Planococcus stackebrandtii sp. nov., isolated from a cold desert of the Himalayas, India

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 1, 2005, Pages 91-94

  Mayilraj, S ^a   Prasad, G S ^a   Suresh, K ^b   Saini, H S ^c   Shivaji, S ^b   Chakrabarti, T ^a  

^a INSTITUTE OF MICROBIAL TECHNOLOGY   (India)

^b CENTRE FOR CELLULAR AND MOLECULAR BIOLOGY   (India)

^c GURU NANAK DEV UNIVERSITY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; GUANINE; RNA 16S;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA CONTENT; DNA DNA HYBRIDIZATION; INDIA; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PLANOCOCCUS (BACTERIUM); PLANOCOCCUS STACKEBRANDTII; PRIORITY JOURNAL; RNA SEQUENCE; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES IDENTIFICATION;

BACTERIAL TYPING TECHNIQUES; COLD; DESERT CLIMATE; DNA, BACTERIAL; DNA, RIBOSOMAL; GRAM-POSITIVE COCCI; INDIA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); PLANOCOCCUS ANTARCTICUS; PLANOCOCCUS PSYCHROPHILUS; PLANOCOCCUS STACKEBRANDTII; PLANOMICROBIUM; PLANOMICROBIUM MCMEEKINII; PLANOMICROBIUM OKEANOKOITES;

EID: 13244257166     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63290-0     Document Type: Article

References (23)

1. Alam, S. I., Singh, L., Dube, S., Reddy, G. S. N. & Shivaji, S. (2003). Psychrophilic Planococcus maitriensis sp.nov. from Antarctica. Syst Appl Microbiol 26, 505-510.
2. Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
3. Engelhardt, M. A., Daly, K., Swannell, R. P. J. & Head, I. M. (2001). Isolation and characterization of a novel hydrocarbon-degrading, Gram-positive bacterium, isolated from intertidal beach sediment and description of Planococcus alkanoclasticus sp. nov. J Appl Microbiol 90, 237-247.
4. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
5. Hao, M. V. & Komagata, K. (1985). A new species of Planococcus, P. kocurii isolated from fish, frozen foods, and fish curing brine. J Gen Appl Microbiol 31, 441-455.
6. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
7. Migula, W. (1894). Uber ein neues System der Bakterien. Arb Bakteriol Inst Karlsruhe 1, 235-238.
8. Minnikin, D. E. & Goodfellow, M. (1976). Lipid composition in the classification and identification of Nocardia and related taxa. In The Biology of the Nocardiaceae, pp. 160-219. Edited by M. Goodfellow, G. H. Brownell & J. A. Serrano. London: Academic Press.
9. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1978). Menaquinone patterns in the classification of nocardioform and related bacteria. Zentbl Bakteriol Parasitenkd Infektionskr U HygI Abt 1 Suppl. 6, 85-90.
10. Nakagawa, Y., Sakane, T. & Yokota, A. (1996). Emendation of the genus Planococcus and transfer of Flavobacterium okeanokoites Zobell and Upham 1944 to the genus Planococcus as Planococcus okeanokoites comb. nov. Int J Syst Bacteriol 46, 866-870.
11. Pandey, K. K., Mayilraj, S. & Chakrabarti, T. (2002). Pseudomonas indica sp. nov., a novel butane-utilizing species. Int J Syst Evol Microbiol 52, 1559-1567.
12. Rainey, F. A., Ward-Rainey, N., Kroppenstedt, R. M. & Stackebrandt, E. (1996). The genus Nocardiopsis represents a phylogenetically coherent taxon and a distinct actinomycete lineage: proposal of Nocardiopsaceae fam. nov. Int J Syst Bacteriol 46, 1088-1092.
13. Reddy, G. S. N., Aggarwal, R. K., Matsumoto, G. I. & Shivaji, S. (2000). Arthrobacter flavus sp. nov., a psychrophilic bacterium isolated from a pond in McMurdo Dry Valley, Antarctica. Int J Syst Evol Microbiol 50, 1553-1561.
14. Reddy, G. S. N., Prakash, J. S. S., Vairamani, M., Prabhakar, S., Matsumoto, G. I. & Shivaji, S. (2002). Planococcus antarcticus and Planococcus psychrophilus spp. nov. isolated from cyanobacterial mat samples collected from ponds in Antarctica. Extremophiles 6, 253-261.
15. Romano, I., Giordano, A., Lama, L., Nicolaus, B. & Gambacorta, A. (2003). Planococcus rifietensis sp. nov., isolated from algal mat collected from a sulfurous spring in Campania (Italy). Syst Appl Microbiol 26, 357-366.
16. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
17. Shivaji, S., Ray, M. K., Rao, N. S., Saisree, L., Jagannadham, M. V., Kumar, G. S., Reddy, G. S. N. & Bhargava, P. M. (1992). Sphingobacterium antarcticus sp. nov., a psychrotrophic bacterium from the soils of Schirmacher Oasis, Antarctica. Int J Syst Bacteriol 42, 102-106.
18. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
19. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
20. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
21. Tourova, T. P. & Antonov, A. S. (1987). Identification of microorganisms by rapid DNA-DNA hybridization. Methods Microbiol 19, 333-355.
22. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
23. Yoon, J.-H., Weiss, N., Kang, K. H., Oh, T.-K. & Park, Y.-H. (2003). Planococcus maritimus sp. nov., isolated from sea water of a tidal flat in Korea. Int J Syst Evol Microbiol 53, 2013-2017.