-
1
-
-
50049126125
-
Resistance, resilience, and redundancy in microbial communities
-
Allison, S.D., and Martiny, J.B.H. (2008) Resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci USA 105: 11512-11519.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 11512-11519
-
-
Allison, S.D.1
Martiny, J.B.H.2
-
2
-
-
24144447031
-
The contribution of species richness and composition to bacterial services
-
Bell, T., Newman, J.A., Silverman, B.W., Turner, S.L., and Lilley, A.K. (2005) The contribution of species richness and composition to bacterial services. Nature 436: 1157-1160.
-
(2005)
Nature
, vol.436
, pp. 1157-1160
-
-
Bell, T.1
Newman, J.A.2
Silverman, B.W.3
Turner, S.L.4
Lilley, A.K.5
-
3
-
-
84868382773
-
Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure
-
Berg, J., Brandt, K.K., Al-Soud, W.A., Holm, P.E., Hansen, L.H., Sorensen, S.J., etal. (2012) Selection for Cu-tolerant bacterial communities with altered composition, but unaltered richness, via long-term Cu exposure. Appl Environ Microbiol 78: 7438-7446.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 7438-7446
-
-
Berg, J.1
Brandt, K.K.2
Al-Soud, W.A.3
Holm, P.E.4
Hansen, L.H.5
Sorensen, S.J.6
-
4
-
-
84905388891
-
-
Prioritising biological indicators of soil quality for deployment in a national-scale soil monitoring scheme. In: Defra Final Contract Report.
-
Black, H.I.J., Ritz, K., Campbell, C.D., Harris, J.A., Wood, C., Chamberlain, P.M., etal. (2008). Prioritising biological indicators of soil quality for deployment in a national-scale soil monitoring scheme. In: Defra Final Contract Report. http://nora.nerc.ac.uk/8108/
-
(2008)
-
-
Black, H.I.J.1
Ritz, K.2
Campbell, C.D.3
Harris, J.A.4
Wood, C.5
Chamberlain, P.M.6
-
5
-
-
84905392542
-
-
Scoping biological indicators of soil quality, Phase II. In: Defra Final Contract Report SP0534.
-
Black, H.I.J., Ritz, K., Harris, J.A., Cameron, C., Campbell, C.D., Chamberlain, P.M., etal. (2011). Scoping biological indicators of soil quality, Phase II. In: Defra Final Contract Report SP0534.
-
(2011)
-
-
Black, H.I.J.1
Ritz, K.2
Harris, J.A.3
Cameron, C.4
Campbell, C.D.5
Chamberlain, P.M.6
-
6
-
-
0038315527
-
A rapid microtiter plate method to measure carbon dioxide evolved from carbon substrate amendments so as to determine the physiological profiles of soil microbial communities by using whole soil
-
Campbell, C.D., Chapman, S.J., Cameron, C.M., Davidson, M.S., and Potts, J.M. (2003) A rapid microtiter plate method to measure carbon dioxide evolved from carbon substrate amendments so as to determine the physiological profiles of soil microbial communities by using whole soil. Appl Environ Microbiol 69: 3593-3599.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 3593-3599
-
-
Campbell, C.D.1
Chapman, S.J.2
Cameron, C.M.3
Davidson, M.S.4
Potts, J.M.5
-
7
-
-
77957888370
-
Stopping rules and estimations for recapture debugging with unequal failure rates
-
Chao, A., Ma, M.C., and Yang, M.C.K. (1993) Stopping rules and estimations for recapture debugging with unequal failure rates. Biometrika 80: 193-201.
-
(1993)
Biometrika
, vol.80
, pp. 193-201
-
-
Chao, A.1
Ma, M.C.2
Yang, M.C.K.3
-
8
-
-
45049085936
-
Population size of indigenous Rhizobium leguminosarum biovar trifolii in long-term field experiments with sewage sludge cake, metal-amended liquid sludge or metal salts: Effects of zinc, copper and cadmium
-
Chaudri, A., McGrath, S., Gibbs, P., Chambers, B., Carlton-Smith, C., Bacon, J., etal. (2008) Population size of indigenous Rhizobium leguminosarum biovar trifolii in long-term field experiments with sewage sludge cake, metal-amended liquid sludge or metal salts: Effects of zinc, copper and cadmium. Soil Biol Biochem 40: 1670-1680.
-
(2008)
Soil Biol Biochem
, vol.40
, pp. 1670-1680
-
-
Chaudri, A.1
McGrath, S.2
Gibbs, P.3
Chambers, B.4
Carlton-Smith, C.5
Bacon, J.6
-
9
-
-
73949141766
-
Cryptic microbial communities in Antarctic deserts
-
Cowan, D.A. (2009) Cryptic microbial communities in Antarctic deserts. Proc Natl Acad Sci USA 106: 19749-19750.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 19749-19750
-
-
Cowan, D.A.1
-
10
-
-
84863602579
-
Microbial diversity affects self-organisation of soil-microbe systems with consequences for functions
-
Crawford, J.W., Deacon, L., Grinev, D., Harris, J.A., Ritz, K., Singh, B.K., and Young, I. (2012) Microbial diversity affects self-organisation of soil-microbe systems with consequences for functions. J R Soc Interface 9: 1302-1310.
-
(2012)
J R Soc Interface
, vol.9
, pp. 1302-1310
-
-
Crawford, J.W.1
Deacon, L.2
Grinev, D.3
Harris, J.A.4
Ritz, K.5
Singh, B.K.6
Young, I.7
-
11
-
-
31544483932
-
Community genomics among stratified microbial assemblages in the ocean's interior
-
DeLong, E.F., Preston, C.M., Mincer, T., Rich, V., Hallam, S.J., Frigaard, N.U., etal. (2006) Community genomics among stratified microbial assemblages in the ocean's interior. Science 311: 496-503.
-
(2006)
Science
, vol.311
, pp. 496-503
-
-
DeLong, E.F.1
Preston, C.M.2
Mincer, T.3
Rich, V.4
Hallam, S.J.5
Frigaard, N.U.6
-
12
-
-
41649109613
-
Functional metagenomic profiling of nine biomes
-
629-6U8
-
Dinsdale, E.A., Edwards, R.A., Hall, D., Angly, F., Breitbart, M., Brulc, J.M., etal. (2008) Functional metagenomic profiling of nine biomes. Nature 452: 629-U8.
-
(2008)
Nature
, vol.452
-
-
Dinsdale, E.A.1
Edwards, R.A.2
Hall, D.3
Angly, F.4
Breitbart, M.5
Brulc, J.M.6
-
13
-
-
84865733148
-
Infering correlation networks from genomic survey data
-
Friedman, J., and Alm, E.J. (2012) Infering correlation networks from genomic survey data. PLOS Comput Biol 8: e1002687.
-
(2012)
PLOS Comput Biol
, vol.8
-
-
Friedman, J.1
Alm, E.J.2
-
14
-
-
76049126745
-
Ecology of the rare microbial biosphere of the Arctic Ocean
-
Galand, P.E., Casamayor, E.O., Kirchman, D.L., and Lovejoy, C. (2009) Ecology of the rare microbial biosphere of the Arctic Ocean. Proc Natl Acad Sci USA 106: 22427-22432.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 22427-22432
-
-
Galand, P.E.1
Casamayor, E.O.2
Kirchman, D.L.3
Lovejoy, C.4
-
15
-
-
23944525404
-
Computational improvements reveal great bacterial diversity and high metal toxicity in soil
-
Gans, J., Wolinsky, M., and Dunbar, J. (2005) Computational improvements reveal great bacterial diversity and high metal toxicity in soil. Science 309: 1387-1390.
-
(2005)
Science
, vol.309
, pp. 1387-1390
-
-
Gans, J.1
Wolinsky, M.2
Dunbar, J.3
-
16
-
-
33644787034
-
Initial results from a long-term, multi-site field study of the effects on soil fertility and microbial activity of sludge cakes containing heavy metals
-
Gibbs, P.A., Chambers, B.J., Chaudri, A.M., McGrath, S.P., Carlton-Smith, C.H., Bacon, J.R., etal. (2006) Initial results from a long-term, multi-site field study of the effects on soil fertility and microbial activity of sludge cakes containing heavy metals. Soil Use Manag 22: 11-21.
-
(2006)
Soil Use Manag
, vol.22
, pp. 11-21
-
-
Gibbs, P.A.1
Chambers, B.J.2
Chaudri, A.M.3
McGrath, S.P.4
Carlton-Smith, C.H.5
Bacon, J.R.6
-
17
-
-
70249100957
-
Heavy metals and soil microbes
-
Giller, K.E., Witter, E., and McGrath, S.P. (2009) Heavy metals and soil microbes. Soil Biol Biochem 41: 2031-2037.
-
(2009)
Soil Biol Biochem
, vol.41
, pp. 2031-2037
-
-
Giller, K.E.1
Witter, E.2
McGrath, S.P.3
-
18
-
-
14344260968
-
Bacterial diversity promotes community stability and functional resilience after perturbation
-
2005.
-
Girvan, M.S., Campbell, C.D., Killham, K., Prosser, J.I., and Glover, L.A. (2005) Bacterial diversity promotes community stability and functional resilience after perturbation. Environ Microbiol 7: 301-313, 2005.
-
(2005)
Environ Microbiol
, vol.7
, pp. 301-313
-
-
Girvan, M.S.1
Campbell, C.D.2
Killham, K.3
Prosser, J.I.4
Glover, L.A.5
-
19
-
-
84855518132
-
Niche specialization of terrestrial archaeal ammonia oxidizers
-
Gubry-Rangin, C., Hai, B., Quince, C., Engel, M., Thomson, B.C., James, P., etal. (2011) Niche specialization of terrestrial archaeal ammonia oxidizers. Proc Natl Acad Sci USA 108: 21206-21211.
-
(2011)
Proc Natl Acad Sci USA
, vol.108
, pp. 21206-21211
-
-
Gubry-Rangin, C.1
Hai, B.2
Quince, C.3
Engel, M.4
Thomson, B.C.5
James, P.6
-
20
-
-
77956094278
-
GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity
-
He, Z., Deng, Y., Van Nostrand, J.D., Tu, Q., Xu, M., Hemme, C.L., etal. (2010) GeoChip 3.0 as a high-throughput tool for analyzing microbial community composition, structure and functional activity. ISME J 4: 1167-1179.
-
(2010)
ISME J
, vol.4
, pp. 1167-1179
-
-
He, Z.1
Deng, Y.2
Van Nostrand, J.D.3
Tu, Q.4
Xu, M.5
Hemme, C.L.6
-
21
-
-
77951499585
-
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community
-
Hemme, C.L., Deng, Y., Gentry, T.J., Fields, M.W., Wu, L., Barua, S., etal. (2010) Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community. ISME J 4: 660-672.
-
(2010)
ISME J
, vol.4
, pp. 660-672
-
-
Hemme, C.L.1
Deng, Y.2
Gentry, T.J.3
Fields, M.W.4
Wu, L.5
Barua, S.6
-
22
-
-
30444458666
-
Predicting microbial species richness
-
Hong, S.H., Bunge, J., Jeon, S.O., and Epstein, S.S. (2006) Predicting microbial species richness. Proc Natl Acad Sci USA 103: 117-122.
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 117-122
-
-
Hong, S.H.1
Bunge, J.2
Jeon, S.O.3
Epstein, S.S.4
-
23
-
-
34447504803
-
Long-term exposure to Zn-spiked sewage sludge alters soil community structure
-
Macdonald, C.A., Singh, B.K., Peck, J.A., van Schaik, A.P., Hunter, L.C., Horswell, J., etal. (2007) Long-term exposure to Zn-spiked sewage sludge alters soil community structure. Soil Biol Biochem 39: 2576-2586.
-
(2007)
Soil Biol Biochem
, vol.39
, pp. 2576-2586
-
-
Macdonald, C.A.1
Singh, B.K.2
Peck, J.A.3
van Schaik, A.P.4
Hunter, L.C.5
Horswell, J.6
-
24
-
-
49249111887
-
Multiple profiling of soil microbial communities identifies potential genetic markers of metal-enriched sewage sludge
-
Macdonald, C.A., Campbell, C.D., Bacon, J.R., and Singh, B.K. (2008) Multiple profiling of soil microbial communities identifies potential genetic markers of metal-enriched sewage sludge. FEMS Microbiol Ecol 65: 555-564.
-
(2008)
FEMS Microbiol Ecol
, vol.65
, pp. 555-564
-
-
Macdonald, C.A.1
Campbell, C.D.2
Bacon, J.R.3
Singh, B.K.4
-
25
-
-
79960095376
-
Development of a real-time PCR assay for detection and quantification of Rhizobium leguminosarum bacteria and discrimination between different biovars in zinc-contaminated soil
-
Macdonald, C.A., Clark, I.M., Hirsch, P.R., Zhao, F.-J., and McGrath, S.P. (2011a) Development of a real-time PCR assay for detection and quantification of Rhizobium leguminosarum bacteria and discrimination between different biovars in zinc-contaminated soil. Appl Environ Microbiol 77: 4626-4633.
-
(2011)
Appl Environ Microbiol
, vol.77
, pp. 4626-4633
-
-
Macdonald, C.A.1
Clark, I.M.2
Hirsch, P.R.3
Zhao, F.-J.4
McGrath, S.P.5
-
26
-
-
79952452209
-
Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils
-
Macdonald, C.A., Clark, I.M., Zhao, F.-J., Hirsch, P.R., Singh, B.K., and McGrath, S.P. (2011b) Long-term impacts of zinc and copper enriched sewage sludge additions on bacterial, archaeal and fungal communities in arable and grassland soils. Soil Biol Biochem 43: 932-941.
-
(2011)
Soil Biol Biochem
, vol.43
, pp. 932-941
-
-
Macdonald, C.A.1
Clark, I.M.2
Zhao, F.-J.3
Hirsch, P.R.4
Singh, B.K.5
McGrath, S.P.6
-
27
-
-
33244466138
-
Copper fungicides
-
Pickering, S.U. (1912) Copper fungicides. J Agric Sci 4: 273-278.
-
(1912)
J Agric Sci
, vol.4
, pp. 273-278
-
-
Pickering, S.U.1
-
28
-
-
53849104257
-
The rational exploration of microbial diversity
-
Quince, C., Curtis, T.P., and Sloan, W.T. (2008) The rational exploration of microbial diversity. ISME J 2: 997-1006.
-
(2008)
ISME J
, vol.2
, pp. 997-1006
-
-
Quince, C.1
Curtis, T.P.2
Sloan, W.T.3
-
29
-
-
84863304598
-
-
R Development Core Team. Vienna, Austria: R Foundation for Statistical Computing.
-
R Development Core Team (2008) R, A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing.
-
(2008)
R, A Language and Environment for Statistical Computing
-
-
-
30
-
-
84860439468
-
Impacts of biodiversity loss escalate through time as redundancy fades
-
Reich, P.B., Tilman, D., Isbell, F., Mueller, K., Hobbie, S.E., Flynn, D.F.B., etal. (2012) Impacts of biodiversity loss escalate through time as redundancy fades. Science 336: 589-592.
-
(2012)
Science
, vol.336
, pp. 589-592
-
-
Reich, P.B.1
Tilman, D.2
Isbell, F.3
Mueller, K.4
Hobbie, S.E.5
Flynn, D.F.B.6
-
31
-
-
0032856426
-
Analysis of bacterial communities in heavy metal-contaminated soils at different levels of resolution
-
Sandaa, R.A., Torsvik, V., Enger, O., Daae, F.L., Castberg, T., and Hahn, D. (1999) Analysis of bacterial communities in heavy metal-contaminated soils at different levels of resolution. FEMS Microbiol Ecol 30: 237-251.
-
(1999)
FEMS Microbiol Ecol
, vol.30
, pp. 237-251
-
-
Sandaa, R.A.1
Torsvik, V.2
Enger, O.3
Daae, F.L.4
Castberg, T.5
Hahn, D.6
-
32
-
-
33751006742
-
Use of multiplex terminal restriction fragment length polymorphism for rapid and simultaneous analysis of different components of the soil microbial community
-
Singh, B.K., Nazaries, L., Munro, S., Anderson, I.C., and Campbell, C.D. (2006a) Use of multiplex terminal restriction fragment length polymorphism for rapid and simultaneous analysis of different components of the soil microbial community. Appl Environ Microbiol 72: 7278-7285.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 7278-7285
-
-
Singh, B.K.1
Nazaries, L.2
Munro, S.3
Anderson, I.C.4
Campbell, C.D.5
-
33
-
-
34047275342
-
Multiplex-terminal restriction fragment length polymorphism
-
Singh, B.K., and Thomas, N. (2006b) Multiplex-terminal restriction fragment length polymorphism. Nat Protoc 1: 2428-2433.
-
(2006)
Nat Protoc
, vol.1
, pp. 2428-2433
-
-
Singh, B.K.1
Thomas, N.2
-
34
-
-
84868091529
-
Metagenomics: microbial diversity through a scratched lens
-
Temperton, B., and Giovannoni, S.J. (2012) Metagenomics: microbial diversity through a scratched lens. Curr Opin Microbiol 15: 605-612.
-
(2012)
Curr Opin Microbiol
, vol.15
, pp. 605-612
-
-
Temperton, B.1
Giovannoni, S.J.2
-
35
-
-
33745259863
-
Biodiversity and ecosystem stability in a decade-long grassland experiment
-
Tilman, D., Reich, P.B., and Knops, J.M.H. (2006) Biodiversity and ecosystem stability in a decade-long grassland experiment. Nature 441: 629-632.
-
(2006)
Nature
, vol.441
, pp. 629-632
-
-
Tilman, D.1
Reich, P.B.2
Knops, J.M.H.3
-
36
-
-
0036270789
-
Microbial diversity and function in soil: from genes to ecosystems
-
Torsvik, V., and Ovreas, L. (2002) Microbial diversity and function in soil: from genes to ecosystems. Curr Opin Microbiol 5: 240-245.
-
(2002)
Curr Opin Microbiol
, vol.5
, pp. 240-245
-
-
Torsvik, V.1
Ovreas, L.2
-
37
-
-
84905377538
-
-
UK National Ecosystem Assessment The UK National Ecosystem Assessment Technical Report. UNEP-WCMC, Cambridge.
-
UK National Ecosystem Assessment (2011) The UK National Ecosystem Assessment Technical Report. UNEP-WCMC, Cambridge.
-
(2011)
-
-
-
38
-
-
33747753183
-
Comment on 'Computational improvements reveal great bacterial diversity and high metal toxicity in soil'
-
author reply 918.
-
Volkov, I., Banavar, J.R., and Maritan, A. (2006) Comment on 'Computational improvements reveal great bacterial diversity and high metal toxicity in soil'. Science 313: 918-918. author reply 918.
-
(2006)
Science
, vol.313
, pp. 918-918
-
-
Volkov, I.1
Banavar, J.R.2
Maritan, A.3
-
39
-
-
33645384503
-
Determination of the sedimentary microbial biomass and extractable lipid phosphate
-
White, D.C., Davis, W.M., Nickels, J.S., King, J.D., and Bobbie, R.J. (1979) Determination of the sedimentary microbial biomass and extractable lipid phosphate. Oecologia 40: 51-62.
-
(1979)
Oecologia
, vol.40
, pp. 51-62
-
-
White, D.C.1
Davis, W.M.2
Nickels, J.S.3
King, J.D.4
Bobbie, R.J.5
|