Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa

Canadian Journal of Microbiology

Volumn 42, Issue 10, 1996, Pages 989-1005

  Kämpfer, Peter ^a   Kroppenstedt, Reiner M ^b  

^a JUSTUS LIEBIG UNIVERSITY   (Germany)

^b LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

Coryneform bacteria; Differentiation; Fatty acid analysis; Numerical analysis

Indexed keywords

FATTY ACID;

ACTINOMYCETALES; ARTICLE; CONTROLLED STUDY; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; STATISTICAL ANALYSIS; TAXONOMY;

ARTHROBACTER; BACTERIA (MICROORGANISMS); BREVIBACTERIUM; CELLULOMONAS; CLAVIBACTER; CORYNEBACTERIACEAE; CORYNEBACTERIUM; CORYNEBACTERIUM AMMONIAGENES; CORYNEBACTERIUM DIPHTHERIAE; CORYNEBACTERIUM GLUTAMICUM; CORYNEBACTERIUM ULCERANS; CORYNEFORM BACTERIUM; CURTOBACTERIUM; CURTOBACTERIUM FLACCUMFACIENS; ERYSIPELOTHRIX; ERYSIPELOTHRIX RHUSIOPATHIAE; MICROBACTERIUM; RHODOCOCCUS;

EID: 0029799185     PISSN: 00084166     EISSN: None     Source Type: Journal    
DOI: 10.1139/m96-128     Document Type: Article

References (57)

1. Athalye, M., Noble, W.C., and Minnikin, D.E. 1995. Analysis of cellular fatty acids by gas chromatography as a tool in the identification of medically important coryneform bacteria. J. Appl. Bacteriol. 58: 507-512.
2. Bousfield, I.J. 1972. A taxonomic study of some coryneform bacteria. J. Gen. Microbiol. 71: 441-455.
3. Bousfield, I.J., Smith, G.L., Dando, T.R., and Hobbs, G. 1983. Numerical analysis of total fatty acid profiles in the identification of coryneform, nocardioform and some other bacteria. J. Gen. Microbiol. 129: 375-394.
4. Carlson, R.R., and Vidaver, A.K. 1982. Taxonomy of Corynebacterium plant pathogens, including a new pathogen of wheat, based on polyacrylamide gel electrophoresis of cellular proteins. Int. J. Syst. Bacteriol. 32: 315-326.
5. Collins, M.D. 1987. Transfer of Brevibacterium ammoniagenes (Cooke and Keith) to the genus Corynebacterium as Corynebacterium ammoniagenes comb.nov. Int. J. Syst. Bacteriol. 37: 442-443.
6. Collins, M.D., and Jones, D. 1980. Lipids in the classification of coryneform bacteria containing peptidoglycans based on 2,4-diaminobutyric acid (DAB) J. Appl. Bacteriol. 48: 459-470.
7. Collins, M.D., and Jones, D. 1981. Distribution of isoprenoid quinone structural types in bacteria and their taxonomic implications. Microbiol. Rev. 45: 316-354.
8. Collins, M.D., Goodfellow, M., and Minnikin, D.E. 1979. Isoprenoid quinones in the classification of coryneform and related bacteria. J. Gen. Microbiol. 110: 127-136.
9. Collins, M.D., Goodfellow, M., and Minnikin, D.E. 1980. Fatty acid, isoprenoid quinone and polar lipid composition in the classification of Curtobacterium and related taxa. J. Gen. Microbiol. 118: 29-37.
10. Collins, M.D., Farrow, J.A.E., Goodfellow, M., and Minnikin, D.E. 1983. Brevibacterium casei sp.nov. and Brevibacterium epidermidis sp.nov. Syst. Appl. Microbiol. 4: 388-395.
11. Coyle, M.B., Leonard, R.B., Nowowiejski, D.J., Malekniazi, A., and Finn, D.J. 1993. Evidence of multiple taxa within commercially available reference strains of Corynebacterium xerosis. J. Clin. Microbiol. 31: 1788-1793.
12. Davis, M.J., Gillaspie, A.G. Jr., Vidaver, A.K., and Harris, R.W. 1984. Clavibacter, a new genus containing some phytopathogenic coryneform bacteria, including Clavibacter xyli. subsp. xyli sp.nov., subsp.nov. and Clavibacter xyli. subsp. cynodontis subsp.nov., pathogens that cause rattoon stunting disease of sugarcane and bermudagrass stunting disease. Int. J. Syst. Bacteriol. 34: 107-117.
13. Döpfer, H., Stackebrandt, E., and Fiedler, F. 1982. Nucleic acid hybridisation studies on Microbacterium, Curtobacterium, Agromyces and related taxa. J. Gen. Microbiol. 128: 1697-1708.
14. Fiedler, F., Schäffler, M.J., and Stackebrandt, E. 1981. Biochemical and nucleic acid hybridization studies on Brevibacterium linens and related strains. Arch. Microbiol. 129: 85-93.
15. Fox, G.E., and Stackebrandt, E. 1987. The application of 16S rRNA cataloguing and 5S rRNA sequences in bacterial systematics. In Methods in microbiology. Vol. 19. Edited by R. Colwell and R. Grigorova. Academic Press, London. pp. 405-458.
16. Goodfellow, M. 1986. Actinomycetes systematics: present state and future prospects. In biological, biochemical and biomedical aspects of actinomycetes, part B. Edited by G. Szabo, S. Biro, and M. Goodfellow. Academiai Kiado, Budapest. pp. 487-496.
17. Goodfellow, M. 1989. The actinomycetes I. Suprageneric classification of actinomycetes. In Bergey's manual of systematic bacteriology. Vol 3. Edited by J.T. Staley, M.P. Bryant, N. Pfennig, and J.G. Holt. Williams & Wilkins, Baltimore. pp. 2333-2339.
18. Goodfellow, M., and Cross, T. 1984. Classification. In Biology of actinomycetes. Edited by M. Goodfellow, M. Mordarski, and S.T. Williams. Academic Press, London. pp. 7-164.
19. Grund, E. 1987. Untersuchungen zur Chemotaxonomie einiger Actinomyceten und coryneformer Bakterien. PhD-thesis, University Darmstadt, Germany.
20. Henningson, P.J., and Gudmestad, N.C. 1991. Fatty acid analysis of phytopathogenic coryneform bacteria. J. Gen. Microbiol. 137: 417-440.
21. Jones, D. 1975. A numerical taxonomic study of coryneform and related bacteria. J. Gen. Microbiol. 87: 52-96.
22. Jones, D. 1978. An evaluation of the contribution of numerical taxonomic studies to the classification of coryneform bacteria. In Coryneform Bacteria. Edited by I. J. Bousfield and A. G. Callely. Academic Press, London and New York. pp. 13-46.
23. Jones, D., and Collins, M.D. 1986. Irregular, nonsporing Gram-positive rods. In Bergey's manual of systematic bacteriology. Vol 2. Edited by P.H.A. Sneath, N.S. Mair, M.E. Sharpe, and J.G. Holt. Williams & Wilkins, Baltimore. pp. 1261-1266.
24. AL emend Collins et al. 1980. In Bergey's manual of systematic bacteriology. Vol 2. Edited by P.H.A. Sneath, N.S. Mair, M.E. Sharpe, and J.G. Holt. Williams & Wilkins, Baltimore. pp. 1301-1313.
25. Kämpfer, P., Seiler, H., and Dott, W. 1993. A numerical classification of coryneform bacteria and related taxa. J. Gen. Appl. Microbiol. 39: 135-214.
26. Keddie, R.M., and Cure, G.L. 1977. The cell wall composition and distribution of free mycolic acids in named strains of coryneform bacteria and in isolates from various natural souces. J. Appl. Bacteriol. 42: 229-252.
27. AL. In Bergey's manual of systematic bacteriology. Vol 2. Edited by P.H.A. Sneath, N.S. Mair, M.E. Sharpe, and J.G. Holt. Williams & Wilkins, Baltimore. pp. 1288-1301.
28. Koch, C., Klatte, S., Schumann, P., Burghardt, J., Kroppenstedt, R.M., and Stackebrandt, E. 1995. Transfer of Arthrobacter picolinophilus Tate and Ensign 1974 to Rhodococcus erythropolis. Int. J. Syst. Bacteriol. 45: 576-577.
29. AL. In Bergey's manual of systematic bacteriology. Vol. 2. Edited by P.H.A. Sneath, N.S. Mair, M.E. Sharpe, and J.G. Holt. Williams & Wilkins, Baltimore. pp. 1313-1317.
30. Kroppenstedt, R.M. 1985. Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical methods in bacterial systematics. Edited by M. Goodfellow and D.E. Minnikin. Academic Press, London. pp. 173-199.
31. Kroppenstedt, R.M., Stackebrandt, E., and Goodfellow, M. 1990. Taxonomic revision of the actinomycete genera Actinomadura and Microtetraspora. Syst. Appl. Microbiol. 13: 148-161.
32. Kuykendall, L.D., Roy, M.A., ONeill, J.J., and Devine, T.E. 1988. Fatty acids, antibiotic resistance, and deoxyribonucleic acid homology groups of Bradyrhizobium japonicum. Int. J. Syst. Bacteriol. 38: 358-361.
33. Lechevalier, M.P., and Ledievalier, H.A. 1970. Chemical composition as a criterion in the classification of aerobic actinomycetes. Int. J. Syst. Bacteriol. 20: 435-443.
34. Lechevalier, M.P., and Lechevalier, H.A. 1980. The chemotaxonomy of actinomycetes. In Actinomycete taxonomy. Edited by A. Dietz and D.W. Thayer. Society for Industrial Microbiology Special Publication, Arlington. pp. 227-291.
35. Lechevalier, M.P., Debievre, C., and Lechevalier, H.A. 1977. Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem. Syst. Ecol. 5: 249-260.
36. T to Corynebacterium glutamicum and their distinction by rRNA gene restriction patterns. Int. J. Syst. Bacteriol. 41: 255-260.
37. Miller, L.T. 1982. A single derivatization method for bacterial fatty acid methyl esters including hydroxy acids. J. Clin. Microbiol. 16: 584-586.
38. Minnikin, D.E., Goodfellow, M., and Collins, M.D. 1978. Lipid composition in the classification and identification of coryneform and related taxa. In Coryneform bacteria. Edited by I.J. Bousfield and A.G. Callely. Academic Press, London, New York. pp. 85-160.
39. Park, Y.-H., Hori, H., Suzuki, K.-I., Osawa, S., and Komagata, K. 1987. Phylogenetic analysis of the coryneform bacteria by 5S rRNA sequences. J. Bacteriol. 169: 1801-1806.
40. Pascual, C,. Lawson, P.A., Farrow, J.A.E., Gimenez, M.N., and Collins, M.D. 1995. Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences. Int. J. Syst. Bacteriol. 45: 724-728.
41. Rainey, F., Weiss, N., Prauser, H., and Stackebrandt, E. 1994. Further evidence for the phylogenetic coherence of actinomycetes with group B-peptidiglyean and evidence for the phylogenetic intermixing of the genera Microbacterium and Aureobacterium as determined by 16S rDNA analysis. FEMS Microb. Lett. 118: 135-140.
42. Riley, I.T., Reardon, T.B., and McKay, A.C. 1988. Genetic analysis of plant pathogenic bacteria in the genus Clavibacter using allozyme electrophoresis. J. Gen. Microbiol. 134: 3025-3030.
43. Ruimy, R., Riegel, P., Boiron, P., Monteil, H., and Christen, R. 1995. Phylogeny of the genus Corynebacterium deduced from analysis of small-subunit ribosomal DNA sequences. Int. J. Syst. Bacteriol. 45: 740-746.
44. Schleifer, K.-H., and Kandler, O. 1972. Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol. Rev. 36: 407-477.
45. Schleifer, K.-H., and Stackebrandt, E. 1983. Molecular systematics of prokaryotes. Annu. Rev. Microbiol. 37: 143-187.
46. Seiler, H. 1983. Identification key for coryneform bacteria derived from numerical taxonomic studies. J. Gen. Microbiol. 129: 1433-1471.
47. Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. 1980. Approved lists of bacterial names. Int. J. Syst. Bacteriol. 30: 225-420.
48. Stackebrandt, E. 1986. The significance of "wall types" in phylogenetically based taxonomic studies on actinomycetes. In biological, biochemical and biomedical aspects of actinomycetes. Part B. Edited by G. Szabo, S. Biro, and M. Goodfellow. Academiai Kiado, Budapest. pp. 497-506.
49. Stackebrandt, E. 1992. Unifying phylogeny and phenotypic diversity. In the prokaryotes. 2nd ed. Vol. 1. Edited by A. Balows, H.G. Trüper, M. Dworkin, W. Harder, and K.-H. Schleifer. Springer Verlag, Berlin. pp. 19-47.
50. AL. In Bergey's manual of systematic bacteriology. Vol 2. Edited by P.H.A. Sneath, N.S. Mair, M.E. Sharpe, and J.G. Holt. Williams and Wilkins, Baltimore, pp. 1325-1329.
51. Stackebrandt, E., and Prauser, H. 1992. The Family Cellulomonadaceae. In The prokaryotes. 2nd ed. Vol. 1. Edited by A. Balows, H.G. Trüper, M. Dworkin, W. Harder, and K. H. Schleifer. Springer Verlag, New York. pp. 1323-1345.
52. Stackebrandt, E., Lewis, B.J., and Woese, C.R. 1980. The phylogenetic structure of the coryneform group of bacteria. Zentralbl. Bakteriol. Mikrobiol. Hyg. I. Abt., Orig. C, 1: 137-149.
53. Starr, M.P., Mandel, M., and Murata, N. 1975. The phytopathogenic coryneform bacteria in the light of DNA base composition and DNA-DNA segmental homology. J. Gen. Appl. Microbiol. 21: 13-26.
54. Stead, D.E. 1992. Grouping of plant-pathogenic and some other Pseudomonas spp. by using cellular fatty acid profiles. Int. J. Syst. Bacteriol. 42: 281-295.
55. Suzuki, K., and Komagata, K. 1983. Taxonomic significance of cellular fatty acid composition in some coryneform bacteria. Int. J. Syst. Bacteriol. 33: 188-200.
56. Suzuki, K., Kaneko, T., and Komagata, K. 1981. Deoxyribonucleic acid homologies among coryneform bacteria. Int. J. Syst. Bacteriol. 31: 131-138.
57. Takeuchi, M., and Yokota, A. 1994. Phylogenetic analysis of the genus Microbacterium based on 16S rRNA gene sequences. FEMS Microbiol. Lett. 124: 11-16.