Genome-wide identification and characterization of WRKY gene family in Hevea brasiliensis

Genomics

Volumn 104, Issue 1, 2014, Pages 14-23

  Li, Hui Liang ^a   Guo, Dong ^a   Yang, Zi Ping ^a,b   Tang, Xiao ^a   Peng, Shi Qing ^a  

^a INSTITUTE OF TROPICAL BIOSCIENCE AND BIOTECHNOLOGY   (China)

^b HAINAN UNIVERSITY   (China)

Author keywords

Ethylene; Hevea brasiliensis; Jasmonic acid; Small rubber particle protein; WRKY transcription factor

Indexed keywords

ETHYLENE; JASMONIC ACID; LATEX; TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

ARTICLE; CELL NUCLEUS; CELLULAR DISTRIBUTION; CONTROLLED STUDY; GENE EXPRESSION; GENE IDENTIFICATION; HEVEA BRASILIENSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT GENE; PLANT GENOME; PRIORITY JOURNAL; PROMOTER REGION; TISSUE DISTRIBUTION; TRANSCRIPTION INITIATION; WRKY GENE; ANTIBODY SPECIFICITY; BIOSYNTHESIS; GENE EXPRESSION REGULATION; GENETICS; HEVEA; MOLECULAR GENETICS; MULTIGENE FAMILY;

HEVEA BRASILIENSIS;

BASE SEQUENCE; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; HEVEA; LATEX; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; ORGAN SPECIFICITY; PLANT PROTEINS; TRANSCRIPTION FACTORS;

EID: 84904443589     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2014.04.004     Document Type: Article

References (49)

1. Eulgem T., Rushton P.J., Robatzek S., Somssich I.E. The WRKY superfamily of plant transcription factors. Trends Plant Sci. 2000, 5:199-206.
2. Zhang Y., Wang L. The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol. 2005, 5:1.
3. Mangelsen E., Kilian J., Berendzen K.W., Kolukisaoglu U.H., Harter K., Jansson C., Wanke D. Phylogenetic and comparative gene expression analysis of barley (Hordeum vulgare) WRKY transcription factor family reveals putatively retained functions between monocots and dicots. BMC Genomics 2008, 9:194.
4. Rushton P.J., Somssich I.E., Ringler P., Shen Q.J. WRKY transcription factors. Trends Plant Sci. 2010, 15:247-258.
5. Agarwal P., Reddy M.P., Chikara J. WRKY: its structure, evolutionary relationship, DNA-binding selectivity, role in stress tolerance and development of plants. Mol. Biol. Rep. 2011, 38:3883-3896.
6. Chen L., Song Y., Li S., Zhang L., Zou C., Yu D. The role of WRKY transcription factors in plant abiotic stresses. BBA-Gene Regul. 2012, 1819:120-128.
7. Chen H., Lai Z.B., Shi J.W., Xiao Y., Chen Z.X., et al. Roles of Arabidopsis WRKY18, WRKY40 and WRKY60 transcription factors in plant responses to abscisic acid and abiotic stress. BMC Plant Biol. 2010, 10:281-295.
8. Niu C., Wei W., Zhou Q., Tian A., Hao Y., Xu X. Wheat WRKY genes TaWRKY2 and TaWRKY19 regulate abiotic stress tolerance in transgenic Arabidopsis plants. Plant Cell Environ. 2012, 35:1156-1170.
9. Mishra S., Triptahi V., Singh S., Phukan U.J., Gupta M.M., Shanker K., Shukla R.K. Wound induced tanscriptional regulation of benzylisoquinoline pathway and characterization of wound inducible PsWRKY transcription factor from Papaver somniferum. PLoS ONE 2013, 10:e52784.
10. Xie Z., Zhang Z.L., Zou X.L., Yang G., Komatsu S., Shen Q.J. Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells. Plant J. 2006, 46:231-242.
11. Zhang Z.L., Xie Z., Zou X., Casaretto J., David T.H., Shen Q.J. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Plant Physiol. 2004, 134:1500-1513.
12. Zou X., Seemann J.R., Neuman D., Shen Q.J. A WRKY gene from creosote bush encodes an activator of the abscisic acid signaling pathway. J. Biol. Chem. 2004, 279:55770-55779.
13. Xu Y.H., Wang J.W., Wang S., Wang J.Y., Chen X.Y. Characterization of GaWRKY1, a cotton transcription factor that regulates the sesquiterpene synthase gene (+)-delta-cadinene synthase-A. Plant Physiol. 2004, 135:507-515.
14. Ma D., Pu G., Lei C., Ma L., Wang H., Guo Y., Chen J., Du Z., Wang H., Li G., Ye H., Liu B. Isolation and characterization of AaWRKY1, an Artemisia annua transcription factor that regulates the amorpha -4,11-diene synthase gene, a key gene of artemisinin biosynthesis. Plant Cell Physiol. 2009, 50:2146-2161.
15. Kato N., Dubouzet E., Kokabu Y., Yoshida S., Taniguchi Y., Dubouzet J.G., Yazaki K., Sato F. Identification of a WRKY protein as a transcriptional regulator of benzylisoquinoline alkaloid biosynthesis in Coptis japonica. Plant Cell Physiol. 2007, 48:488-498.
16. Guillaumie S., Mzid R., Méchin V., Léon C., Hichri I., Destrac-Irvine A., Trossat-Magnin C., Delrot S., Lauvergeat V. The grapevine transcription factor WRKY2 influences the lignin pathway and xylem development in tobacco. Plant Mol. Biol. 2010, 72:215-234.
17. Wang Y., Guo D., Li H.L., Peng S.Q. Characterization of HbWRKY1, a WRKY transcription factor from Hevea brasiliensis that negatively regulates HbSRPP. Plant Physiol. Biochem. 2013, 71:283-289.
18. Johnson C.S., Kolevski B., Smyth D.R. TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor. Plant Cell 2002, 14:1359-1375.
19. Jiang W., Yu D. Arabidopsis WRKY2 transcription factor mediates seed germination and postgermination arrest of development by abscisic acid. BMC Plant Biol. 2009, 9:96-109.
20. Xie Z., Zhang Z.L., Hanzlik S., Cook E., Shen Q.J. Salicylic acid inhibits gibberellin-induced alpha-amylase expression and seed germination via a pathway involving an abscisic-acid-inducible WRKY gene. Plant Mol. Biol. 2007, 64:293-303.
21. Ueda M., Zhang Z., Laux T. Transcriptional activation of Arabidopsis axis patterning genes WOX8/9 links zygote polarity to embryo development. Dev. Cell 2011, 20:264-270.
22. Lagace M., Matton D.P. Characterization of a WRKY transcription factor expressed in late torpedo-stage embryos of Solanum chacoense. Planta 2004, 219:185-189.
23. Miao Y., Laun T., Zimmermann P., Zentgraf U. Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis. Plant Mol. Biol. 2004, 55:853-867.
24. Ross C.A., Liu Y., Shen Q.J. The WRKY gene family in rice (Oryza sativa). J. Integr. Plant Biol. 2007, 49:827-842.
25. Ling J., Jiang W., Zhang Y., Yu H., Mao Z., Gu X., Huang S., Xie B. Genome-wide analysis of WRKY gene family in Cucumis sativus. BMC Genomics 2011, 12:471.
26. Li H.L., Zhang L.B., Guo D., Li C.Z., Peng S.Q. Identification and expression profiles of the WRKY transcription factor family in Ricinus communis. Gene 2012, 503:248-253.
27. He H., Dong Q., Shao Y., Jiang H., Zhu S., Cheng B., Xiang Y. Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa. Plant Cell Rep. 2012, 31:1199-1217.
28. Xiong W., Xu X., Zhang L., Wu P., Chen Y., Li M., Jiang H., Wu G. Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.). Gene 2013, 524:124-132.
29. Kush A. Isoprenoid biosynthesis: the Hevea factory. Plant Physiol. Biochem. 1994, 32:761-767.
30. Archer B.L., Audley B.G. New aspects of rubber biosynthesis. Bot. J. Linn. Soc. 1987, 94:181-196.
31. D'Auzac J., Jacobs J.L., Crestin H. Physiology of Rubber Tree Latex 1989, 35-87. CRC Press, Boca Raton.
32. Chow K.S., Wan K.L., Mat I.M.N., Bahari A., Tan S.H., Harikrishna K., Yeang H. Insights into rubber biosynthesis from transcriptome analysis of Hevea brasiliensis latex. J. Exp. Bot. 2007, 58:2429-2440.
33. Tang C., Xiao X., Li H., Fan Y., Yang J., Qi J., Li H. Comparative analysis of latex transcriptome reveals putative molecular mechanisms underlying super productivity of Hevea brasiliensis. PLoS ONE 2013, 8:e75307.
34. Rahman A.Y.A., Usharraj A.O., Misra B.B., Thottathil G.P., Jayasekaran K., Feng Y., Hou S., Ong S.Y., Ng F.L., Lee L.S., Tan H.S., Sakaff M.K.L.M., Teh B.S., Khoo B.F., Badai S.S., Aziz N.A., Yuryev A., Knudsen B., Dionne-Laporte A., Mchunu N.P., Yu Q., Langston B.J., Freitas T.A.K., Young A.G., Chen R., Wang L., Najimudin N., Saito J.A., Alam M. Draft genome sequence of the rubber tree (Hevea brasiliensis). BMC Genomics 2013, 2013:14-75.
35. Zhao Y., Zhou L.M., Chen Y.Y., Yang S.G., Tian W.M. MYC genes with differential responses to tapping, mechanical wounding, ethrel and methyl jasmonate in laticifers of rubber tree (Hevea brasiliensis Muell. Arg.). J. Plant Physiol. 2011, 168:1649-1658.
36. Tian W.W., Huang W.F., Zhao Y. Cloning and characterization of HbJAZ1 from the laticifer cells in rubber tree (Hevea brasiliensis Muell. Arg.). Trees 2010, 24:771-779.
37. Zhu J., Zhang Z. Ethylene stimulation of latex production in Hevea brasiliensis. Plant Signal Behav. 2009, 4:1-3.
38. Tungngoen K., Kongsawadworakul P., Viboonjun U., Katsuhara M., Brunel N., Sakr S., Narangajavana J., Chrestin H. Involvement of HbPIP2;1 and HbTIP1;1 aquaporins in ethylene stimulation of latex yield through regulation of water exchanges between inner liber and latex cells in Hevea brasiliensis. Plant Physiol. 2009, 151:843-856.
39. Oh S.K., Kang H., Shin D.H., Yang J., Chow K.S., Yeang H.Y., Wagner B., Breiteneder H., Han K.H. Isolation, characterization, and functional analysis of a novel cDNA clone encoding a small rubber particle protein from Hevea brasiliensis. J. Biol. Chem. 1999, 274:17132-17138.
40. Guo D., Li H.L., Tang X., Peng S.Q. Molecular and functional characterization of the HbSRPP promoter in response to hormones and abiotic stresses. Transgenic Res. 2014, 23:331-340.
41. Howe G.A., Jander G. Plant immunity to insect herbivores. Annu. Rev. Plant Biol. 2008, 59:41-66.
42. van der Fits L., Memelink J. ORCA3, a jasmonate-responsive transcriptional regulator of plant primary and secondary metabolism. Science 2000, 289:295-297.
43. Menke F.L.H., Champion A., Kijne J.W., Memelink J. A novel jasmonate- and elicitor-responsive element in the periwinkle secondary metabolite biosynthetic gene Str interacts with a jasmonate- and elicitor-inducible AP2-domain transcription factor, OCRA2. EMBO J. 1999, 18:4455-4463.
44. Hao B.Z., Wu J.L. Laticifer differentiation in Hevea brasileinsis: induction by exogenous jasmonic acid and linolenic acid. Ann. Bot. 2000, 85:37-43.
45. Letunic I., Doerks T., Bork P. SMART 6: recent updates and new developments. Nucleic Acids Res. 2009, 37:229-232.
46. Crooks G.E., Hon G., Chandonia J.M., Brenner S.E. WebLogo: a sequence logo generator. Genome Res. 2004, 14:1188-1190.
47. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
48. Guo A.Y., Zhu Q.H., Chen X., Luo J.C. GSDS: a gene structure display server. Yi Chuan 2007, 29:1023-1026.
49. Tang C., Qi J., Li H., Zhang C., Wang Y. A convenient and efficient protocol for isolating high-quality RNA from latex of Hevea brasiliensis (para rubber tree). J. Biochem. Biophys. Methods 2007, 70:749-754.