-
1
-
-
83855162132
-
Conventional and unconventional mechanisms for capping viral mRNA
-
Decroly E, Ferron F, Lescar J, Canard B. 2012. Conventional and unconventional mechanisms for capping viral mRNA. Nat. Rev. Microbiol. 10:51-65. http://dx.doi.org/10.1038/nrmicro2675.
-
(2012)
Nat. Rev. Microbiol.
, vol.10
, pp. 51-65
-
-
Decroly, E.1
Ferron, F.2
Lescar, J.3
Canard, B.4
-
2
-
-
77958519530
-
Enzymology of RNA cap synthesis
-
Ghosh A, Lima CD. 2010. Enzymology of RNA cap synthesis. Wiley Interdiscip Rev. RNA 1:152-172. http://dx.doi.org/10.1002/wrna.19.
-
(2010)
Wiley Interdiscip Rev. RNA
, vol.1
, pp. 152-172
-
-
Ghosh, A.1
Lima, C.D.2
-
3
-
-
9944230069
-
The polynucleotide ligase and RNA capping enzyme superfamily of covalent nucleotidyltransferases
-
Shuman S, Lima CD. 2004. The polynucleotide ligase and RNA capping enzyme superfamily of covalent nucleotidyltransferases. Curr. Opin. Struct. Biol. 14:757-764. http://dx.doi.org/10.1016/j.sbi.2004.10.006.
-
(2004)
Curr. Opin. Struct. Biol.
, vol.14
, pp. 757-764
-
-
Shuman, S.1
Lima, C.D.2
-
5
-
-
0034723208
-
Identification of the guanylyltransferase region and active site in reovirus mRNA capping protein lambda2
-
Luongo CL, Reinisch KM, Harrison SC, Nibert ML. 2000. Identification of the guanylyltransferase region and active site in reovirus mRNA capping protein lambda2. J. Biol. Chem. 275:2804-2810. http://dx.doi.org/10.1074/jbc.275.4.2804.
-
(2000)
J. Biol. Chem.
, vol.275
, pp. 2804-2810
-
-
Luongo, C.L.1
Reinisch, K.M.2
Harrison, S.C.3
Nibert, M.L.4
-
6
-
-
0034720237
-
Structure of the reovirus core at 3.6 Å resolution
-
Reinisch KM, Nibert ML, Harrison SC. 2000. Structure of the reovirus core at 3.6 Å resolution. Nature 404:960-967. http://dx.doi.org/10.1038/35010041.
-
(2000)
Nature
, vol.404
, pp. 960-967
-
-
Reinisch, K.M.1
Nibert, M.L.2
Harrison, S.C.3
-
8
-
-
36549088581
-
Structural insights into the mechanism and evolution of the vaccinia virus mRNA cap N7 methyltransferase
-
De la Pena M, Kyrieleis OJ, Cusack S. 2007. Structural insights into the mechanism and evolution of the vaccinia virus mRNA cap N7 methyltransferase. EMBO J. 26:4913-4925. http://dx.doi.org/10.1038/sj.emboj.7601912.
-
(2007)
EMBO J.
, vol.26
, pp. 4913-4925
-
-
De la Pena, M.1
Kyrieleis, O.J.2
Cusack, S.3
-
9
-
-
1642482865
-
Structure and mechanism of mRNA cap (guanine-N7) methyltransferase
-
Fabrega C, Hausmann S, Shen V, Shuman S, Lima CD. 2004. Structure and mechanism of mRNA cap (guanine-N7) methyltransferase. Mol. Cell 13:77-89. http://dx.doi.org/10.1016/S1097-2765(03)00522-7.
-
(2004)
Mol. Cell
, vol.13
, pp. 77-89
-
-
Fabrega, C.1
Hausmann, S.2
Shen, V.3
Shuman, S.4
Lima, C.D.5
-
10
-
-
0035236772
-
Reassignment of specificities of two cap methyltransferase domains in the reovirus lambda 2 protein
-
RESEARCH0038
-
Bujnicki JM, Rychlewski L. 2001. Reassignment of specificities of two cap methyltransferase domains in the reovirus lambda 2 protein. Genome Biol. 2:RESEARCH0038. http://dx.doi.org/10.1186/gb-2001-2-9-research0038.
-
(2001)
Genome Biol.
, vol.2
-
-
Bujnicki, J.M.1
Rychlewski, L.2
-
11
-
-
0037013858
-
An RNA cap (nucleoside-2'-O-)-methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization
-
Egloff MP, Benarroch D, Selisko B, Romette JL, Canard B. 2002. An RNA cap (nucleoside-2'-O-)-methyltransferase in the flavivirus RNA polymerase NS5: crystal structure and functional characterization. EMBO J. 21:2757-2768. http://dx.doi.org/10.1093/emboj/21.11.2757.
-
(2002)
EMBO J.
, vol.21
, pp. 2757-2768
-
-
Egloff, M.P.1
Benarroch, D.2
Selisko, B.3
Romette, J.L.4
Canard, B.5
-
12
-
-
0029665054
-
The 1.85 Å structure of vaccinia protein VP39: a bifunctional enzyme that participates in the modification of both mRNA ends
-
Hodel AE, Gershon PD, Shi X, Quiocho FA. 1996. The 1.85 Å structure of vaccinia protein VP39: a bifunctional enzyme that participates in the modification of both mRNA ends. Cell 85:247-256. http://dx.doi.org/10.1016/S0092-8674(00)81101-0.
-
(1996)
Cell
, vol.85
, pp. 247-256
-
-
Hodel, A.E.1
Gershon, P.D.2
Shi, X.3
Quiocho, F.A.4
-
13
-
-
84888439780
-
Rotavirus vaccines WHO position paper: January 2013-recommendations
-
Anonymous.
-
Anonymous. 2013. Rotavirus vaccines WHO position paper: January 2013-recommendations. Vaccine 31:6170-6171. http://dx.doi.org/10.1016/j.vaccine.2013.05.037.
-
(2013)
Vaccine
, vol.31
, pp. 6170-6171
-
-
-
14
-
-
84862213067
-
Part II: the viruses-the double stranded RNA viruses-family Reoviridae
-
King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Ninth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, San Diego, CA.
-
Attoui H, Becnel J, Belaganahalli S, Bergoin M, Brussaard CP, Chappell JD, Ciarlet M, del Vas M, Dermody TS, Dormitzer PR, Duncan R, Fang Q, Graham R, Guglielmi KM, Harding RM, Hillman B, Makkay A, Marzachi C, Matthijnssens J, Mertens PPC, Milne RG, Mohd Jaafar F, Mori H, Noordeloos AA, Omura T, Patton JT, Rao S, Maan M, Stoltz D, Suzuki N, Upadhyaya NM, Wei C, Zhou H. 2012. Part II: the viruses-the double stranded RNA viruses-family Reoviridae, p 541-637. In King AMQ, Adams MJ, Carstens EB, Lefkowitz EJ (ed), Virus taxonomy: classification and nomenclature. Ninth report of the International Committee on Taxonomy of Viruses. Elsevier Academic Press, San Diego, CA.
-
(2012)
Virus taxonomy: classification and nomenclature
, pp. 541-637
-
-
Attoui, H.1
Becnel, J.2
Belaganahalli, S.3
Bergoin, M.4
Brussaard, C.P.5
Chappell, J.D.6
Ciarlet, M.7
del Vas, M.8
Dermody, T.S.9
Dormitzer, P.R.10
Duncan, R.11
Fang, Q.12
Graham, R.13
Guglielmi, K.M.14
Harding, R.M.15
Hillman, B.16
Makkay, A.17
Marzachi, C.18
Matthijnssens, J.19
Mertens, P.P.C.20
Milne, R.G.21
Mohd Jaafar, F.22
Mori, H.23
Noordeloos, A.A.24
Omura, T.25
Patton, J.T.26
Rao, S.27
Maan, M.28
Stoltz, D.29
Suzuki, N.30
Upadhyaya, N.M.31
Wei, C.32
Zhou, H.33
more..
-
15
-
-
84871857649
-
Analysis of rotavirus species diversity and evolution including the newly determined full-length genome sequences of rotavirus F and G
-
Kindler E, Trojnar E, Heckel G, Otto PH, Johne R. 2013. Analysis of rotavirus species diversity and evolution including the newly determined full-length genome sequences of rotavirus F and G. Infect. Genet. Evol. 14:58-67. http://dx.doi.org/10.1016/j.meegid.2012.11.015.
-
(2013)
Infect. Genet. Evol.
, vol.14
, pp. 58-67
-
-
Kindler, E.1
Trojnar, E.2
Heckel, G.3
Otto, P.H.4
Johne, R.5
-
16
-
-
84862306692
-
Rotavirus RNA polymerases resolve into two phylogenetically distinct classes that differ in their mechanism of template recognition
-
Ogden KM, Johne R, Patton JT. 2012. Rotavirus RNA polymerases resolve into two phylogenetically distinct classes that differ in their mechanism of template recognition. Virology 431:50-57. http://dx.doi.org/10.1016/j.virol.2012.05.011.
-
(2012)
Virology
, vol.431
, pp. 50-57
-
-
Ogden, K.M.1
Johne, R.2
Patton, J.T.3
-
17
-
-
0020578810
-
Capped and conserved terminal structures in human rotavirus genome double-stranded RNA segments
-
Imai M, Akatani K, Ikegami N, Furuichi Y. 1983. Capped and conserved terminal structures in human rotavirus genome double-stranded RNA segments. J. Virol. 47:125-136.
-
(1983)
J. Virol.
, vol.47
, pp. 125-136
-
-
Imai, M.1
Akatani, K.2
Ikegami, N.3
Furuichi, Y.4
-
18
-
-
0020639054
-
Molecular biology of rotaviruses. V. Terminal structure of viral RNA species
-
McCrae MA, McCorquodale JG. 1983. Molecular biology of rotaviruses. V. Terminal structure of viral RNA species. Virology 126:204-212.
-
(1983)
Virology
, vol.126
, pp. 204-212
-
-
McCrae, M.A.1
McCorquodale, J.G.2
-
19
-
-
0024789602
-
Nucleotide sequence of gene segment 1 of a porcine rotavirus strain
-
Fukuhara N, Nishikawa K, Gorziglia M, Kapikian AZ. 1989. Nucleotide sequence of gene segment 1 of a porcine rotavirus strain. Virology 173: 743-749. http://dx.doi.org/10.1016/0042-6822(89)90590-4.
-
(1989)
Virology
, vol.173
, pp. 743-749
-
-
Fukuhara, N.1
Nishikawa, K.2
Gorziglia, M.3
Kapikian, A.Z.4
-
20
-
-
0026766537
-
Rotavirus VP3 expressed in insect cells possesses guanylyltransferase activity
-
Liu M, Mattion NM, Estes MK. 1992. Rotavirus VP3 expressed in insect cells possesses guanylyltransferase activity. Virology 188:77-84. http://dx.doi.org/10.1016/0042-6822(92)90736-9.
-
(1992)
Virology
, vol.188
, pp. 77-84
-
-
Liu, M.1
Mattion, N.M.2
Estes, M.K.3
-
21
-
-
0025968515
-
Characterization of rotavirus guanylyltransferase activity associated with polypeptide VP3
-
Pizarro JL, Sandino AM, Pizarro JM, Fernandez J, Spencer E. 1991. Characterization of rotavirus guanylyltransferase activity associated with polypeptide VP3. J. Gen. Virol. 72(Pt 2):325-332. http://dx.doi.org/10.1099/0022-1317-72-2-325.
-
(1991)
J. Gen. Virol.
, vol.72
, Issue.PART 2
, pp. 325-332
-
-
Pizarro, J.L.1
Sandino, A.M.2
Pizarro, J.M.3
Fernandez, J.4
Spencer, E.5
-
22
-
-
0032903494
-
RNA-binding and capping activities of proteins in rotavirus open cores
-
Patton JT, Chen D. 1999. RNA-binding and capping activities of proteins in rotavirus open cores. J. Virol. 73:1382-1391.
-
(1999)
J. Virol.
, vol.73
, pp. 1382-1391
-
-
Patton, J.T.1
Chen, D.2
-
23
-
-
0033527897
-
Rotavirus open cores catalyze 5'-capping and methylation of exogenous RNA: evidence that VP3 is a methyltransferase
-
Chen D, Luongo CL, Nibert ML, Patton JT. 1999. Rotavirus open cores catalyze 5'-capping and methylation of exogenous RNA: evidence that VP3 is a methyltransferase. Virology 265:120-130. http://dx.doi.org/10.1006/viro.1999.0029.
-
(1999)
Virology
, vol.265
, pp. 120-130
-
-
Chen, D.1
Luongo, C.L.2
Nibert, M.L.3
Patton, J.T.4
-
24
-
-
67649807795
-
Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM
-
Chen JZ, Settembre EC, Aoki ST, Zhang X, Bellamy AR, Dormitzer PR, Harrison SC, Grigorieff N. 2009. Molecular interactions in rotavirus assembly and uncoating seen by high-resolution cryo-EM. Proc. Natl. Acad. Sci. U. S. A. 106:10644-10648. http://dx.doi.org/10.1073/pnas.0904024106.
-
(2009)
Proc. Natl. Acad. Sci. U. S. A.
, vol.106
, pp. 10644-10648
-
-
Chen, J.Z.1
Settembre, E.C.2
Aoki, S.T.3
Zhang, X.4
Bellamy, A.R.5
Dormitzer, P.R.6
Harrison, S.C.7
Grigorieff, N.8
-
25
-
-
55249101305
-
Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1
-
Lu X, McDonald SM, Tortorici MA, Tao YJ, Vasquez-Del Carpio R, Nibert ML, Patton JT, Harrison SC. 2008. Mechanism for coordinated RNA packaging and genome replication by rotavirus polymerase VP1. Structure 16:1678-1688. http://dx.doi.org/10.1016/j.str.2008.09.006.
-
(2008)
Structure
, vol.16
, pp. 1678-1688
-
-
Lu, X.1
McDonald, S.M.2
Tortorici, M.A.3
Tao, Y.J.4
Vasquez-del Carpio, R.5
Nibert, M.L.6
Patton, J.T.7
Harrison, S.C.8
-
26
-
-
77349116567
-
X-ray crystal structure of the rotavirus inner capsid particle at 3.8 Å resolution
-
McClain B, Settembre E, Temple BR, Bellamy AR, Harrison SC. 2010. X-ray crystal structure of the rotavirus inner capsid particle at 3.8 Å resolution. J. Mol. Biol. 397:587-599. http://dx.doi.org/10.1016/j.jmb.2010.01.055.
-
(2010)
J. Mol. Biol.
, vol.397
, pp. 587-599
-
-
McClain, B.1
Settembre, E.2
Temple, B.R.3
Bellamy, A.R.4
Harrison, S.C.5
-
27
-
-
84880597984
-
Permissive replication of homologous murine rotavirus in the mouse intestine is primarily regulated by VP4 and NSP1
-
Feng N, Yasukawa LL, Sen A, Greenberg HB. 2013. Permissive replication of homologous murine rotavirus in the mouse intestine is primarily regulated by VP4 and NSP1. J. Virol. 87:8307-8316. http://dx.doi.org/10.1128/JVI.00619-13.
-
(2013)
J. Virol.
, vol.87
, pp. 8307-8316
-
-
Feng, N.1
Yasukawa, L.L.2
Sen, A.3
Greenberg, H.B.4
-
28
-
-
0029070241
-
Identification of group A rotavirus genes associated with virulence of a porcine rotavirus and host range restriction of a human rotavirus in the gnotobiotic piglet model
-
Hoshino Y, Saif LJ, Kang SY, Sereno MM, Chen WK, Kapikian AZ. 1995. Identification of group A rotavirus genes associated with virulence of a porcine rotavirus and host range restriction of a human rotavirus in the gnotobiotic piglet model. Virology 209:274-280. http://dx.doi.org/10.1006/viro.1995.1255.
-
(1995)
Virology
, vol.209
, pp. 274-280
-
-
Hoshino, Y.1
Saif, L.J.2
Kang, S.Y.3
Sereno, M.M.4
Chen, W.K.5
Kapikian, A.Z.6
-
29
-
-
80052285980
-
The rhesus rotavirus gene encoding VP4 is a major determinant in the pathogenesis of biliary atresia in newborn mice
-
Wang W, Donnelly B, Bondoc A, Mohanty SK, McNeal M, Ward R, Sestak K, Zheng S, Tiao G. 2011. The rhesus rotavirus gene encoding VP4 is a major determinant in the pathogenesis of biliary atresia in newborn mice. J. Virol. 85:9069-9077. http://dx.doi.org/10.1128/JVI.02436-10.
-
(2011)
J. Virol.
, vol.85
, pp. 9069-9077
-
-
Wang, W.1
Donnelly, B.2
Bondoc, A.3
Mohanty, S.K.4
McNeal, M.5
Ward, R.6
Sestak, K.7
Zheng, S.8
Tiao, G.9
-
30
-
-
84881415860
-
Homologous 2',5'-phosphodiesterases from disparate RNA viruses antagonize antiviral innate immunity
-
Zhang R, Jha BK, Ogden KM, Dong B, Zhao L, Elliott R, Patton JT, Silverman RH, Weiss SR. 2013. Homologous 2',5'-phosphodiesterases from disparate RNA viruses antagonize antiviral innate immunity. Proc. Natl. Acad. Sci. U. S. A. 110:13114-13119. http://dx.doi.org/10.1073/pnas.1306917110.
-
(2013)
Proc. Natl. Acad. Sci. U. S. A.
, vol.110
, pp. 13114-13119
-
-
Zhang, R.1
Jha, B.K.2
Ogden, K.M.3
Dong, B.4
Zhao, L.5
Elliott, R.6
Patton, J.T.7
Silverman, R.H.8
Weiss, S.R.9
-
31
-
-
78549284909
-
2'-O Methylation of the viral mRNA cap evades host restriction by IFIT family members
-
Daffis S, Szretter KJ, Schriewer J, Li J, Youn S, Errett J, Lin TY, Schneller S, Zust R, Dong H, Thiel V, Sen GC, Fensterl V, Klimstra WB, Pierson TC, Buller RM, Gale M, Jr, Shi PY, Diamond MS. 2010. 2'-O Methylation of the viral mRNA cap evades host restriction by IFIT family members. Nature 468:452-456. http://dx.doi.org/10.1038/nature09489.
-
(2010)
Nature
, vol.468
, pp. 452-456
-
-
Daffis, S.1
Szretter, K.J.2
Schriewer, J.3
Li, J.4
Youn, S.5
Errett, J.6
Lin, T.Y.7
Schneller, S.8
Zust, R.9
Dong, H.10
Thiel, V.11
Sen, G.C.12
Fensterl, V.13
Klimstra, W.B.14
Pierson, T.C.15
Buller, R.M.16
Gale Jr., M.17
Shi, P.Y.18
Diamond, M.S.19
-
32
-
-
84863711523
-
2'-O Methylation of the viral mRNA cap by West Nile virus evades ifit1-dependent and-independent mechanisms of host restriction in vivo
-
Szretter KJ, Daniels BP, Cho H, Gainey MD, Yokoyama WM, Gale M, Jr, Virgin HW, Klein RS, Sen GC, Diamond MS. 2012. 2'-O Methylation of the viral mRNA cap by West Nile virus evades ifit1-dependent and-independent mechanisms of host restriction in vivo. PLoS Pathog. 8:e1002698. http://dx.doi.org/10.1371/journal.ppat.1002698.
-
(2012)
PLoS Pathog.
, vol.8
-
-
Szretter, K.J.1
Daniels, B.P.2
Cho, H.3
Gainey, M.D.4
Yokoyama, W.M.5
Gale Jr., M.6
Virgin, H.W.7
Klein, R.S.8
Sen, G.C.9
Diamond, M.S.10
-
33
-
-
78751637122
-
Ribose 2'-O-methylation provides a molecular signature for the distinction of self and non-self mRNA dependent on the RNA sensor Mda5
-
Zust R, Cervantes-Barragan L, Habjan M, Maier R, Neuman BW, Ziebuhr J, Szretter KJ, Baker SC, Barchet W, Diamond MS, Siddell SG, Ludewig B, Thiel V. 2011. Ribose 2'-O-methylation provides a molecular signature for the distinction of self and non-self mRNA dependent on the RNA sensor Mda5. Nat. Immunol. 12:137-143. http://dx.doi.org/10.1038/ni.1979.
-
(2011)
Nat. Immunol.
, vol.12
, pp. 137-143
-
-
Zust, R.1
Cervantes-Barragan, L.2
Habjan, M.3
Maier, R.4
Neuman, B.W.5
Ziebuhr, J.6
Szretter, K.J.7
Baker, S.C.8
Barchet, W.9
Diamond, M.S.10
Siddell, S.G.11
Ludewig, B.12
Thiel, V.13
-
34
-
-
84875619226
-
MAFFT multiple sequence alignment software version 7: improvements in performance and usability
-
Katoh K, Standley DM. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Mol. Biol. Evol. 30:772-780. http://dx.doi.org/10.1093/molbev/mst010.
-
(2013)
Mol. Biol. Evol.
, vol.30
, pp. 772-780
-
-
Katoh, K.1
Standley, D.M.2
-
35
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739. http://dx.doi.org/10.1093/molbev/msr121.
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
36
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. 2010. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59:307-321. http://dx.doi.org/10.1093/sysbio/syq010.
-
(2010)
Syst. Biol.
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
37
-
-
79959959356
-
T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension
-
Di Tommaso P, Moretti S, Xenarios I, Orobitg M, Montanyola A, Chang JM, Taly JF, Notredame C. 2011. T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension. Nucleic Acids Res. 39:W13-W17. http://dx.doi.org/10.1093/nar/gkr245.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Di Tommaso, P.1
Moretti, S.2
Xenarios, I.3
Orobitg, M.4
Montanyola, A.5
Chang, J.M.6
Taly, J.F.7
Notredame, C.8
-
38
-
-
70349866695
-
Upcoming challenges for multiple sequence alignment methods in the high-throughput era
-
Kemena C, Notredame C. 2009. Upcoming challenges for multiple sequence alignment methods in the high-throughput era. Bioinformatics 25:2455-2465. http://dx.doi.org/10.1093/bioinformatics/btp452.
-
(2009)
Bioinformatics
, vol.25
, pp. 2455-2465
-
-
Kemena, C.1
Notredame, C.2
-
39
-
-
77954065271
-
I-TASSER: a unified platform for automated protein structure and function prediction
-
Roy A, Kucukural A, Zhang Y. 2010. I-TASSER: a unified platform for automated protein structure and function prediction. Nat. Protoc. 5:725-738. http://dx.doi.org/10.1038/nprot.2010.5.
-
(2010)
Nat. Protoc.
, vol.5
, pp. 725-738
-
-
Roy, A.1
Kucukural, A.2
Zhang, Y.3
-
40
-
-
84864460609
-
COFACTOR: an accurate comparative algorithm for structure-based protein function annotation
-
Roy A, Yang J, Zhang Y. 2012. COFACTOR: an accurate comparative algorithm for structure-based protein function annotation. Nucleic Acids Res. 40:W471-W477. http://dx.doi.org/10.1093/nar/gks372.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Roy, A.1
Yang, J.2
Zhang, Y.3
-
41
-
-
39449115394
-
I-TASSER server for protein 3D structure prediction
-
Zhang Y. 2008. I-TASSER server for protein 3D structure prediction. BMC Bioinformatics 9:40. http://dx.doi.org/10.1186/1471-2105-9-40.
-
(2008)
BMC Bioinformatics
, vol.9
, pp. 40
-
-
Zhang, Y.1
-
42
-
-
63849246525
-
Protein structure prediction on the Web: a case study using the Phyre server
-
Kelley LA, Sternberg MJ. 2009. Protein structure prediction on the Web: a case study using the Phyre server. Nat. Protoc. 4:363-371. http://dx.doi.org/10.1038/nprot.2009.2.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 363-371
-
-
Kelley, L.A.1
Sternberg, M.J.2
-
43
-
-
0031137290
-
Specific protein recognition of an mRNA cap through its alkylated base
-
Hodel AE, Gershon PD, Shi X, Wang SM, Quiocho FA. 1997. Specific protein recognition of an mRNA cap through its alkylated base. Nat. Struct. Biol. 4:350-354. http://dx.doi.org/10.1038/nsb0597-350.
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 350-354
-
-
Hodel, A.E.1
Gershon, P.D.2
Shi, X.3
Wang, S.M.4
Quiocho, F.A.5
-
44
-
-
37549046845
-
AKAP18 contains a phosphoesterase domain that binds AMP
-
Gold MG, Smith FD, Scott JD, Barford D. 2008. AKAP18 contains a phosphoesterase domain that binds AMP. J. Mol. Biol. 375:1329-1343. http://dx.doi.org/10.1016/j.jmb.2007.11.037.
-
(2008)
J. Mol. Biol.
, vol.375
, pp. 1329-1343
-
-
Gold, M.G.1
Smith, F.D.2
Scott, J.D.3
Barford, D.4
-
45
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, Ferrin TE. 2004. UCSF Chimera-a visualization system for exploratory research and analysis. J. Comput. Chem. 25:1605-1612. http://dx.doi.org/10.1002/jcc.20084.
-
(2004)
J. Comput. Chem.
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
Ferrin, T.E.7
-
46
-
-
0028961335
-
SCOP: a structural classification of proteins database for the investigation of sequences and structures
-
Murzin AG, Brenner SE, Hubbard T, Chothia C. 1995. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247:536-540. http://dx.doi.org/10.1016/S0022-2836(05)80134-2.
-
(1995)
J. Mol. Biol.
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
47
-
-
0033954256
-
The Protein Data Bank
-
Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE. 2000. The Protein Data Bank. Nucleic Acids Res. 28:235-242. http://dx.doi.org/10.1093/nar/28.1.235.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 235-242
-
-
Berman, H.M.1
Westbrook, J.2
Feng, Z.3
Gilliland, G.4
Bhat, T.N.5
Weissig, H.6
Shindyalov, I.N.7
Bourne, P.E.8
-
48
-
-
0036920683
-
Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily
-
Mazumder R, Iyer LM, Vasudevan S, Aravind L. 2002. Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily. Nucleic Acids Res. 30:5229-5243. http://dx.doi.org/10.1093/nar/gkf645.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 5229-5243
-
-
Mazumder, R.1
Iyer, L.M.2
Vasudevan, S.3
Aravind, L.4
-
49
-
-
0000262312
-
Mechanism of mRNA capping by vaccinia virus guanylyltransferase: characterization of an enzyme-guanylate intermediate
-
Shuman S, Hurwitz J. 1981. Mechanism of mRNA capping by vaccinia virus guanylyltransferase: characterization of an enzyme-guanylate intermediate. Proc. Natl. Acad. Sci. U. S. A. 78:187-191. http://dx.doi.org/10.1073/pnas.78.1.187.
-
(1981)
Proc. Natl. Acad. Sci. U. S. A.
, vol.78
, pp. 187-191
-
-
Shuman, S.1
Hurwitz, J.2
-
51
-
-
1842832231
-
Sequence analysis of the guanylyltransferase (VP3) of group A rotaviruses
-
Cook JP, McCrae MA. 2004. Sequence analysis of the guanylyltransferase (VP3) of group A rotaviruses. J. Gen. Virol. 85:929-932. http://dx.doi.org/10.1099/vir.0.19629-0.
-
(2004)
J. Gen. Virol.
, vol.85
, pp. 929-932
-
-
Cook, J.P.1
McCrae, M.A.2
-
52
-
-
0028231420
-
His-154 is involved in the linkage of the Saccharomyces cerevisiae L-A double-stranded RNA virus Gag protein to the cap structure of mRNAs and is essential for M1 satellite virus expression
-
Blanc A, Ribas JC, Wickner RB, Sonenberg N. 1994. His-154 is involved in the linkage of the Saccharomyces cerevisiae L-A double-stranded RNA virus Gag protein to the cap structure of mRNAs and is essential for M1 satellite virus expression. Mol. Cell. Biol. 14:2664-2674. http://dx.doi.org/10.1128/MCB.14.4.2664.
-
(1994)
Mol. Cell. Biol.
, vol.14
, pp. 2664-2674
-
-
Blanc, A.1
Ribas, J.C.2
Wickner, R.B.3
Sonenberg, N.4
-
53
-
-
0347634425
-
Critical residues for GTP methylation and formation of the covalent m7GMPenzyme intermediate in the capping enzyme domain of bamboo mosaic virus
-
Huang YL, Han YT, Chang YT, Hsu YH, Meng M. 2004. Critical residues for GTP methylation and formation of the covalent m7GMPenzyme intermediate in the capping enzyme domain of bamboo mosaic virus. J. Virol. 78:1271-1280. http://dx.doi.org/10.1128/JVI.78.3.1271-1280.2004.
-
(2004)
J. Virol.
, vol.78
, pp. 1271-1280
-
-
Huang, Y.L.1
Han, Y.T.2
Chang, Y.T.3
Hsu, Y.H.4
Meng, M.5
-
54
-
-
84864282616
-
Functional analysis of the conserved histidine residue of bamboo mosaic virus capping enzyme in the activity for the formation of the covalent enzyme-m7GMP intermediate
-
Lin HY, Yu CY, Hsu YH, Meng M. 2012. Functional analysis of the conserved histidine residue of bamboo mosaic virus capping enzyme in the activity for the formation of the covalent enzyme-m7GMP intermediate. FEBS Lett. 586:2326-2331. http://dx.doi.org/10.1016/j.febslet.2012.05.024.
-
(2012)
FEBS Lett.
, vol.586
, pp. 2326-2331
-
-
Lin, H.Y.1
Yu, C.Y.2
Hsu, Y.H.3
Meng, M.4
-
55
-
-
77649260792
-
Histidine-mediated RNA transfer to GDP for unique mRNA capping by vesicular stomatitis virus RNA polymerase
-
Ogino T, Yadav SP, Banerjee AK. 2010. Histidine-mediated RNA transfer to GDP for unique mRNA capping by vesicular stomatitis virus RNA polymerase. Proc. Natl. Acad. Sci. U. S. A. 107:3463-3468. http://dx.doi.org/10.1073/pnas.0913083107.
-
(2010)
Proc. Natl. Acad. Sci. U. S. A.
, vol.107
, pp. 3463-3468
-
-
Ogino, T.1
Yadav, S.P.2
Banerjee, A.K.3
-
56
-
-
0032584782
-
Guanylyltransferase and RNA 5'-triphosphatase activities of the purified expressed VP4 protein of bluetongue virus
-
Martinez-Costas J, Sutton G, Ramadevi N, Roy P. 1998. Guanylyltransferase and RNA 5'-triphosphatase activities of the purified expressed VP4 protein of bluetongue virus. J. Mol. Biol. 280:859-866. http://dx.doi.org/10.1006/jmbi.1998.1926.
-
(1998)
J. Mol. Biol.
, vol.280
, pp. 859-866
-
-
Martinez-Costas, J.1
Sutton, G.2
Ramadevi, N.3
Roy, P.4
-
57
-
-
2442612272
-
Mechanism of RNA 2'-Omethylation: evidence that the catalytic lysine acts to steer rather than deprotonate the target nucleophile
-
Li C, Xia Y, Gao X, Gershon PD. 2004. Mechanism of RNA 2'-Omethylation: evidence that the catalytic lysine acts to steer rather than deprotonate the target nucleophile. Biochemistry 43:5680-5687. http://dx.doi.org/10.1021/bi0359980.
-
(2004)
Biochemistry
, vol.43
, pp. 5680-5687
-
-
Li, C.1
Xia, Y.2
Gao, X.3
Gershon, P.D.4
-
58
-
-
77956126053
-
FlavivirusRNAcap methyltransferase: structure, function, and inhibition
-
Liu L, Dong H, Chen H, Zhang J, Ling H, Li Z, Shi PY, Li H. 2010. FlavivirusRNAcap methyltransferase: structure, function, and inhibition. Front. Biol. (Beijing) 5:286-303. http://dx.doi.org/10.1007/s11515-010-0660-y.
-
(2010)
Front. Biol. (Beijing)
, vol.5
, pp. 286-303
-
-
Liu, L.1
Dong, H.2
Chen, H.3
Zhang, J.4
Ling, H.5
Li, Z.6
Shi, P.Y.7
Li, H.8
-
59
-
-
84875062319
-
The battle between rotavirus and its host for control of the interferon signaling pathway
-
Arnold MM, Sen A, Greenberg HB, Patton JT. 2013. The battle between rotavirus and its host for control of the interferon signaling pathway. PLoS Pathog. 9:e1003064. http://dx.doi.org/10.1371/journal.ppat.1003064.
-
(2013)
PLoS Pathog.
, vol.9
-
-
Arnold, M.M.1
Sen, A.2
Greenberg, H.B.3
Patton, J.T.4
-
60
-
-
84880640767
-
Cell-type-specific activation of the oligoadenylate synthetase-RNase L pathway by a murine coronavirus
-
Zhao L, Birdwell LD, Wu A, Elliott R, Rose KM, Phillips JM, Li Y, Grinspan J, Silverman RH, Weiss SR. 2013. Cell-type-specific activation of the oligoadenylate synthetase-RNase L pathway by a murine coronavirus. J. Virol. 87:8408-8418. http://dx.doi.org/10.1128/JVI.00769-13.
-
(2013)
J. Virol.
, vol.87
, pp. 8408-8418
-
-
Zhao, L.1
Birdwell, L.D.2
Wu, A.3
Elliott, R.4
Rose, K.M.5
Phillips, J.M.6
Li, Y.7
Grinspan, J.8
Silverman, R.H.9
Weiss, S.R.10
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