Planomicrobium soli sp. nov., isolated from soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 64, Issue PART 8, 2014, Pages 2700-2705

  Luo, Xiaonan ^a   Zhang, Jianli ^a   Li, Dai ^a   Xin, Yuhua ^b   Xin, Di ^a   Fan, Lei ^a  

^a BEIJING INSTITUTE OF TECHNOLOGY   (China)

^b INSTITUTE OF MICROBIOLOGY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL; FATTY ACID; MENAQUINONE; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CELL STRUCTURE; CHINA; DNA BASE COMPOSITION; GENE SEQUENCE; GENOTYPE; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PLANOMICROBIUM CHINENSE; PLANOMICROBIUM FLAVIDUM; PLANOMICROBIUM GLACIEI; PLANOMICROBIUM KOREENSE; PLANOMICROBIUM MCMEEKINII; PLANOMICROBIUM OKEANOKOITES; PLANOMICROBIUM SOLI; PRIORITY JOURNAL; SOIL ANALYSIS; TYPE STRAIN;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; FATTY ACIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PIGMENTATION; PLANOCOCCACEAE; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY; VITAMIN K 2;

EID: 84906049787     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.055426-0     Document Type: Article

References (35)

1. Bruns, A., Rohde, M. & Berthe-Corti, L. (2001). Muricauda ruestringensis gen. nov., sp. nov., a facultatively anaerobic, appendaged bacterium from German North Sea intertidal sediment. Int J Syst Evol Microbiol 51, 1997-2006.
2. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2, 4-diaminobutyric acid. J Appl Bacteriol 48, 459-470.
3. Collins, M. D., Howarth, O. W., Grund, E. & Kroppenstedt, R. M. (1987). Isolation and structural determination of new members of the vitamin K2series inNocardia brasiliensis. FEMS Microbiol Lett 41, 35-39.
4. Dai, X., Wang, Y.-N., Wang, B.-J., Liu, S.-J. & Zhou, Y.-G. (2005). Planomicrobium chinensesp. nov., isolated from coastal sediment, and transfer of Planococcus psychrophilusandPlanococcus alkanoclasticus toPlanomicrobiumasPlanomicrobium psychrophilumcomb. nov. and Planomicrobium alkanoclasticumcomb. nov. Int J Syst Evol Microbiol 55, 699-702.
5. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
6. Engelhardt, M. A., Daly, K., Swannell, R. P. J. & Head, I. M. (2001). Isolation and characterization of a novel hydrocarbon-degrading, Gram-positive bacterium, isolated from intertidal beach sediment, and description of Planococcus alkanoclasticus sp. nov. J Appl Microbiol 90, 237-247.
7. Goodfellow, M. & Orchard, V. A. (1974). Antibiotic sensitivity of some nocardioform bacteria and its value as a criterion for taxonomy. J Gen Microbiol 83, 375-387.
8. Gordon, R. E. & Mihm, J. M. (1957). A comparative study of some strains received as nocardiae. J Bacteriol 73, 15-27.
9. Huß, V. A., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
10. Jung, Y.-T., Kang, S.-J., Oh, T.-K., Yoon, J.-H. & Kim, B.-H. (2009). Planomicrobium flavidumsp. nov., isolated from a marine solar saltern, and transfer ofPlanococcus stackebrandtiiMayilrajet al. 2005 to the genusPlanomicrobiumasPlanomicrobium stackebrandtii comb. nov. Int J Syst Evol Microbiol 59, 2929-2933.
11. Junge, K., Gosink, J. J., Hoppe, H.-G. & Staley, J. T. (1998). Arthrobacter, Brachybacterium and Planococcus isolates identified from antarctic sea ice brine. Description of Planococcus mcmeekinii, sp. nov. Syst Appl Microbiol 21, 306-314.
12. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
13. Kim, O. S., Cho, Y. J., Lee, K., Yoon, S. H., Kim, M., Na, H., Park, S. C., Jeon, Y. S., Lee, J. H. & other authors (2012). Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
14. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
15. Kluge, A. G. & Farris, J. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
16. Lányi, B. (1987). Classical and rapid identification methods for medically important bacteria. Methods Microbiol 19, 1-67.
17. Leifson, E. (1963). Determination of carbohydrate metabolism of marine bacteria. J Bacteriol 85, 1183-1184.
18. Lu, Z., Liu, Z., Wang, L., Zhang, Y., Qi, W. & Goodfellow, M. (2001). Saccharopolyspora flavasp. nov. andSaccharopolyspora thermophilasp. nov., novel actinomycetes from soil. Int J Syst Evol Microbiol 51, 319-325.
19. Marmur, J. & Doty, P. (1962). Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. J Mol Biol 5, 109-118.
20. Mayilraj, S., Prasad, G. S., Suresh, K., Saini, H. S., Shivaji, S. & Chakrabarti, T. (2005). Planococcus stackebrandtiisp. nov., isolated from a cold desert of the Himalayas, India. Int J Syst Evol Microbiol 55, 91-94.
21. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskoviaand related taxa. J Appl Bacteriol 47, 87-95.
22. Nakagawa, Y., Sakane, T. & Yokota, A. (1996). Emendation of the genusPlanococcusand transfer ofFlavobacterium okeanokoitesZobell and Upham 1944 to the genusPlanococcusasPlanococcus okeanokoites comb. nov. Int J Syst Bacteriol 46, 866-870.
23. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsisrepresents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceaefam. nov. Int J Syst Bacteriol 46, 1088-1092.
24. Reddy, G. S. N., Prakash, J. S. S., Vairamani, M., Prabhakar, S., Matsumoto, G. I. & Shivaji, S. (2002). Planococcus antarcticusand Planococcus psychrophilusspp. nov. isolated from cyanobacterial mat samples collected from ponds in Antarctica. Extremophiles 6, 253-261.
25. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
26. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI, Inc.
27. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
28. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
29. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
30. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). TheCLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
31. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
32. Wu, C., Lu, X., Qin, M., Wang, Y. & Ruan, J. (1989). Analysis of menaquinone compound in microbial cells by HPLC. Microbiology[English translation of Microbiology (Beijing)] 16, 176-178.
33. Yoon, J.-H., Lee, S. T. & Park, Y.-H. (1998). Inter-and intraspecific phylogenetic analysis of the genusNocardioidesand related taxa based on 16S rDNA sequences. Int J Syst Bacteriol 48, 187-194.
34. Yoon, J.-H., Kang, S.-S., Lee, K.-C., Lee, E. S., Kho, Y. H., Kang, K. H. & Park, Y.-H. (2001). Planomicrobium koreensegen. nov., sp. nov., a bacterium isolated from the Korean traditional fermented seafood jeotgal, and transfer of Planococcus okeanokoites(Nakagawa et al. 1996) andPlanococcus mcmeekinii(Junge et al. 1998) to the genus Planomicrobium. Int J Syst Evol Microbiol 51, 1511-1520.
35. Zhang, D.-C., Liu, H.-C., Xin, Y.-H., Yu, Y., Zhou, P.-J. & Zhou, Y. G. (2009). Planomicrobium glaciei sp. nov., a psychrotolerant bacterium isolated from a glacier. Int J Syst Evol Microbiol 59, 1387-1390.