-
1
-
-
0242585323
-
Cereal/legume rotation effects on rhizosphere bacterial community structure in West African soils
-
Alvey, S., C. H. Yang, A. Buerkert, and D. E. Crowley. 2003. Cereal/legume rotation effects on rhizosphere bacterial community structure in West African soils. Biol. Fertil. Soils 37:73-82.
-
(2003)
Biol. Fertil. Soils
, vol.37
, pp. 73-82
-
-
Alvey, S.1
Yang, C.H.2
Buerkert, A.3
Crowley, D.E.4
-
2
-
-
0242507686
-
Diversity of fungi in organic soils under a moorland-Scots pine (Pinus sylvestris L.) gradient
-
Anderson, I. C., C. D. Campbell, and J. I. Prosser. 2003. Diversity of fungi in organic soils under a moorland-Scots pine (Pinus sylvestris L.) gradient. Environ. Microbiol. 5:1121-1132.
-
(2003)
Environ. Microbiol.
, vol.5
, pp. 1121-1132
-
-
Anderson, I.C.1
Campbell, C.D.2
Prosser, J.I.3
-
3
-
-
3543138422
-
Diversity and ecology of soil fungal communities: Increased understanding through the application of molecular techniques
-
Anderson, I. C., and J. W. G. Cairney. 2004. Diversity and ecology of soil fungal communities: increased understanding through the application of molecular techniques. Environ. Microbiol. 6:769-779.
-
(2004)
Environ. Microbiol.
, vol.6
, pp. 769-779
-
-
Anderson, I.C.1
Cairney, J.W.G.2
-
4
-
-
33644963370
-
Interactions between arbuscular mycorrhizal fungi and bacteria and their potential for stimulating plant growth
-
Artursoon, V., R. D. Finlay, and J. K. Jansson. 2006. Interactions between arbuscular mycorrhizal fungi and bacteria and their potential for stimulating plant growth. Environ. Microbiol. 8:1-10.
-
(2006)
Environ. Microbiol.
, vol.8
, pp. 1-10
-
-
Artursoon, V.1
Finlay, R.D.2
Jansson, J.K.3
-
5
-
-
33750977709
-
-
in press. [Online], London, United Kingdom
-
Black, H. I. J., C. Wood, N. Parekh, P. M. Chamberlain, A. Scott, K. Ritz, J. A. Harris, C. D. Campbell, and W. Towers. 2006. SQID phase I: prioritising biological indicators of soil quality for deployment in a national-scale soil monitoring scheme. Project no. SP0529. Scoping biological indicators of soil quality, in press. [Online.] http://www.defra.gov.uk/. Defra, London, United Kingdom.
-
(2006)
SQID Phase I: Prioritising Biological Indicators of Soil Quality for Deployment in a National-scale Soil Monitoring Scheme. Project No. SP0529. Scoping Biological Indicators of Soil Quality
-
-
Black, H.I.J.1
Wood, C.2
Parekh, N.3
Chamberlain, P.M.4
Scott, A.5
Ritz, K.6
Harris, J.A.7
Campbell, C.D.8
Towers, W.9
-
6
-
-
0037313539
-
Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities
-
Blackwood, C. B., T. Marsh, S. H. Kim, and E. A. Paul. 2003. Terminal restriction fragment length polymorphism data analysis for quantitative comparison of microbial communities. Appl. Environ. Microbiol. 69:926-932.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 926-932
-
-
Blackwood, C.B.1
Marsh, T.2
Kim, S.H.3
Paul, E.A.4
-
7
-
-
0031864898
-
Determinants of soil microbial communities: Effects of agricultural management, season, and soil type on phospholipid fatty acid profiles
-
Bossio, D. A., K. M. Scow, N. Gunapala, and K. J. Graham. 1998. Determinants of soil microbial communities: effects of agricultural management, season, and soil type on phospholipid fatty acid profiles. Microb. Ecol. 36:1-12.
-
(1998)
Microb. Ecol.
, vol.36
, pp. 1-12
-
-
Bossio, D.A.1
Scow, K.M.2
Gunapala, N.3
Graham, K.J.4
-
8
-
-
0036780507
-
Bacterial community dynamics across a floristic gradient in a temperate upland grassland ecosystem
-
Brodie, E., S. Edwards, and N. Clipson. 2002. Bacterial community dynamics across a floristic gradient in a temperate upland grassland ecosystem. Microb. Ecol. 44:260-270.
-
(2002)
Microb. Ecol.
, vol.44
, pp. 260-270
-
-
Brodie, E.1
Edwards, S.2
Clipson, N.3
-
9
-
-
0038347114
-
Native woodland expansion: Soil chemical and microbiological indicators of change
-
Chapman, S. J., C. D. Campbell, and G. Puri. 2003. Native woodland expansion: soil chemical and microbiological indicators of change. Soil Biol. Biochem. 35:753-764.
-
(2003)
Soil Biol. Biochem.
, vol.35
, pp. 753-764
-
-
Chapman, S.J.1
Campbell, C.D.2
Puri, G.3
-
10
-
-
0042524199
-
Rapid identification of bacteria from positive blood cultures by terminal restriction fragment length polymorphism profile analysis of the 16S rRNA gene
-
Christensen, J. E., J. A. Stencil, and K. D. Reed. 2003. Rapid identification of bacteria from positive blood cultures by terminal restriction fragment length polymorphism profile analysis of the 16S rRNA gene. J. Clin. Microbiol. 41:3790-3800.
-
(2003)
J. Clin. Microbiol.
, vol.41
, pp. 3790-3800
-
-
Christensen, J.E.1
Stencil, J.A.2
Reed, K.D.3
-
11
-
-
2942566096
-
Prokaryotic diversity and its limits: Microbial community structure in nature and implications for microbial ecology
-
Curtis, T. P., and W. T. Sloan. 2004. Prokaryotic diversity and its limits: microbial community structure in nature and implications for microbial ecology. Curr. Opin. Microbiol. 7:221-226.
-
(2004)
Curr. Opin. Microbiol.
, vol.7
, pp. 221-226
-
-
Curtis, T.P.1
Sloan, W.T.2
-
12
-
-
0036269049
-
Empirical and theoretical bacterial diversity in four Arizona soils
-
Dunbar, J., S. M. Barns, L. O. Ticknor, and C. R. Kuske. 2002. Empirical and theoretical bacterial diversity in four Arizona soils. Appl. Environ. Microbiol. 68:3035-3045.
-
(2002)
Appl. Environ. Microbiol.
, vol.68
, pp. 3035-3045
-
-
Dunbar, J.1
Barns, S.M.2
Ticknor, L.O.3
Kuske, C.R.4
-
13
-
-
0038221194
-
Formation of pseudo-terminal restriction fragments, a PCR-related bias affecting terminal restriction fragment length polymorphism analysis of microbial community structure
-
Egert, M., and M. W. Friedrich. 2003. Formation of pseudo-terminal restriction fragments, a PCR-related bias affecting terminal restriction fragment length polymorphism analysis of microbial community structure. Appl. Environ. Microbiol. 69:2555-2562.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 2555-2562
-
-
Egert, M.1
Friedrich, M.W.2
-
14
-
-
0027580147
-
ITS primers with enhanced specificity for basidiomycetes: Application to the identification of mycorrhiza and rusts
-
Gardes, M., and T. D. Bruns. 1993. ITS primers with enhanced specificity for basidiomycetes: application to the identification of mycorrhiza and rusts. Mol. Ecol. 2:113-118.
-
(1993)
Mol. Ecol.
, vol.2
, pp. 113-118
-
-
Gardes, M.1
Bruns, T.D.2
-
15
-
-
4744344383
-
Assessing biodiversity at landscape level in northern Thailand and Sumatra (Indonesia): The importance of environmental context
-
Gillison, A. N., and N. Liswanti. 2004. Assessing biodiversity at landscape level in northern Thailand and Sumatra (Indonesia): the importance of environmental context. Agric. Ecosyst. Environ. 104:75-86.
-
(2004)
Agric. Ecosyst. Environ.
, vol.104
, pp. 75-86
-
-
Gillison, A.N.1
Liswanti, N.2
-
16
-
-
0023958997
-
Phylogenetic group-specific oligonucleotide probes for identification of single microbial cells
-
Giovannoni, S. J., F. F. DeLong, G. J. Olsen, and N. R. Pace. 1988. Phylogenetic group-specific oligonucleotide probes for identification of single microbial cells. J. Bacteriol. 170:720-726.
-
(1988)
J. Bacteriol.
, vol.170
, pp. 720-726
-
-
Giovannoni, S.J.1
DeLong, F.F.2
Olsen, G.J.3
Pace, N.R.4
-
17
-
-
2442654454
-
Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens
-
Girvan, M. S., J. Bullimore, A. S. Ball, J. N. Pretty, and A. M. Osborn. 2004. Responses of active bacterial and fungal communities in soils under winter wheat to different fertilizer and pesticide regimens. Appl. Environ. Microbiol. 70:2692-2701.
-
(2004)
Appl. Environ. Microbiol.
, vol.70
, pp. 2692-2701
-
-
Girvan, M.S.1
Bullimore, J.2
Ball, A.S.3
Pretty, J.N.4
Osborn, A.M.5
-
18
-
-
10644260347
-
Spatial scaling of microbial eukaryote diversity
-
Green, J. L., A. J. Holmes, M. Westoby, I. Oliver, D. Briscoe, M. Danger-field, et al. 2004. Spatial scaling of microbial eukaryote diversity. Nature 432:747-750.
-
(2004)
Nature
, vol.432
, pp. 747-750
-
-
Green, J.L.1
Holmes, A.J.2
Westoby, M.3
Oliver, I.4
Briscoe, D.5
Danger-Field, M.6
-
19
-
-
0030898948
-
Comparison of 16S ribosomal DNA sequence of all Xanthomonas species
-
Hauben, L., C. Vauterin, J. Swings, and E. R. B. Moore. 1997. Comparison of 16S ribosomal DNA sequence of all Xanthomonas species. Int. J. Syst. Bacteriol. 47:328-335.
-
(1997)
Int. J. Syst. Bacteriol.
, vol.47
, pp. 328-335
-
-
Hauben, L.1
Vauterin, C.2
Swings, J.3
Moore, E.R.B.4
-
20
-
-
10644246730
-
A taxa-area relationship for bacteria
-
Horner-Devine, M. C., M. Lage, J. B. Hughes, and B. J. M. Bohannan. 2004. A taxa-area relationship for bacteria. Nature 432:750-753.
-
(2004)
Nature
, vol.432
, pp. 750-753
-
-
Horner-Devine, M.C.1
Lage, M.2
Hughes, J.B.3
Bohannan, B.J.M.4
-
21
-
-
0030894624
-
Novel group within the kingdom Crenarchaeota from boreal forest soil
-
Jurgens, G., K. Lindstrom, and A. Saano. 1997. Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl. Environ. Microbiol. 63:803-805.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 803-805
-
-
Jurgens, G.1
Lindstrom, K.2
Saano, A.3
-
22
-
-
0001857117
-
16S/23S rRNA sequencing
-
E. Stackebrandt and M. Goodfellow (ed.). John Wiley & Sons, Chichester, United Kingdom
-
Lane, D. J. 1991.16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley & Sons, Chichester, United Kingdom.
-
(1991)
Nucleic Acid Techniques in Bacterial Systematics
, pp. 115-175
-
-
Lane, D.J.1
-
23
-
-
0030661563
-
Characterization of microbial diversity by determining restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu, W. T., T. L. Marsh, H. Cheng, and F. J. Forney. 1997. Characterization of microbial diversity by determining restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl. Environ. Microbiol. 63:4516-4522.
-
(1997)
Appl. Environ. Microbiol.
, vol.63
, pp. 4516-4522
-
-
Liu, W.T.1
Marsh, T.L.2
Cheng, H.3
Forney, F.J.4
-
24
-
-
0037225001
-
Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts
-
Lueders, T., and M. W. Friedrich. 2003. Evaluation of PCR amplification bias by terminal restriction fragment length polymorphism analysis of small-subunit rRNA and mcrA genes by using defined template mixtures of methanogenic pure cultures and soil DNA extracts. Appl. Environ. Microbiol. 69:320-326.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 320-326
-
-
Lueders, T.1
Friedrich, M.W.2
-
25
-
-
0031745941
-
Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA
-
Marchesi, J. R., T. Sato, A. J. Weightman, T. A. Martin, J. C. Fry, S. J. Hiom, and W. G. Wade. 1998. Design and evaluation of useful bacterium-specific PCR primers that amplify genes coding for bacterial 16S rRNA. Appl. Environ. Microbiol. 64:795-799.
-
(1998)
Appl. Environ. Microbiol.
, vol.64
, pp. 795-799
-
-
Marchesi, J.R.1
Sato, T.2
Weightman, A.J.3
Martin, T.A.4
Fry, J.C.5
Hiom, S.J.6
Wade, W.G.7
-
26
-
-
0034851136
-
Soil and plant specific effects on bacterial community composition in the rhizosphere
-
Marschner, P., C. H. Yang, R. Lieberei, and D. E. Crowley. 2001. Soil and plant specific effects on bacterial community composition in the rhizosphere. Soil Biol. Biochem. 33:1437-1445.
-
(2001)
Soil Biol. Biochem.
, vol.33
, pp. 1437-1445
-
-
Marschner, P.1
Yang, C.H.2
Lieberei, R.3
Crowley, D.E.4
-
27
-
-
0033152351
-
Terminal restriction fragment length polymorphism (TRFLP): An emerging method for characterizing diversity among homologous populations of amplification products
-
Marsh, T. L. 1999. Terminal restriction fragment length polymorphism (TRFLP): an emerging method for characterizing diversity among homologous populations of amplification products. Curr. Opin. Microbiol. 2:323-327.
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 323-327
-
-
Marsh, T.L.1
-
28
-
-
2142858733
-
Spatial analysis of archaeal community structure in grassland soil
-
Nicol, G. W., L. A. Glover, and J. I. Prosser. 2003. Spatial analysis of archaeal community structure in grassland soil. Appl. Environ. Microbiol. 69:7420-7429.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7420-7429
-
-
Nicol, G.W.1
Glover, L.A.2
Prosser, J.I.3
-
29
-
-
32044431649
-
Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques
-
Nunan, N., T. J. Daniell, B. K. Singh, A. Papert, J. W. McNicol, and J. I. Prosser. 2005. Links between plant and rhizoplane bacterial communities in grassland soils, characterized using molecular techniques. Appl. Environ. Microbiol. 71:6784-6792.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 6784-6792
-
-
Nunan, N.1
Daniell, T.J.2
Singh, B.K.3
Papert, A.4
McNicol, J.W.5
Prosser, J.I.6
-
30
-
-
0034547801
-
An evaluation of terminal-restriction fragment length polymorphism (TRFLP) analysis for the study of microbial community structure and dynamics
-
Osborn, A. M., E. R. B. Moore, and K. N. Timmis. 2000. An evaluation of terminal-restriction fragment length polymorphism (TRFLP) analysis for the study of microbial community structure and dynamics. Environ. Microbiol. 2:39-50.
-
(2000)
Environ. Microbiol.
, vol.2
, pp. 39-50
-
-
Osborn, A.M.1
Moore, E.R.B.2
Timmis, K.N.3
-
31
-
-
0036657564
-
Molecular and functional diversity in soil micro-organisms
-
Prosser, J. I. 2002. Molecular and functional diversity in soil micro-organisms. Plant Soil 244:9-17.
-
(2002)
Plant Soil
, vol.244
, pp. 9-17
-
-
Prosser, J.I.1
-
32
-
-
10744225221
-
Surrogate taxa for biodiversity in agricultural landscapes of eastern Austria
-
Sauberer, N., K. P. Zulka, M. Bensperg-Traun, H. M. Berg, G. Bieringer, and N. Milasowszky. 2004. Surrogate taxa for biodiversity in agricultural landscapes of eastern Austria. Biol. Conserv. 117:181-190.
-
(2004)
Biol. Conserv.
, vol.117
, pp. 181-190
-
-
Sauberer, N.1
Zulka, K.P.2
Bensperg-Traun, M.3
Berg, H.M.4
Bieringer, G.5
Milasowszky, N.6
-
33
-
-
3343005637
-
Unravelling rhizosphere-microbial interactions: Opportunities and limitations
-
Singh, B. K., P. Millard, A. S. Whiteley, and J. C. Murrell. 2004. Unravelling rhizosphere-microbial interactions: opportunities and limitations. Trends Microbiol. 12:386-393.
-
(2004)
Trends Microbiol.
, vol.12
, pp. 386-393
-
-
Singh, B.K.1
Millard, P.2
Whiteley, A.S.3
Murrell, J.C.4
-
34
-
-
33750973768
-
Microbial diversity: Progress and important knowledge gaps
-
Singh, B. K. 2005. Microbial diversity: progress and important knowledge gaps. ASM News 71:210-211.
-
(2005)
ASM News
, vol.71
, pp. 210-211
-
-
Singh, B.K.1
-
35
-
-
33645054591
-
Investigating microbial community structure in soil by physiological, biochemical and molecular fingerprinting methods
-
Singh, B. K., S. Munro, E. Reid, B. Ord, J. M. Potts, E. Paterson, and P. Millard. 2006. Investigating microbial community structure in soil by physiological, biochemical and molecular fingerprinting methods. Eur. J. Soil Sci. 57:72-82.
-
(2006)
Eur. J. Soil Sci.
, vol.57
, pp. 72-82
-
-
Singh, B.K.1
Munro, S.2
Reid, E.3
Ord, B.4
Potts, J.M.5
Paterson, E.6
Millard, P.7
-
36
-
-
0034660028
-
Rapid identification of 11 human intestinal Lactobacillus species by multiplex PCR assays using group- and species-specific primers derived from the 16S-23S rRNA intergenic region and its flanking 23S rRNA
-
Song, Y., N. Kato, C. Liu, Y. Matsumiya, H. Kato, and K. Watanabe, K. 2000. Rapid identification of 11 human intestinal Lactobacillus species by multiplex PCR assays using group- and species-specific primers derived from the 16S-23S rRNA intergenic region and its flanking 23S rRNA. FEMS Microbiol. Lett. 187:167-173.
-
(2000)
FEMS Microbiol. Lett.
, vol.187
, pp. 167-173
-
-
Song, Y.1
Kato, N.2
Liu, C.3
Matsumiya, Y.4
Kato, H.5
Watanabe, K.K.6
-
37
-
-
17144378273
-
Indirect diagnosis of haemophilia B by multiplex PCR/RFLP
-
Stankovic, M., L. Rakicevic, D. Mikovic, G. Jankovic, and A. Nikolic. 2005. Indirect diagnosis of haemophilia B by multiplex PCR/RFLP. Clin. Lab. Haematol. 27:145-146.
-
(2005)
Clin. Lab. Haematol.
, vol.27
, pp. 145-146
-
-
Stankovic, M.1
Rakicevic, L.2
Mikovic, D.3
Jankovic, G.4
Nikolic, A.5
-
38
-
-
0142028036
-
Effect of copper amendment on the bacterial community in agricultural soil analysed by T-RFLP
-
Tom-Petersen, A., T. D. Leser, T. L. Marsh, and O. Nybroe. 2003. Effect of copper amendment on the bacterial community in agricultural soil analysed by T-RFLP. FEMS Microbiol. Ecol. 46:53-62.
-
(2003)
FEMS Microbiol. Ecol.
, vol.46
, pp. 53-62
-
-
Tom-Petersen, A.1
Leser, T.D.2
Marsh, T.L.3
Nybroe, O.4
-
39
-
-
0000432452
-
Analysis of phylogenetic relationship by amplification and direct sequencing of ribosomal RNA genes
-
M. A. Innis, D. H. Gelfond, J. J. Sainsky, and T. J. White (ed.). Academic Press, New York, N.Y.
-
White, T. J., T. D. Bruns, S. Lee, and J. Taylor. 1990. Analysis of phylogenetic relationship by amplification and direct sequencing of ribosomal RNA genes, p. 315-322. In M. A. Innis, D. H. Gelfond, J. J. Sainsky, and T. J. White (ed.), PCR protocol: a guide to method and applications. Academic Press, New York, N.Y.
-
(1990)
PCR Protocol: A Guide to Method and Applications
, pp. 315-322
-
-
White, T.J.1
Bruns, T.D.2
Lee, S.3
Taylor, J.4
-
40
-
-
15444367620
-
Quantitative molecular assay for fingerprinting microbial communities of wastewater and estrogen-degrading consortia
-
Yu, C. P., R. Ahuja, G. Sayler, and K. H. Chu. 2005. Quantitative molecular assay for fingerprinting microbial communities of wastewater and estrogen-degrading consortia. Appl. Environ. Microbiol. 71:1433-1444.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 1433-1444
-
-
Yu, C.P.1
Ahuja, R.2
Sayler, G.3
Chu, K.H.4
|