nmeth.2019 (2012).
-
(2012)
Nat Methods
, vol.9
, Issue.7
, pp. 676-682
-
-
Schindelin, J.1
Arganda-Carreras, I.2
-
27
-
-
84906348413
-
-
The MathWorks, I. MATLAB
-
The MathWorks, I. MATLAB. (2012).
-
(2012)
-
-
-
28
-
-
0018306059
-
A Threshold Selection Method from Gray-Level Histograms. Systems, Man and Cybernetics
-
Otsu, N. A Threshold Selection Method from Gray-Level Histograms. Systems, Man and Cybernetics, IEEE Transactions on. 9, 62-66 (1979).
-
(1979)
IEEE Transactions On
, vol.9
, pp. 62-66
-
-
Otsu, N.1
-
29
-
-
84906348415
-
-
VLFeat: An Open and Portable Library of Computer Vision Algorithms
-
Vedaldi, A., & Fulkerson, B. VLFeat: An Open and Portable Library of Computer Vision Algorithms. (2008).
-
(2008)
-
-
Vedaldi, A.1
Fulkerson, B.2
-
30
-
-
8644227753
-
What are Textons?
-
doi:10.1007/s11263-005-4638-1
-
Zhu, S.-C., Guo, C., Wang, Y., & Xu, Z. What are Textons? International Journal of Computer Vision. 62 (1-2), 121-143, doi:10.1007/s11263-005-4638-1 (2005).
-
(2005)
International Journal of Computer Vision
, vol.62
, Issue.1-2
, pp. 121-143
-
-
Zhu, S.-C.1
Guo, C.2
Wang, Y.3
Xu, Z.4
-
31
-
-
33749517212
-
The chloride intracellular channel protein CLIC5 is expressed at high levels in hair cell stereocilia and is essential for normal inner ear function. The Journal of neuroscience?
-
doi:10.1523/JNEUROSCI.2166-06.2006
-
Gagnon, L. H., Longo-Guess, C. M., et al. The chloride intracellular channel protein CLIC5 is expressed at high levels in hair cell stereocilia and is essential for normal inner ear function. The Journal of neuroscience?: the official journal of the Society for Neuroscience. 26 (40), 10188-10198, doi:10.1523/JNEUROSCI.2166-06.2006 (2006).
-
(2006)
The Official Journal of the Society For Neuroscience
, vol.26
, pp. 10188-10198
-
-
Gagnon, L.H.1
Longo-Guess, C.M.2
-
32
-
-
0023301282
-
A new diploid nontumorigenic human breast epithelial cell line isolated and propagated in chemically defined medium
-
Briand, P., Petersen, O. W., & Van Deurs, B. A new diploid nontumorigenic human breast epithelial cell line isolated and propagated in chemically defined medium. In vitro cellular & developmental biology?: journal of the Tissue Culture Association. 23 (3), 181-1818 (1987).
-
(1987)
In Vitro Cellular & Developmental Biology?: Journal of the Tissue Culture Association
, vol.23
, Issue.3
, pp. 181-1818
-
-
Briand, P.1
Petersen, O.W.2
van Deurs, B.3
-
33
-
-
0026738947
-
Interaction with basement membrane serves to rapidly distinguish growth and differentiation pattern of normal and malignant human breast epithelial cells
-
Petersen, O. W., Rønnov-Jessen, L., Howlett, A. R., & Bissell, M. J. Interaction with basement membrane serves to rapidly distinguish growth and differentiation pattern of normal and malignant human breast epithelial cells. Proceedings of the National Academy of Sciences of the United States of America. 89 (19), 9064-6068 (1992).
-
(1992)
Proceedings of the National Academy of Sciences of the United States of America
, vol.89
, Issue.19
, pp. 9064-9068
-
-
Petersen, O.W.1
Rønnov-Jessen, L.2
Howlett, A.R.3
Bissell, M.J.4
-
34
-
-
84875890050
-
Molecular architecture of the chick vestibular hair bundle
-
doi:10.1038/nn.3312
-
Shin, J.-B., Krey, J. F., et al. Molecular architecture of the chick vestibular hair bundle. Nature neuroscience. 16 (3), 365-374, doi:10.1038/nn.3312 (2013).
-
(2013)
Nature Neuroscience
, vol.16
, Issue.3
, pp. 365-374
-
-
Shin, J.-B.1
Krey, J.F.2
-
35
-
-
84863004832
-
Simplified Surface Models of Tubular Bacteria and Cytoskeleta
-
Yang, W., Zeng, Z., Max, N., Auer, M., & Crivelli, S. Simplified Surface Models of Tubular Bacteria and Cytoskeleta. Journal of Information & Computational Science. 9 (6), 1589-1598 (2012).
-
(2012)
Journal of Information & Computational Science
, vol.9
, Issue.6
, pp. 1589-1598
-
-
Yang, W.1
Zeng, Z.2
Max, N.3
Auer, M.4
Crivelli, S.5
|