-
1
-
-
0016368635
-
Protein model refinement based on X-ray data
-
Jensen L.H. Protein model refinement based on X-ray data. Annu Rev Biophys Bioeng 1974, 3:81-93.
-
(1974)
Annu Rev Biophys Bioeng
, vol.3
, pp. 81-93
-
-
Jensen, L.H.1
-
2
-
-
0033152783
-
Expanding the model: anisotropic displacement parameters in protein structure refinement
-
Merritt E.A. Expanding the model: anisotropic displacement parameters in protein structure refinement. Acta Crystallogr D Biol Crystallogr 1999, 55:1109-1117.
-
(1999)
Acta Crystallogr D Biol Crystallogr
, vol.55
, pp. 1109-1117
-
-
Merritt, E.A.1
-
3
-
-
0019209443
-
Structure and refinement of oxymyoglobin at 1.6Å resolution
-
Phillips S.E. Structure and refinement of oxymyoglobin at 1.6Å resolution. J Mol Biol 1980, 142:531-554.
-
(1980)
J Mol Biol
, vol.142
, pp. 531-554
-
-
Phillips, S.E.1
-
4
-
-
0023045518
-
Structural heterogeneity in protein crystals
-
Smith J.L., Hendrickson W.A., Honzatko R.B., Sheriff S. Structural heterogeneity in protein crystals. Biochemistry 1986, 25:5018-5027.
-
(1986)
Biochemistry
, vol.25
, pp. 5018-5027
-
-
Smith, J.L.1
Hendrickson, W.A.2
Honzatko, R.B.3
Sheriff, S.4
-
5
-
-
0023053635
-
Effect of anisotropy and anharmonicity on protein crystallographic refinement. An evaluation by molecular dynamics
-
Kuriyan J., Petsko G.A., Levy R.M., Karplus M. Effect of anisotropy and anharmonicity on protein crystallographic refinement. An evaluation by molecular dynamics. J Mol Biol 1986, 190:227-254.
-
(1986)
J Mol Biol
, vol.190
, pp. 227-254
-
-
Kuriyan, J.1
Petsko, G.A.2
Levy, R.M.3
Karplus, M.4
-
6
-
-
0036499648
-
Why protein R-factors are so large: a self-consistent analysis
-
Vitkup D., Ringe D., Karplus M., Petsko G.A. Why protein R-factors are so large: a self-consistent analysis. Proteins 2002, 46:345-354.
-
(2002)
Proteins
, vol.46
, pp. 345-354
-
-
Vitkup, D.1
Ringe, D.2
Karplus, M.3
Petsko, G.A.4
-
7
-
-
84905663986
-
X-ray refinement significantly underestimates the level of microscopic heterogeneity in biomolecular crystals
-
Kuzmanic A., Pannu N.S., Zagrovic B. X-ray refinement significantly underestimates the level of microscopic heterogeneity in biomolecular crystals. Nat Commun 2014, 5:3220.
-
(2014)
Nat Commun
, vol.5
, pp. 3220
-
-
Kuzmanic, A.1
Pannu, N.S.2
Zagrovic, B.3
-
8
-
-
77949535720
-
Features and development of Coot
-
Emsley P., Lohkamp B., Scott W.G., Cowtan K. Features and development of Coot. Acta Crystallogr D Biol Crystallogr 2010, 66:486-501.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 486-501
-
-
Emsley, P.1
Lohkamp, B.2
Scott, W.G.3
Cowtan, K.4
-
9
-
-
20444435002
-
Interactive visualization of electron density slices
-
Maia F.R.N.C., DeLano W., Szöke A., Van Der Spoel D. Interactive visualization of electron density slices. J Appl Crystallogr 2005, 38:563-565.
-
(2005)
J Appl Crystallogr
, vol.38
, pp. 563-565
-
-
Maia, F.R.N.C.1
DeLano, W.2
Szöke, A.3
Van Der Spoel, D.4
-
10
-
-
84905651454
-
FEM: feature enhanced maps
-
Afonine P.V. FEM: feature enhanced maps. Comput Crystallogr Newslett 2013, 4(2):28-29.
-
(2013)
Comput Crystallogr Newslett
, vol.4
, Issue.2
, pp. 28-29
-
-
Afonine, P.V.1
-
11
-
-
0034512018
-
GraphEnt: a maximum-entropy program with graphics capabilities
-
Glykos N.M., Kokkinidis M. GraphEnt: a maximum-entropy program with graphics capabilities. J Appl Crystallogr 2000, 33:982-985.
-
(2000)
J Appl Crystallogr
, vol.33
, pp. 982-985
-
-
Glykos, N.M.1
Kokkinidis, M.2
-
12
-
-
84893662498
-
Electron density sharpening as a general technique in crystallographic studies
-
Liu C., Xiong Y. Electron density sharpening as a general technique in crystallographic studies. J Mol Biol 2014, 426:980-993.
-
(2014)
J Mol Biol
, vol.426
, pp. 980-993
-
-
Liu, C.1
Xiong, Y.2
-
13
-
-
33846011887
-
Statistical and conformational analysis of the electron density of protein side chains
-
Shapovalov M.V., Dunbrack R.L. Statistical and conformational analysis of the electron density of protein side chains. Proteins 2007, 66:279-303.
-
(2007)
Proteins
, vol.66
, pp. 279-303
-
-
Shapovalov, M.V.1
Dunbrack, R.L.2
-
14
-
-
77953977241
-
Automated electron-density sampling reveals widespread conformational polymorphism in proteins
-
Lang P.T., Ng H.L., Fraser J.S., Corn J.E., Echols N., Sales M., Holton J.M., Alber T. Automated electron-density sampling reveals widespread conformational polymorphism in proteins. Protein Sci 2010, 19:1420-1431.
-
(2010)
Protein Sci
, vol.19
, pp. 1420-1431
-
-
Lang, P.T.1
Ng, H.L.2
Fraser, J.S.3
Corn, J.E.4
Echols, N.5
Sales, M.6
Holton, J.M.7
Alber, T.8
-
15
-
-
84891915215
-
Protein structural ensembles are revealed by redefining X-ray electron density noise
-
Lang P.T., Holton J.M., Fraser J.S., Alber T. Protein structural ensembles are revealed by redefining X-ray electron density noise. Proc Natl Acad Sci U S A 2014, 111:237-242.
-
(2014)
Proc Natl Acad Sci U S A
, vol.111
, pp. 237-242
-
-
Lang, P.T.1
Holton, J.M.2
Fraser, J.S.3
Alber, T.4
-
16
-
-
0001645813
-
Phase improvement by multi-start simulated annealing refinement and structure-factor averaging
-
Rice L.M., Shamoo Y., Brünger A.T. Phase improvement by multi-start simulated annealing refinement and structure-factor averaging. J Appl Crystallogr 1998, 31:798-805.
-
(1998)
J Appl Crystallogr
, vol.31
, pp. 798-805
-
-
Rice, L.M.1
Shamoo, Y.2
Brünger, A.T.3
-
17
-
-
70849098012
-
Multistart simulated annealing refinement of the crystal structure of the 70S ribosome
-
Korostelev A., Laurberg M., Noller H.F. Multistart simulated annealing refinement of the crystal structure of the 70S ribosome. Proc Natl Acad Sci U S A 2009, 106:18195-18200.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 18195-18200
-
-
Korostelev, A.1
Laurberg, M.2
Noller, H.F.3
-
18
-
-
78049444154
-
Evidence of functional protein dynamics from X-ray crystallographic ensembles
-
Kohn J.E., Afonine P.V., Ruscio J.Z., Adams P.D., Head-Gordon T. Evidence of functional protein dynamics from X-ray crystallographic ensembles. PLoS Comput Biol 2010, 6.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Kohn, J.E.1
Afonine, P.V.2
Ruscio, J.Z.3
Adams, P.D.4
Head-Gordon, T.5
-
19
-
-
84887410762
-
Improved crystallographic structures using extensive combinatorial refinement
-
Nwachukwu J.C., Southern M.R., Kiefer J.R., Afonine P.V., Adams P.D., Terwilliger T.C., Nettles K.W. Improved crystallographic structures using extensive combinatorial refinement. Structure 2013, 21:1923-1930.
-
(2013)
Structure
, vol.21
, pp. 1923-1930
-
-
Nwachukwu, J.C.1
Southern, M.R.2
Kiefer, J.R.3
Afonine, P.V.4
Adams, P.D.5
Terwilliger, T.C.6
Nettles, K.W.7
-
20
-
-
41949094080
-
Exploring structural variability in X-ray crystallographic models using protein local optimization by torsion-angle sampling
-
Knight J.L., Zhou Z., Gallicchio E., Himmel D.M., Friesner R.A., Arnold E., Levy R.M. Exploring structural variability in X-ray crystallographic models using protein local optimization by torsion-angle sampling. Acta Crystallogr D Biol Crystallogr 2008, 64:383-396.
-
(2008)
Acta Crystallogr D Biol Crystallogr
, vol.64
, pp. 383-396
-
-
Knight, J.L.1
Zhou, Z.2
Gallicchio, E.3
Himmel, D.M.4
Friesner, R.A.5
Arnold, E.6
Levy, R.M.7
-
21
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis A., Morris R., Lamzin V.S. Automated protein model building combined with iterative structure refinement. Nat Struct Biol 1999, 6:458-463.
-
(1999)
Nat Struct Biol
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
22
-
-
24344474463
-
Crystallographic refinement by knowledge-based exploration of complex energy landscapes
-
Depristo M.A., de Bakker P.I., Johnson R.J., Blundell T.L. Crystallographic refinement by knowledge-based exploration of complex energy landscapes. Structure 2005, 13:1311-1319.
-
(2005)
Structure
, vol.13
, pp. 1311-1319
-
-
Depristo, M.A.1
de Bakker, P.I.2
Johnson, R.J.3
Blundell, T.L.4
-
23
-
-
37349103121
-
Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard
-
Terwilliger T.C., Grosse-Kunstleve R.W., Afonine P.V., Moriarty N.W., Zwart P.H., Hung L.W., Read R.J., Adams P.D. Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard. Acta Crystallogr D Biol Crystallogr 2008, 64:61-69.
-
(2008)
Acta Crystallogr D Biol Crystallogr
, vol.64
, pp. 61-69
-
-
Terwilliger, T.C.1
Grosse-Kunstleve, R.W.2
Afonine, P.V.3
Moriarty, N.W.4
Zwart, P.H.5
Hung, L.W.6
Read, R.J.7
Adams, P.D.8
-
24
-
-
33644807131
-
Is one solution good enough?
-
discussion 185
-
Furnham N., Blundell T.L., DePristo M.A., Terwilliger T.C. Is one solution good enough?. Nat Struct Mol Biol 2006, 13:184-185. discussion 185.
-
(2006)
Nat Struct Mol Biol
, vol.13
, pp. 184-185
-
-
Furnham, N.1
Blundell, T.L.2
DePristo, M.A.3
Terwilliger, T.C.4
-
25
-
-
34247495231
-
Interpretation of ensembles created by multiple iterative rebuilding of macromolecular models
-
Terwilliger T.C., Grosse-Kunstleve R.W., Afonine P.V., Adams P.D., Moriarty N.W., Zwart P., Read R.J., Turk D., Hung L.W. Interpretation of ensembles created by multiple iterative rebuilding of macromolecular models. Acta Crystallogr D Biol Crystallogr 2007, 63:597-610.
-
(2007)
Acta Crystallogr D Biol Crystallogr
, vol.63
, pp. 597-610
-
-
Terwilliger, T.C.1
Grosse-Kunstleve, R.W.2
Afonine, P.V.3
Adams, P.D.4
Moriarty, N.W.5
Zwart, P.6
Read, R.J.7
Turk, D.8
Hung, L.W.9
-
26
-
-
0025943869
-
Exploration of disorder in protein structures by X-ray restrained molecular dynamics
-
Kuriyan J., Osapay K., Burley S.K., Brunger A.T., Hendrickson W.A., Karplus M. Exploration of disorder in protein structures by X-ray restrained molecular dynamics. Proteins 1991, 10:340-358.
-
(1991)
Proteins
, vol.10
, pp. 340-358
-
-
Kuriyan, J.1
Osapay, K.2
Burley, S.K.3
Brunger, A.T.4
Hendrickson, W.A.5
Karplus, M.6
-
27
-
-
0030877587
-
Conformational substates in enzyme mechanism: the 120 K structure of alpha-lytic protease at 1.5Å resolution
-
Rader S.D., Agard D.A. Conformational substates in enzyme mechanism: the 120 K structure of alpha-lytic protease at 1.5Å resolution. Protein Sci 1997, 6:1375-1386.
-
(1997)
Protein Sci
, vol.6
, pp. 1375-1386
-
-
Rader, S.D.1
Agard, D.A.2
-
28
-
-
0030038545
-
Direct observation of protein solvation and discrete disorder with experimental crystallographic phases
-
Burling F.T., Weis W.I., Flaherty K.M., Brunger A.T. Direct observation of protein solvation and discrete disorder with experimental crystallographic phases. Science 1996, 271:72-77.
-
(1996)
Science
, vol.271
, pp. 72-77
-
-
Burling, F.T.1
Weis, W.I.2
Flaherty, K.M.3
Brunger, A.T.4
-
29
-
-
0034257929
-
2+-bound calmodulin: an analysis of disorder and implications for functionally relevant plasticity
-
2+-bound calmodulin: an analysis of disorder and implications for functionally relevant plasticity. J Mol Biol 2000, 301:1237-1256.
-
(2000)
J Mol Biol
, vol.301
, pp. 1237-1256
-
-
Wilson, M.A.1
Brunger, A.T.2
-
30
-
-
0030694290
-
Highly constrained multiple-copy refinement of protein crystal structures
-
Pellegrini M., Gronbech-Jensen N., Kelly J.A., Pfluegl G.M., Yeates T.O. Highly constrained multiple-copy refinement of protein crystal structures. Proteins 1997, 29:426-432.
-
(1997)
Proteins
, vol.29
, pp. 426-432
-
-
Pellegrini, M.1
Gronbech-Jensen, N.2
Kelly, J.A.3
Pfluegl, G.M.4
Yeates, T.O.5
-
31
-
-
34548387498
-
Ensemble refinement of protein crystal structures: validation and application
-
Levin E.J., Kondrashov D.A., Wesenberg G.E., Phillips G.N. Ensemble refinement of protein crystal structures: validation and application. Structure 2007, 15:1040-1052.
-
(2007)
Structure
, vol.15
, pp. 1040-1052
-
-
Levin, E.J.1
Kondrashov, D.A.2
Wesenberg, G.E.3
Phillips, G.N.4
-
32
-
-
0025173665
-
Inclusion of thermal motion in crystallographic structures by restrained molecular dynamics
-
Gros P., van Gunsteren W.F., Hol W.G. Inclusion of thermal motion in crystallographic structures by restrained molecular dynamics. Science 1990, 249:1149-1152.
-
(1990)
Science
, vol.249
, pp. 1149-1152
-
-
Gros, P.1
van Gunsteren, W.F.2
Hol, W.G.3
-
33
-
-
0028078188
-
Cross-validation tests of time-averaged molecular dynamics refinements for determination of protein structures by X-ray crystallography
-
Clarage J.B., Phillips G.N. Cross-validation tests of time-averaged molecular dynamics refinements for determination of protein structures by X-ray crystallography. Acta Crystallogr D Biol Crystallogr 1994, 50:24-36.
-
(1994)
Acta Crystallogr D Biol Crystallogr
, vol.50
, pp. 24-36
-
-
Clarage, J.B.1
Phillips, G.N.2
-
34
-
-
0032790344
-
Accessibility and order of water sites in and around proteins: a crystallographic time-averaging study
-
Schiffer C.A., van Gunsteren W.F. Accessibility and order of water sites in and around proteins: a crystallographic time-averaging study. Proteins 1999, 36:501-511.
-
(1999)
Proteins
, vol.36
, pp. 501-511
-
-
Schiffer, C.A.1
van Gunsteren, W.F.2
-
35
-
-
0011181452
-
Time-averaging crystallographic refinement: possibilities and limitations using alpha-cyclodextrin as a test system
-
Schiffer C.A., Gros P., van Gunsteren W.F. Time-averaging crystallographic refinement: possibilities and limitations using alpha-cyclodextrin as a test system. Acta Crystallogr D Biol Crystallogr 1995, 51:85-92.
-
(1995)
Acta Crystallogr D Biol Crystallogr
, vol.51
, pp. 85-92
-
-
Schiffer, C.A.1
Gros, P.2
van Gunsteren, W.F.3
-
36
-
-
0029113863
-
Automatic identification of discrete substates in proteins: singular value decomposition analysis of time-averaged crystallographic refinements
-
Romo T.D., Clarage J.B., Sorensen D.C., Phillips G.N. Automatic identification of discrete substates in proteins: singular value decomposition analysis of time-averaged crystallographic refinements. Proteins 1995, 22:311-321.
-
(1995)
Proteins
, vol.22
, pp. 311-321
-
-
Romo, T.D.1
Clarage, J.B.2
Sorensen, D.C.3
Phillips, G.N.4
-
37
-
-
84908221627
-
Modelling dynamics in protein crystal structures by ensemble refinement
-
Burnley B.T., Afonine P.V., Adams P.D., Gros P. Modelling dynamics in protein crystal structures by ensemble refinement. Elife 2012, 1:e00311.
-
(2012)
Elife
, vol.1
-
-
Burnley, B.T.1
Afonine, P.V.2
Adams, P.D.3
Gros, P.4
-
38
-
-
76449098262
-
PHENIX: a comprehensive Python-based system for macromolecular structure solution
-
Adams P.D., Afonine P.V., Bunkoczi G., Chen V.B., Davis I.W., Echols N., Headd J.J., Hung L.W., Kapral G.J., Grosse-Kunstleve R.W., et al. PHENIX: a comprehensive Python-based system for macromolecular structure solution. Acta Crystallogr D Biol Crystallogr 2010, 66:213-221.
-
(2010)
Acta Crystallogr D Biol Crystallogr
, vol.66
, pp. 213-221
-
-
Adams, P.D.1
Afonine, P.V.2
Bunkoczi, G.3
Chen, V.B.4
Davis, I.W.5
Echols, N.6
Headd, J.J.7
Hung, L.W.8
Kapral, G.J.9
Grosse-Kunstleve, R.W.10
-
39
-
-
33646260450
-
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion
-
Painter J., Merritt E.A. Optimal description of a protein structure in terms of multiple groups undergoing TLS motion. Acta Crystallogr D Biol Crystallogr 2006, 62:439-450.
-
(2006)
Acta Crystallogr D Biol Crystallogr
, vol.62
, pp. 439-450
-
-
Painter, J.1
Merritt, E.A.2
-
40
-
-
34548319255
-
Separating model optimization and model validation in statistical cross-validation as applied to crystallography
-
Kleywegt G.J. Separating model optimization and model validation in statistical cross-validation as applied to crystallography. Acta Crystallogr D Biol Crystallogr 2007, 63:939-940.
-
(2007)
Acta Crystallogr D Biol Crystallogr
, vol.63
, pp. 939-940
-
-
Kleywegt, G.J.1
-
41
-
-
84896753255
-
Ensemble refinement shows conformational flexibility in crystal structures of human complement factor D
-
Forneris F., Burnley B.T., Gros P. Ensemble refinement shows conformational flexibility in crystal structures of human complement factor D. Acta Crystallogr D Biol Crystallogr 2014, 70:733-743.
-
(2014)
Acta Crystallogr D Biol Crystallogr
, vol.70
, pp. 733-743
-
-
Forneris, F.1
Burnley, B.T.2
Gros, P.3
-
42
-
-
70349603852
-
Modeling discrete heterogeneity in X-ray diffraction data by fitting multi-conformers
-
van den Bedem H., Dhanik A., Latombe J.C., Deacon A.M. Modeling discrete heterogeneity in X-ray diffraction data by fitting multi-conformers. Acta Crystallogr D Biol Crystallogr 2009, 65:1107-1117.
-
(2009)
Acta Crystallogr D Biol Crystallogr
, vol.65
, pp. 1107-1117
-
-
van den Bedem, H.1
Dhanik, A.2
Latombe, J.C.3
Deacon, A.M.4
-
43
-
-
84893581945
-
Diffuse X-ray scattering to model protein motions
-
Wall M.E., Adams P.D., Fraser J.S., Sauter N.K. Diffuse X-ray scattering to model protein motions. Structure 2014, 22:182-184.
-
(2014)
Structure
, vol.22
, pp. 182-184
-
-
Wall, M.E.1
Adams, P.D.2
Fraser, J.S.3
Sauter, N.K.4
-
44
-
-
79960700861
-
Dynamics may significantly influence the estimation of interatomic distances in biomolecular X-ray structures
-
Kuzmanic A., Kruschel D., van Gunsteren W.F., Pannu N.S., Zagrovic B. Dynamics may significantly influence the estimation of interatomic distances in biomolecular X-ray structures. J Mol Biol 2011, 411:286-297.
-
(2011)
J Mol Biol
, vol.411
, pp. 286-297
-
-
Kuzmanic, A.1
Kruschel, D.2
van Gunsteren, W.F.3
Pannu, N.S.4
Zagrovic, B.5
-
45
-
-
84883403423
-
Automated identification of functional dynamic contact networks from X-ray crystallography
-
van den Bedem H., Bhabha G., Yang K., Wright P.E., Fraser J.S. Automated identification of functional dynamic contact networks from X-ray crystallography. Nat Methods 2013, 10:896-902.
-
(2013)
Nat Methods
, vol.10
, pp. 896-902
-
-
van den Bedem, H.1
Bhabha, G.2
Yang, K.3
Wright, P.E.4
Fraser, J.S.5
-
46
-
-
0026606219
-
Effects of temperature on protein structure and dynamics: X-ray crystallographic studies of the protein ribonuclease-A at nine different temperatures from 98 to 320 K
-
Tilton R.F., Dewan J.C., Petsko G.A. Effects of temperature on protein structure and dynamics: X-ray crystallographic studies of the protein ribonuclease-A at nine different temperatures from 98 to 320 K. Biochemistry 1992, 31:2469-2481.
-
(1992)
Biochemistry
, vol.31
, pp. 2469-2481
-
-
Tilton, R.F.1
Dewan, J.C.2
Petsko, G.A.3
-
47
-
-
0023652260
-
Thermal expansion of a protein
-
Frauenfelder H., Hartmann H., Karplus M., Kuntz I.D., Kuriyan J., Parak F., Petsko G.A., Ringe D., Tilton R.F., Connolly M.L., et al. Thermal expansion of a protein. Biochemistry 1987, 26:254-261.
-
(1987)
Biochemistry
, vol.26
, pp. 254-261
-
-
Frauenfelder, H.1
Hartmann, H.2
Karplus, M.3
Kuntz, I.D.4
Kuriyan, J.5
Parak, F.6
Petsko, G.A.7
Ringe, D.8
Tilton, R.F.9
Connolly, M.L.10
-
48
-
-
84944510121
-
Cryocrystallography of biological macromolecules: a generally applicable method
-
Hope H. Cryocrystallography of biological macromolecules: a generally applicable method. Acta Crystallogr B 1988, 44:22-26.
-
(1988)
Acta Crystallogr B
, vol.44
, pp. 22-26
-
-
Hope, H.1
-
49
-
-
1842687872
-
Biomolecular cryocrystallography: structural changes during flash-cooling
-
Halle B. Biomolecular cryocrystallography: structural changes during flash-cooling. Proc Natl Acad Sci U S A 2004, 101:4793-4798.
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 4793-4798
-
-
Halle, B.1
-
50
-
-
71449103005
-
Hidden alternative structures of proline isomerase essential for catalysis
-
Fraser J.S., Clarkson M.W., Degnan S.C., Erion R., Kern D., Alber T. Hidden alternative structures of proline isomerase essential for catalysis. Nature 2009, 462:669-673.
-
(2009)
Nature
, vol.462
, pp. 669-673
-
-
Fraser, J.S.1
Clarkson, M.W.2
Degnan, S.C.3
Erion, R.4
Kern, D.5
Alber, T.6
-
51
-
-
80053626537
-
Accessing protein conformational ensembles using room-temperature X-ray crystallography
-
Fraser J.S., van den Bedem H., Samelson A.J., Lang P.T., Holton J.M., Echols N., Alber T. Accessing protein conformational ensembles using room-temperature X-ray crystallography. Proc Natl Acad Sci U S A 2011, 108:16247-16252.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 16247-16252
-
-
Fraser, J.S.1
van den Bedem, H.2
Samelson, A.J.3
Lang, P.T.4
Holton, J.M.5
Echols, N.6
Alber, T.7
-
52
-
-
84890818510
-
Predicting the X-ray lifetime of protein crystals
-
Zeldin O.B., Brockhauser S., Bremridge J., Holton J.M., Garman E.F. Predicting the X-ray lifetime of protein crystals. Proc Natl Acad Sci U S A 2013, 110:20551-20556.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 20551-20556
-
-
Zeldin, O.B.1
Brockhauser, S.2
Bremridge, J.3
Holton, J.M.4
Garman, E.F.5
-
53
-
-
84871402223
-
Global radiation damage: temperature dependence, time dependence and how to outrun it
-
Warkentin M., Hopkins J.B., Badeau R., Mulichak A.M., Keefe L.J., Thorne R.E. Global radiation damage: temperature dependence, time dependence and how to outrun it. J Synchrotr Radiat 2013, 20:7-13.
-
(2013)
J Synchrotr Radiat
, vol.20
, pp. 7-13
-
-
Warkentin, M.1
Hopkins, J.B.2
Badeau, R.3
Mulichak, A.M.4
Keefe, L.J.5
Thorne, R.E.6
-
55
-
-
84890840505
-
Serial femtosecond crystallography of G protein-coupled receptors
-
Liu W., Wacker D., Gati C., Han G.W., James D., Wang D., Nelson G., Weierstall U., Katritch V., Barty A., et al. Serial femtosecond crystallography of G protein-coupled receptors. Science 2013, 342:1521-1524.
-
(2013)
Science
, vol.342
, pp. 1521-1524
-
-
Liu, W.1
Wacker, D.2
Gati, C.3
Han, G.W.4
James, D.5
Wang, D.6
Nelson, G.7
Weierstall, U.8
Katritch, V.9
Barty, A.10
-
56
-
-
84867743209
-
Time-resolved structural studies at synchrotrons and X-ray free electron lasers: opportunities and challenges
-
Neutze R., Moffat K. Time-resolved structural studies at synchrotrons and X-ray free electron lasers: opportunities and challenges. Curr Opin Struct Biol 2012, 22:651-659.
-
(2012)
Curr Opin Struct Biol
, vol.22
, pp. 651-659
-
-
Neutze, R.1
Moffat, K.2
-
57
-
-
84894037590
-
Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography
-
Weierstall U., James D., Wang C., White T.A., Wang D., Liu W., Spence J.C., Bruce Doak R., Nelson G., Fromme P., et al. Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography. Nat Commun 2014, 5:3309.
-
(2014)
Nat Commun
, vol.5
, pp. 3309
-
-
Weierstall, U.1
James, D.2
Wang, C.3
White, T.A.4
Wang, D.5
Liu, W.6
Spence, J.C.7
Bruce Doak, R.8
Nelson, G.9
Fromme, P.10
-
58
-
-
84863010963
-
Time-resolved protein nanocrystallography using an X-ray free-electron laser
-
Aquila A., Hunter M.S., Doak R.B., Kirian R.A., Fromme P., White T.A., Andreasson J., Arnlund D., Bajt S., Barends T.R., et al. Time-resolved protein nanocrystallography using an X-ray free-electron laser. Opt Express 2012, 20:2706-2716.
-
(2012)
Opt Express
, vol.20
, pp. 2706-2716
-
-
Aquila, A.1
Hunter, M.S.2
Doak, R.B.3
Kirian, R.A.4
Fromme, P.5
White, T.A.6
Andreasson, J.7
Arnlund, D.8
Bajt, S.9
Barends, T.R.10
-
59
-
-
84899967527
-
Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers
-
Hattne J., Echols N., Tran R., Kern J., Gildea R.J., Brewster A.S., Alonso-Mori R., Glockner C., Hellmich J., Laksmono H., et al. Accurate macromolecular structures using minimal measurements from X-ray free-electron lasers. Nat Methods 2014.
-
(2014)
Nat Methods
-
-
Hattne, J.1
Echols, N.2
Tran, R.3
Kern, J.4
Gildea, R.J.5
Brewster, A.S.6
Alonso-Mori, R.7
Glockner, C.8
Hellmich, J.9
Laksmono, H.10
-
61
-
-
84898716092
-
Simultaneous use of solution NMR and X-ray data in REFMAC5 for joint refinement/detection of structural differences
-
Rinaldelli M., Ravera E., Calderone V., Parigi G., Murshudov G.N., Luchinat C. Simultaneous use of solution NMR and X-ray data in REFMAC5 for joint refinement/detection of structural differences. Acta Crystallogr D Biol Crystallogr 2014, 70:958-967.
-
(2014)
Acta Crystallogr D Biol Crystallogr
, vol.70
, pp. 958-967
-
-
Rinaldelli, M.1
Ravera, E.2
Calderone, V.3
Parigi, G.4
Murshudov, G.N.5
Luchinat, C.6
-
62
-
-
33745652451
-
Time-dependent atomic coordinates for the dissociation of carbon monoxide from myoglobin
-
Aranda Rt, Levin E.J., Schotte F., Anfinrud P.A., Phillips G.N. Time-dependent atomic coordinates for the dissociation of carbon monoxide from myoglobin. Acta Crystallogr D Biol Crystallogr 2006, 62:776-783.
-
(2006)
Acta Crystallogr D Biol Crystallogr
, vol.62
, pp. 776-783
-
-
Aranda, R.1
Levin, E.J.2
Schotte, F.3
Anfinrud, P.A.4
Phillips, G.N.5
-
63
-
-
21044432995
-
Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds
-
Ihee H., Rajagopal S., Srajer V., Pahl R., Anderson S., Schmidt M., Schotte F., Anfinrud P.A., Wulff M., Moffat K. Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds. Proc Natl Acad Sci U S A 2005, 102:7145-7150.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 7145-7150
-
-
Ihee, H.1
Rajagopal, S.2
Srajer, V.3
Pahl, R.4
Anderson, S.5
Schmidt, M.6
Schotte, F.7
Anfinrud, P.A.8
Wulff, M.9
Moffat, K.10
-
64
-
-
0025275582
-
Time-resolved X-ray crystallographic study of the conformational change in Ha-Ras p21 protein on GTP hydrolysis
-
Schlichting I., Almo S.C., Rapp G., Wilson K., Petratos K., Lentfer A., Wittinghofer A., Kabsch W., Pai E.F., Petsko G.A., et al. Time-resolved X-ray crystallographic study of the conformational change in Ha-Ras p21 protein on GTP hydrolysis. Nature 1990, 345:309-315.
-
(1990)
Nature
, vol.345
, pp. 309-315
-
-
Schlichting, I.1
Almo, S.C.2
Rapp, G.3
Wilson, K.4
Petratos, K.5
Lentfer, A.6
Wittinghofer, A.7
Kabsch, W.8
Pai, E.F.9
Petsko, G.A.10
-
65
-
-
0037388383
-
Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations
-
Johnson S.J., Taylor J.S., Beese L.S. Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations. Proc Natl Acad Sci U S A 2003, 100:3895-3900.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 3895-3900
-
-
Johnson, S.J.1
Taylor, J.S.2
Beese, L.S.3
-
66
-
-
84880008208
-
Complete integrin headpiece opening in eight steps
-
Zhu J., Zhu J., Springer T.A. Complete integrin headpiece opening in eight steps. J Cell Biol 2013, 201:1053-1068.
-
(2013)
J Cell Biol
, vol.201
, pp. 1053-1068
-
-
Zhu, J.1
Zhu, J.2
Springer, T.A.3
|