-
2
-
-
0034053392
-
Alternative sources of natural rubber
-
10.1007/s002530051627, 10803889
-
Mooibroek H, Cornish K. Alternative sources of natural rubber. Appl Microbiol Biotechnol 2000, 53:355-365. 10.1007/s002530051627, 10803889.
-
(2000)
Appl Microbiol Biotechnol
, vol.53
, pp. 355-365
-
-
Mooibroek, H.1
Cornish, K.2
-
3
-
-
34248160512
-
Structural characterization of natural rubber based on recent evidence from selective enzymatic treatments
-
10.1263/jbb.103.287, 17502267
-
Sakdapipanich JT. Structural characterization of natural rubber based on recent evidence from selective enzymatic treatments. J Biosci Bioeng 2007, 103:287-292. 10.1263/jbb.103.287, 17502267.
-
(2007)
J Biosci Bioeng
, vol.103
, pp. 287-292
-
-
Sakdapipanich, J.T.1
-
4
-
-
0345256451
-
Molecular cloning, expression and characterization of cDNA encoding cis-prenyltransferases from Hevea brasiliensis: a key factor participating in natural rubber biosynthesis
-
10.1046/j.1432-1033.2003.03863.x, 14622254
-
Asawatreratanakul K, Zhang YW, Wititsuwannakul D, Wititsuwannakul R, Takahashi S, Rattanapittayaporn A, Koyama T. Molecular cloning, expression and characterization of cDNA encoding cis-prenyltransferases from Hevea brasiliensis: a key factor participating in natural rubber biosynthesis. Eur J Biochem 2003, 270:4671-4680. 10.1046/j.1432-1033.2003.03863.x, 14622254.
-
(2003)
Eur J Biochem
, vol.270
, pp. 4671-4680
-
-
Asawatreratanakul, K.1
Zhang, Y.W.2
Wititsuwannakul, D.3
Wititsuwannakul, R.4
Takahashi, S.5
Rattanapittayaporn, A.6
Koyama, T.7
-
5
-
-
84874020717
-
Natural rubber biosynthesis and physic-chemical studies on plant derived latex
-
Croatia: Intech Open Acess Publisher, Elnashar M
-
Gronover CS, Wahler D, Prüfer D. Natural rubber biosynthesis and physic-chemical studies on plant derived latex. Biotechnology of Biopolymers 2011, 75-88. Croatia: Intech Open Acess Publisher, Elnashar M.
-
(2011)
Biotechnology of Biopolymers
, pp. 75-88
-
-
Gronover, C.S.1
Wahler, D.2
Prüfer, D.3
-
6
-
-
82255181373
-
Transcriptome sequencing of Hevea brasiliensis for development of microsatellite markers and construction of a genetic linkage map
-
10.1093/dnares/dsr034, 3223080, 22086998
-
Triwitayakorn K, Chatkulkawin P, Kanjanawattanawong S, Sraphet S, Yoocha T, Sangsrakru D, Chanprasert J, Ngamphiw C, Jomchai N, Therawattanasuk K, Tangphatsornruang S. Transcriptome sequencing of Hevea brasiliensis for development of microsatellite markers and construction of a genetic linkage map. DNA Res 2011, 18:471-482. 10.1093/dnares/dsr034, 3223080, 22086998.
-
(2011)
DNA Res
, vol.18
, pp. 471-482
-
-
Triwitayakorn, K.1
Chatkulkawin, P.2
Kanjanawattanawong, S.3
Sraphet, S.4
Yoocha, T.5
Sangsrakru, D.6
Chanprasert, J.7
Ngamphiw, C.8
Jomchai, N.9
Therawattanasuk, K.10
Tangphatsornruang, S.11
-
7
-
-
80052611733
-
RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis
-
10.1007/s11103-011-9811-z, 21811850
-
Xia Z, Xu H, Zhai J, Li D, Luo H, He C, Huang X. RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis. Plant Mol Biol 2011, 77:299-308. 10.1007/s11103-011-9811-z, 21811850.
-
(2011)
Plant Mol Biol
, vol.77
, pp. 299-308
-
-
Xia, Z.1
Xu, H.2
Zhai, J.3
Li, D.4
Luo, H.5
He, C.6
Huang, X.7
-
8
-
-
84858024212
-
Metabolic routes affecting rubber biosynthesis in Hevea brasiliensis latex
-
10.1093/jxb/err363, 3295384, 22162870
-
Chow KS, Mat-Isa MN, Bahari A, Ghazali AK, Alias H, Mohd-Zainuddin Z, Hoh CC, Wan KL. Metabolic routes affecting rubber biosynthesis in Hevea brasiliensis latex. J Exp Bot 2012, 63:1863-1871. 10.1093/jxb/err363, 3295384, 22162870.
-
(2012)
J Exp Bot
, vol.63
, pp. 1863-1871
-
-
Chow, K.S.1
Mat-Isa, M.N.2
Bahari, A.3
Ghazali, A.K.4
Alias, H.5
Mohd-Zainuddin, Z.6
Hoh, C.C.7
Wan, K.L.8
-
9
-
-
84861872022
-
Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets
-
10.1186/1471-2229-12-18, 3368772, 22330773
-
Gébelin V, Argout X, Engchuan W, Pitollat B, Duan C, Montoro P, Leclercq J. Identification of novel microRNAs in Hevea brasiliensis and computational prediction of their targets. BMC Plant Biol 2012, 12:18. 10.1186/1471-2229-12-18, 3368772, 22330773.
-
(2012)
BMC Plant Biol
, vol.12
, pp. 18
-
-
Gébelin, V.1
Argout, X.2
Engchuan, W.3
Pitollat, B.4
Duan, C.5
Montoro, P.6
Leclercq, J.7
-
10
-
-
84861170775
-
De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.)
-
10.1186/1471-2164-13-192, 3431226, 22607098
-
Li D, Deng Z, Qin B, Liu X, Men Z. De novo assembly and characterization of bark transcriptome using Illumina sequencing and development of EST-SSR markers in rubber tree (Hevea brasiliensis Muell. Arg.). BMC Genomics 2012, 13:192. 10.1186/1471-2164-13-192, 3431226, 22607098.
-
(2012)
BMC Genomics
, vol.13
, pp. 192
-
-
Li, D.1
Deng, Z.2
Qin, B.3
Liu, X.4
Men, Z.5
-
11
-
-
84864352611
-
Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing
-
10.1007/s00425-012-1622-1, 22407387
-
Lertpanyasampatha M, Gao L, Kongsawadworakul P, Viboonjun U, Chrestin H, Liu R, Chen X, Narangajavana J. Genome-wide analysis of microRNAs in rubber tree (Hevea brasiliensis L.) using high-throughput sequencing. Planta 2012, 236:437-445. 10.1007/s00425-012-1622-1, 22407387.
-
(2012)
Planta
, vol.236
, pp. 437-445
-
-
Lertpanyasampatha, M.1
Gao, L.2
Kongsawadworakul, P.3
Viboonjun, U.4
Chrestin, H.5
Liu, R.6
Chen, X.7
Narangajavana, J.8
-
12
-
-
84864022822
-
Development of genomic-derived simple sequence repeat markers in Hevea brasiliensis from 454 genome shotgun sequences
-
Pootakham W, Chanprasert J, Jomchai N, Sangsrakru D, Yoocha T, Tragoonrung S, Tangphatsornruang S. Development of genomic-derived simple sequence repeat markers in Hevea brasiliensis from 454 genome shotgun sequences. Plant Breeding 2012, 131:555-562.
-
(2012)
Plant Breeding
, vol.131
, pp. 555-562
-
-
Pootakham, W.1
Chanprasert, J.2
Jomchai, N.3
Sangsrakru, D.4
Yoocha, T.5
Tragoonrung, S.6
Tangphatsornruang, S.7
-
13
-
-
0031718558
-
Molecular cytogenetic studies in rubber, Hevea brasiliensis Muell. Arg. (Euphorbiaceae)
-
Leitch AR, Lim KY, Leitch IJ, O'Neill M, Chye ML, Low FC. Molecular cytogenetic studies in rubber, Hevea brasiliensis Muell. Arg. (Euphorbiaceae). Genome 1998, 41:464-467.
-
(1998)
Genome
, vol.41
, pp. 464-467
-
-
Leitch, A.R.1
Lim, K.Y.2
Leitch, I.J.3
O'Neill, M.4
Chye, M.L.5
Low, F.C.6
-
14
-
-
0030850119
-
Nuclear DNA amounts in angiosperms-583 new estimates
-
Bennett MD, Leitch IJ. Nuclear DNA amounts in angiosperms-583 new estimates. Ann Bot 1997, 80:169-196.
-
(1997)
Ann Bot
, vol.80
, pp. 169-196
-
-
Bennett, M.D.1
Leitch, I.J.2
-
15
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
1464427, 16056220
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, et al. Genome sequencing in microfabricated high-density picolitre reactors. Nature 2005, 437:376-380. 1464427, 16056220.
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Irzyk, G.P.19
Jando, S.C.20
Alenquer, M.L.21
Jarvie, T.P.22
Jirage, K.B.23
Kim, J.B.24
Knight, J.R.25
Lanza, J.R.26
Leamon, J.H.27
Lefkowitz, S.M.28
Lei, M.29
Li, J.30
more..
-
16
-
-
83155191799
-
Plantagora: modeling whole genome sequencing and assembly of plant genomes.
-
10.1371/journal.pone.0028436, 3236183, 22174807
-
Barthelson R, McFarlin AJ, Rounsley SD, Young S. Plantagora: modeling whole genome sequencing and assembly of plant genomes. PLoS One 2011, 6:e28436. 10.1371/journal.pone.0028436, 3236183, 22174807.
-
(2011)
PLoS One
, vol.6
-
-
Barthelson, R.1
McFarlin, A.J.2
Rounsley, S.D.3
Young, S.4
-
17
-
-
80052744947
-
A rubber tree's durable resistance to Microcyclus ulei is conferred by a qualitative gene and a major quantitative resistance factor
-
Le Guen V, Garcia D, Doaré F, Mattos CRR, Condina V, Couturier C, Chambon A, Weber C, Espéout S, Seguin M. A rubber tree's durable resistance to Microcyclus ulei is conferred by a qualitative gene and a major quantitative resistance factor. Tree Genet Genomes 2011, 7:877-889.
-
(2011)
Tree Genet Genomes
, vol.7
, pp. 877-889
-
-
Le Guen, V.1
Garcia, D.2
Doaré, F.3
Mattos, C.R.R.4
Condina, V.5
Couturier, C.6
Chambon, A.7
Weber, C.8
Espéout, S.9
Seguin, M.10
-
18
-
-
79251636555
-
The genome of woodland strawberry (Fragaria vesca)
-
10.1038/ng.740, 3326587, 21186353
-
Shulaev V, Sargent DJ, Crowhurst RN, Mockler TC, Folkerts O, Delcher AL, Jaiswal P, Mockaitis K, Liston A, Mane SP, Burns P, Davis TM, Slovin JP, Bassil N, Hellens RP, Evans C, Harkins T, Kodira C, Desany B, Crasta OR, Jensen RV, Allan AC, Michael TP, Setubal JC, Celton JM, Rees DJ, Williams KP, Holt SH, Ruiz Rojas JJ, Chatterjee M, et al. The genome of woodland strawberry (Fragaria vesca). Nat Genet 2011, 43:109-116. 10.1038/ng.740, 3326587, 21186353.
-
(2011)
Nat Genet
, vol.43
, pp. 109-116
-
-
Shulaev, V.1
Sargent, D.J.2
Crowhurst, R.N.3
Mockler, T.C.4
Folkerts, O.5
Delcher, A.L.6
Jaiswal, P.7
Mockaitis, K.8
Liston, A.9
Mane, S.P.10
Burns, P.11
Davis, T.M.12
Slovin, J.P.13
Bassil, N.14
Hellens, R.P.15
Evans, C.16
Harkins, T.17
Kodira, C.18
Desany, B.19
Crasta, O.R.20
Jensen, R.V.21
Allan, A.C.22
Michael, T.P.23
Setubal, J.C.24
Celton, J.M.25
Rees, D.J.26
Williams, K.P.27
Holt, S.H.28
Ruiz Rojas, J.J.29
Chatterjee, M.30
more..
-
19
-
-
80054695360
-
The draft genome and transcriptome of Cannabis sativa
-
10.1186/gb-2011-12-10-r102, 3359589, 22014239
-
van Bakel H, Stout JM, Cote AG, Tallon CM, Sharpe AG, Hughes TR, Page JE. The draft genome and transcriptome of Cannabis sativa. Genome Biol 2011, 12:R102. 10.1186/gb-2011-12-10-r102, 3359589, 22014239.
-
(2011)
Genome Biol
, vol.12
-
-
van Bakel, H.1
Stout, J.M.2
Cote, A.G.3
Tallon, C.M.4
Sharpe, A.G.5
Hughes, T.R.6
Page, J.E.7
-
20
-
-
84870265846
-
A physical, genetic and functional sequence assembly of the barley genome
-
The International Barley Genome Sequencing Consortium
-
The International Barley Genome Sequencing Consortium A physical, genetic and functional sequence assembly of the barley genome. Nature 2012, 491:711-716. The International Barley Genome Sequencing Consortium.
-
(2012)
Nature
, vol.491
, pp. 711-716
-
-
-
21
-
-
70450202132
-
The B73 maize genome: complexity, diversity, and dynamics
-
10.1126/science.1178534, 19965430
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, Strong C, Delehaunty K, Fronick C, Courtney B, Rock SM, Belter E, Du F, Kim K, Abbott RM, Cotton M, Levy A, Marchetto P, Ochoa K, Jackson SM, Gillam B, et al. The B73 maize genome: complexity, diversity, and dynamics. Science 2009, 326:1112-1115. 10.1126/science.1178534, 19965430.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
Liang, C.7
Zhang, J.8
Fulton, L.9
Graves, T.A.10
Minx, P.11
Reily, A.D.12
Courtney, L.13
Kruchowski, S.S.14
Tomlinson, C.15
Strong, C.16
Delehaunty, K.17
Fronick, C.18
Courtney, B.19
Rock, S.M.20
Belter, E.21
Du, F.22
Kim, K.23
Abbott, R.M.24
Cotton, M.25
Levy, A.26
Marchetto, P.27
Ochoa, K.28
Jackson, S.M.29
Gillam, B.30
more..
-
22
-
-
42949086676
-
Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments
-
10.1186/gb-2008-9-1-r7, 2395244, 18190707
-
Haas BJ, Salzberg SL, Zhu W, Pertea M, Allen JE, Orvis J, White O, Buell CR, Wortman JR. Automated eukaryotic gene structure annotation using EVidenceModeler and the program to assemble spliced alignments. Genome Biol 2008, 9:R7. 10.1186/gb-2008-9-1-r7, 2395244, 18190707.
-
(2008)
Genome Biol
, vol.9
-
-
Haas, B.J.1
Salzberg, S.L.2
Zhu, W.3
Pertea, M.4
Allen, J.E.5
Orvis, J.6
White, O.7
Buell, C.R.8
Wortman, J.R.9
-
23
-
-
40549098736
-
-
Boutet E, Lieberherr D, Tognolli M, Schneider M, Bairoch A. UniProtKB/Swiss-Prot. Methods Mol Biol 2007, 406:89-112.
-
(2007)
UniProtKB/Swiss-Prot. Methods Mol Biol
, vol.406
, pp. 89-112
-
-
Boutet, E.1
Lieberherr, D.2
Tognolli, M.3
Schneider, M.4
Bairoch, A.5
-
24
-
-
0034800374
-
InterProScan - an integration platform for the signature-recognition methods in InterPro
-
10.1093/bioinformatics/17.9.847, 11590104
-
Zdobnov EM, Apweiler R. InterProScan - an integration platform for the signature-recognition methods in InterPro. Bioinformatics 2001, 17:847-848. 10.1093/bioinformatics/17.9.847, 11590104.
-
(2001)
Bioinformatics
, vol.17
, pp. 847-848
-
-
Zdobnov, E.M.1
Apweiler, R.2
-
25
-
-
0345863935
-
The KEGG resource for deciphering the genome
-
10.1093/nar/gkh063, 308797, 14681412
-
Kanehisa M, Goto S, Kawashima S, Okuno Y, Hattori M. The KEGG resource for deciphering the genome. Nucleic Acids Res 2004, 32:D277-D280. 10.1093/nar/gkh063, 308797, 14681412.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Kanehisa, M.1
Goto, S.2
Kawashima, S.3
Okuno, Y.4
Hattori, M.5
-
26
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
10.1186/1471-2105-4-41, 222959, 12969510
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, Koonin EV, Krylov DM, Mazumder R, Mekhedov SL, Nikolskaya AN, Rao BS, Smirnov S, Sverdlov AV, Vasudevan S, Wolf YI, Yin JJ, Natale DA. The COG database: an updated version includes eukaryotes. BMC Bioinformatics 2003, 4:41. 10.1186/1471-2105-4-41, 222959, 12969510.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
Koonin, E.V.6
Krylov, D.M.7
Mazumder, R.8
Mekhedov, S.L.9
Nikolskaya, A.N.10
Rao, B.S.11
Smirnov, S.12
Sverdlov, A.V.13
Vasudevan, S.14
Wolf, Y.I.15
Yin, J.J.16
Natale, D.A.17
-
27
-
-
33644876020
-
Pfam: clans, web tools and services
-
10.1093/nar/gkj149, 1347511, 16381856
-
Finn RD, Mistry J, Schuster-Böckler B, Griffiths-Jones S, Hollich V, Lassmann T, Moxon S, Marshall M, Khanna A, Durbin R, Eddy SR, Sonnhammer EL, Bateman A. Pfam: clans, web tools and services. Nucleic Acids Res 2006, 34:D247-D251. 10.1093/nar/gkj149, 1347511, 16381856.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Finn, R.D.1
Mistry, J.2
Schuster-Böckler, B.3
Griffiths-Jones, S.4
Hollich, V.5
Lassmann, T.6
Moxon, S.7
Marshall, M.8
Khanna, A.9
Durbin, R.10
Eddy, S.R.11
Sonnhammer, E.L.12
Bateman, A.13
-
28
-
-
79952702685
-
Characterization of the complete chloroplast genome of Hevea brasiliensis reveals genome rearrangement, RNA editing sites and phylogenetic relationships
-
10.1016/j.gene.2011.01.002, 21241787
-
Tangphatsornruang S, Uthaipaisanwong P, Sangsrakru D, Chanprasert J, Yoocha T, Jomchai N, Tragoonrung S. Characterization of the complete chloroplast genome of Hevea brasiliensis reveals genome rearrangement, RNA editing sites and phylogenetic relationships. Gene 2011, 475:104-112. 10.1016/j.gene.2011.01.002, 21241787.
-
(2011)
Gene
, vol.475
, pp. 104-112
-
-
Tangphatsornruang, S.1
Uthaipaisanwong, P.2
Sangsrakru, D.3
Chanprasert, J.4
Yoocha, T.5
Jomchai, N.6
Tragoonrung, S.7
-
29
-
-
0034069495
-
Gene Ontology: tool for the unification of biology
-
10.1038/75556, 3037419, 10802651
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, Issel-Tarver L, Kasarskis A, Lewis S, Matese JC, Richardson JE, Ringwald M, Rubin GM, Sherlock G. Gene Ontology: tool for the unification of biology. Nat Genet 2000, 25:25-29. 10.1038/75556, 3037419, 10802651.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
Issel-Tarver, L.13
Kasarskis, A.14
Lewis, S.15
Matese, J.C.16
Richardson, J.E.17
Ringwald, M.18
Rubin, G.M.19
Sherlock, G.20
more..
-
30
-
-
34347248061
-
Carbohydrate reserves as a competing sink: evidence from tapping rubber trees
-
10.1093/treephys/27.6.881, 17331906
-
Silpi U, Lacointe A, Kasempsap P, Thanysawanyangkura S, Chantuma P, Gohet E, Musigamart N, Clément A, Améglio T, Thaler P. Carbohydrate reserves as a competing sink: evidence from tapping rubber trees. Tree Physiol 2007, 27:881-889. 10.1093/treephys/27.6.881, 17331906.
-
(2007)
Tree Physiol
, vol.27
, pp. 881-889
-
-
Silpi, U.1
Lacointe, A.2
Kasempsap, P.3
Thanysawanyangkura, S.4
Chantuma, P.5
Gohet, E.6
Musigamart, N.7
Clément, A.8
Améglio, T.9
Thaler, P.10
-
31
-
-
84862017430
-
Transcriptome and gene expression analysis in cold-acclimated guayule (Parthenium argentatum) rubber-producing tissue
-
Ponciano G, McMahan CM, Xie W, Lazo GR, Coffelt TA, Collins-Silva J, Nural-Taban A, Gollery M, Shintani DK, Whalen MC. Transcriptome and gene expression analysis in cold-acclimated guayule (Parthenium argentatum) rubber-producing tissue. Phytochemistry 2012, 79:57-66.
-
(2012)
Phytochemistry
, vol.79
, pp. 57-66
-
-
Ponciano, G.1
McMahan, C.M.2
Xie, W.3
Lazo, G.R.4
Coffelt, T.A.5
Collins-Silva, J.6
Nural-Taban, A.7
Gollery, M.8
Shintani, D.K.9
Whalen, M.C.10
-
32
-
-
77956440518
-
The sucrose transporter HbSUT3 plays an active role in sucrose loading to laticifer and rubber productivity in exploited trees of Hevea brasiliensis (para rubber tree)
-
10.1111/j.1365-3040.2010.02175.x, 20492551
-
Tang C, Huang D, Yang J, Liu S, Sakr S, Li H, Zhou Y, Qin Y. The sucrose transporter HbSUT3 plays an active role in sucrose loading to laticifer and rubber productivity in exploited trees of Hevea brasiliensis (para rubber tree). Plant Cell Environ 2010, 33:1708-1720. 10.1111/j.1365-3040.2010.02175.x, 20492551.
-
(2010)
Plant Cell Environ
, vol.33
, pp. 1708-1720
-
-
Tang, C.1
Huang, D.2
Yang, J.3
Liu, S.4
Sakr, S.5
Li, H.6
Zhou, Y.7
Qin, Y.8
-
33
-
-
85051983825
-
The formation of isoprenoids in Hevea latex
-
Boca Raton: CRC Press, d'Auzac J, Jacob JL, Chrestin L
-
Kekwick RGO. The formation of isoprenoids in Hevea latex. Physiology of Rubber Tree Latex 1989, 145-164. Boca Raton: CRC Press, d'Auzac J, Jacob JL, Chrestin L.
-
(1989)
Physiology of Rubber Tree Latex
, pp. 145-164
-
-
Kekwick, R.G.O.1
-
34
-
-
1542685246
-
Transcriptome analysis reveals novel features of the molecular events occurring in the laticifers of Hevea brasiliensis (para rubber tree)
-
Ko JH, Chow KS, Han KH. Transcriptome analysis reveals novel features of the molecular events occurring in the laticifers of Hevea brasiliensis (para rubber tree). Plant Mol Biol 2003, 53:479-492.
-
(2003)
Plant Mol Biol
, vol.53
, pp. 479-492
-
-
Ko, J.H.1
Chow, K.S.2
Han, K.H.3
-
35
-
-
56749161372
-
Cloning and characterization of the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway genes of a natural-rubber producing plant
-
Sando T, Takeno S, Watanabe N, Okumoto H, Kuzuyama T, Yamashita A, Hattori M, Ogasawara N, Fukusaki E, Kobayashi A. Cloning and characterization of the 2-C-methyl-D-erythritol 4-phosphate (MEP) pathway genes of a natural-rubber producing plant. Hevea brasiliensis. Biosci Biotechnol Biochem 2008, 72:2903-2917.
-
(2008)
Hevea brasiliensis. Biosci Biotechnol Biochem
, vol.72
, pp. 2903-2917
-
-
Sando, T.1
Takeno, S.2
Watanabe, N.3
Okumoto, H.4
Kuzuyama, T.5
Yamashita, A.6
Hattori, M.7
Ogasawara, N.8
Fukusaki, E.9
Kobayashi, A.10
-
36
-
-
9644283093
-
Significant role of bacterial undecaprenyl diphosphate (C55-UPP) for rubber synthesis by Hevea latex enzymes
-
10.1002/mabi.200400096, 15543542
-
Rattanapittayaporn A, Wititsuwannakul D, Wititsuwannakul R. Significant role of bacterial undecaprenyl diphosphate (C55-UPP) for rubber synthesis by Hevea latex enzymes. Macromol Biosci 2004, 4:1039-1052. 10.1002/mabi.200400096, 15543542.
-
(2004)
Macromol Biosci
, vol.4
, pp. 1039-1052
-
-
Rattanapittayaporn, A.1
Wititsuwannakul, D.2
Wititsuwannakul, R.3
-
37
-
-
0037322820
-
Molecular analysis of cis-prenyl chain elongating enzymes
-
10.1039/b108934j, 12636086
-
Kharel Y, Koyama T. Molecular analysis of cis-prenyl chain elongating enzymes. Nat Prod Rep 2003, 20:111-118. 10.1039/b108934j, 12636086.
-
(2003)
Nat Prod Rep
, vol.20
, pp. 111-118
-
-
Kharel, Y.1
Koyama, T.2
-
38
-
-
79957613599
-
MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
10.1093/molbev/msr121, 3203626, 21546353
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 2011, 28:2731-2739. 10.1093/molbev/msr121, 3203626, 21546353.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
39
-
-
78751613558
-
Allelic variation in cell wall candidate genes affecting solid wood properties in natural populations and land races of Pinus radiata
-
10.1534/genetics.110.116582, 2927771, 20498299
-
Dillon SK, Nolan M, Li W, Bell C, Wu HX, Southerton SG. Allelic variation in cell wall candidate genes affecting solid wood properties in natural populations and land races of Pinus radiata. Genetics 2010, 185:1477-1487. 10.1534/genetics.110.116582, 2927771, 20498299.
-
(2010)
Genetics
, vol.185
, pp. 1477-1487
-
-
Dillon, S.K.1
Nolan, M.2
Li, W.3
Bell, C.4
Wu, H.X.5
Southerton, S.G.6
-
40
-
-
0033792207
-
The cellulose synthase superfamily
-
10.1104/pp.124.2.495, 1539280, 11027699
-
Richmond TA, Somerville CR. The cellulose synthase superfamily. Plant Physiol 2000, 124:495-498. 10.1104/pp.124.2.495, 1539280, 11027699.
-
(2000)
Plant Physiol
, vol.124
, pp. 495-498
-
-
Richmond, T.A.1
Somerville, C.R.2
-
41
-
-
22444446783
-
The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes
-
10.1007/s00425-005-1498-4, 15940463
-
Djerbi S, Lindskog M, Arvestad L, Sterky F, Teeri TT. The genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes. Planta 2005, 221:739-746. 10.1007/s00425-005-1498-4, 15940463.
-
(2005)
Planta
, vol.221
, pp. 739-746
-
-
Djerbi, S.1
Lindskog, M.2
Arvestad, L.3
Sterky, F.4
Teeri, T.T.5
-
42
-
-
33748760611
-
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
-
10.1126/science.1128691, 16973872
-
Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapman J, Chen GL, Cooper D, Coutinho PM, Couturier J, Covert S, Cronk Q, et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 2006, 313:1596-1604. 10.1126/science.1128691, 16973872.
-
(2006)
Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
Bohlmann, J.4
Grigoriev, I.5
Hellsten, U.6
Putnam, N.7
Ralph, S.8
Rombauts, S.9
Salamov, A.10
Schein, J.11
Sterck, L.12
Aerts, A.13
Bhalerao, R.R.14
Bhalerao, R.P.15
Blaudez, D.16
Boerjan, W.17
Brun, A.18
Brunner, A.19
Busov, V.20
Campbell, M.21
Carlson, J.22
Chalot, M.23
Chapman, J.24
Chen, G.L.25
Cooper, D.26
Coutinho, P.M.27
Couturier, J.28
Covert, S.29
Cronk, Q.30
more..
-
43
-
-
4744349055
-
Systemic acquired resistance
-
10.1146/annurev.phyto.42.040803.140421, 15283665
-
Durrant WE, Dong X. Systemic acquired resistance. Annu Rev Phytopathol 2004, 42:185-209. 10.1146/annurev.phyto.42.040803.140421, 15283665.
-
(2004)
Annu Rev Phytopathol
, vol.42
, pp. 185-209
-
-
Durrant, W.E.1
Dong, X.2
-
44
-
-
71349087912
-
Genome-wide identification of NBS-encoding resistance genes in Brassica rapa
-
10.1007/s00438-009-0492-0, 2777221, 19838736
-
Mun JH, Yu HJ, Park S, Park BS. Genome-wide identification of NBS-encoding resistance genes in Brassica rapa. Mol Genet Genomics 2009, 282:617-631. 10.1007/s00438-009-0492-0, 2777221, 19838736.
-
(2009)
Mol Genet Genomics
, vol.282
, pp. 617-631
-
-
Mun, J.H.1
Yu, H.J.2
Park, S.3
Park, B.S.4
-
45
-
-
0035988431
-
Allergenic protein of natural rubber latex
-
10.1016/S1046-2023(02)00049-X, 12079415
-
Yeang HY, Arif SAM, Yusof F, Sunderasan E. Allergenic protein of natural rubber latex. Methods 2002, 27:32-45. 10.1016/S1046-2023(02)00049-X, 12079415.
-
(2002)
Methods
, vol.27
, pp. 32-45
-
-
Yeang, H.Y.1
Arif, S.A.M.2
Yusof, F.3
Sunderasan, E.4
-
46
-
-
0037076266
-
Systemic wound signaling in plants: a new perception
-
10.1073/pnas.112196499, 124432, 12011413
-
Ryan CA, Moura DS. Systemic wound signaling in plants: a new perception. Proc Natl Acad Sci USA 2002, 99:6519-6520. 10.1073/pnas.112196499, 124432, 12011413.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 6519-6520
-
-
Ryan, C.A.1
Moura, D.S.2
-
47
-
-
79953254420
-
Evolutionary and comparative analysis of MYB and bHLH plant transcription factors.
-
Feller A, Machemer K, Braun EL, Grotewold E. Evolutionary and comparative analysis of MYB and bHLH plant transcription factors. Plant J 2011, 6:94-116.
-
(2011)
Plant J
, vol.6
, pp. 94-116
-
-
Feller, A.1
Machemer, K.2
Braun, E.L.3
Grotewold, E.4
-
48
-
-
40549134512
-
Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice
-
10.1186/1471-2164-9-44, 2267713, 18221561
-
Wang D, Guo Y, Wu C, Yang G, Li Y, Zheng C. Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice. BMC Genomics 2008, 9:44. 10.1186/1471-2164-9-44, 2267713, 18221561.
-
(2008)
BMC Genomics
, vol.9
, pp. 44
-
-
Wang, D.1
Guo, Y.2
Wu, C.3
Yang, G.4
Li, Y.5
Zheng, C.6
-
49
-
-
51449111835
-
Green transcription factors: a Chlamydomonas overview
-
10.1534/genetics.107.086090, 2390610, 18493038
-
Riaño-Pachón DM, Corrêa LGG, Trejos-Espinosa R, Mueller-Roeber B. Green transcription factors: a Chlamydomonas overview. Genetics 2008, 179:31-39. 10.1534/genetics.107.086090, 2390610, 18493038.
-
(2008)
Genetics
, vol.179
, pp. 31-39
-
-
Riaño-Pachón, D.M.1
Corrêa, L.G.G.2
Trejos-Espinosa, R.3
Mueller-Roeber, B.4
-
50
-
-
77953286060
-
WRKY transcription factors
-
10.1016/j.tplants.2010.02.006, 20304701
-
Rushton PJ, Somssich IE, Ringler P, Shen QJ. WRKY transcription factors. Trends Plant Sci 2010, 15:247-258. 10.1016/j.tplants.2010.02.006, 20304701.
-
(2010)
Trends Plant Sci
, vol.15
, pp. 247-258
-
-
Rushton, P.J.1
Somssich, I.E.2
Ringler, P.3
Shen, Q.J.4
-
51
-
-
34547982039
-
MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress
-
10.1186/1471-2164-8-242, 1947970, 17640358
-
Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S. MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 2007, 8:242. 10.1186/1471-2164-8-242, 1947970, 17640358.
-
(2007)
BMC Genomics
, vol.8
, pp. 242
-
-
Arora, R.1
Agarwal, P.2
Ray, S.3
Singh, A.K.4
Singh, V.P.5
Tyagi, A.K.6
Kapoor, S.7
-
52
-
-
42949157236
-
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
-
10.1038/nature06856, 2836516, 18432245
-
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, Chen C, Qian W, Shen J, Du P, Eustice M, Tong E, Tang H, Lyons E, Paull RE, Michael TP, Wall K, Rice DW, Albert H, Wang ML, Zhu YJ, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 2008, 452:991-996. 10.1038/nature06856, 2836516, 18432245.
-
(2008)
Nature
, vol.452
, pp. 991-996
-
-
Ming, R.1
Hou, S.2
Feng, Y.3
Yu, Q.4
Dionne-Laporte, A.5
Saw, J.H.6
Senin, P.7
Wang, W.8
Ly, B.V.9
Lewis, K.L.10
Salzberg, S.L.11
Feng, L.12
Jones, M.R.13
Skelton, R.L.14
Murray, J.E.15
Chen, C.16
Qian, W.17
Shen, J.18
Du, P.19
Eustice, M.20
Tong, E.21
Tang, H.22
Lyons, E.23
Paull, R.E.24
Michael, T.P.25
Wall, K.26
Rice, D.W.27
Albert, H.28
Wang, M.L.29
Zhu, Y.J.30
more..
-
53
-
-
27744566733
-
Circadian clock signaling in Arabidopsis thaliana: from gene expression to physiology and development
-
10.1387/ijdb.041968pm, 16096959
-
Más P. Circadian clock signaling in Arabidopsis thaliana: from gene expression to physiology and development. Int J Dev Biol 2005, 49:491-500. 10.1387/ijdb.041968pm, 16096959.
-
(2005)
Int J Dev Biol
, vol.49
, pp. 491-500
-
-
Más, P.1
-
54
-
-
34249819663
-
F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress
-
10.1104/pp.106.091900, 1851844, 17293439
-
Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK, Khurana JP. F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiol 2007, 143:1467-1483. 10.1104/pp.106.091900, 1851844, 17293439.
-
(2007)
Plant Physiol
, vol.143
, pp. 1467-1483
-
-
Jain, M.1
Nijhawan, A.2
Arora, R.3
Agarwal, P.4
Ray, S.5
Sharma, P.6
Kapoor, S.7
Tyagi, A.K.8
Khurana, J.P.9
-
55
-
-
57749114494
-
The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants
-
10.1104/pp.108.121921, 2577272, 18775973
-
Yang X, Kalluri UC, Jawdy S, Gunter LE, Yin T, Tschaplinski TJ, Weston DJ, Ranjan P, Tuskan GA. The F-box gene family is expanded in herbaceous annual plants relative to woody perennial plants. Plant Physiol 2008, 148:1189-1200. 10.1104/pp.108.121921, 2577272, 18775973.
-
(2008)
Plant Physiol
, vol.148
, pp. 1189-1200
-
-
Yang, X.1
Kalluri, U.C.2
Jawdy, S.3
Gunter, L.E.4
Yin, T.5
Tschaplinski, T.J.6
Weston, D.J.7
Ranjan, P.8
Tuskan, G.A.9
-
56
-
-
79551550373
-
Phylogenetic comparison of F-box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift
-
10.1371/journal.pone.0016219, 3030570, 21297981
-
Hua Z, Zou C, Shiu SH, Vierstra RD. Phylogenetic comparison of F-box (FBX) gene superfamily within the plant kingdom reveals divergent evolutionary histories indicative of genomic drift. PLoS One 2011, 6:e16219. 10.1371/journal.pone.0016219, 3030570, 21297981.
-
(2011)
PLoS One
, vol.6
-
-
Hua, Z.1
Zou, C.2
Shiu, S.H.3
Vierstra, R.D.4
-
57
-
-
75649097452
-
Carotenoid biosynthesis genes in rice: structural analysis, genome-wide expression profiling and phylogenetic analysis
-
10.1007/s00438-009-0495-x, 19890663
-
Chaudhary N, Nijhawan A, Khurana JP, Khurana P. Carotenoid biosynthesis genes in rice: structural analysis, genome-wide expression profiling and phylogenetic analysis. Mol Genet Genomics 2010, 283:13-33. 10.1007/s00438-009-0495-x, 19890663.
-
(2010)
Mol Genet Genomics
, vol.283
, pp. 13-33
-
-
Chaudhary, N.1
Nijhawan, A.2
Khurana, J.P.3
Khurana, P.4
-
58
-
-
38949119483
-
Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila
-
10.1371/journal.pgen.0040003, 2211543, 18208328
-
Yang S, Arguello JR, Li X, Ding Y, Zhou Q, Chen Y, Zhang Y, Zhao R, Brunet F, Peng L, Long M, Wang W. Repetitive element-mediated recombination as a mechanism for new gene origination in Drosophila. PLoS Genet 2008, 4:e3. 10.1371/journal.pgen.0040003, 2211543, 18208328.
-
(2008)
PLoS Genet
, vol.4
-
-
Yang, S.1
Arguello, J.R.2
Li, X.3
Ding, Y.4
Zhou, Q.5
Chen, Y.6
Zhang, Y.7
Zhao, R.8
Brunet, F.9
Peng, L.10
Long, M.11
Wang, W.12
-
59
-
-
77952886150
-
Assembly algorithms for next-generation sequencing data
-
10.1016/j.ygeno.2010.03.001, 2874646, 20211242
-
Miller JR, Koren S, Sutton G. Assembly algorithms for next-generation sequencing data. Genomics 2010, 95:315-327. 10.1016/j.ygeno.2010.03.001, 2874646, 20211242.
-
(2010)
Genomics
, vol.95
, pp. 315-327
-
-
Miller, J.R.1
Koren, S.2
Sutton, G.3
-
60
-
-
84860584906
-
-
RepeatModeler http://www.repeatmasker.org/RepeatModeler.html.
-
RepeatModeler
-
-
-
61
-
-
0037255072
-
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
-
10.1093/nar/gkg095, 165542, 12520024
-
Boeckmann B, Bairoch A, Apweiler R, Blatter MC, Estreicher A, Gasteiger E, Martin MJ, Michoud K, O'Donovan C, Phan I, Pilbout S, Schneider M. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003. Nucleic Acids Res 2003, 31:365-370. 10.1093/nar/gkg095, 165542, 12520024.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 365-370
-
-
Boeckmann, B.1
Bairoch, A.2
Apweiler, R.3
Blatter, M.C.4
Estreicher, A.5
Gasteiger, E.6
Martin, M.J.7
Michoud, K.8
O'Donovan, C.9
Phan, I.10
Pilbout, S.11
Schneider, M.12
-
62
-
-
84870661434
-
-
RepeatMasker http://www.repeatmasker.org.
-
RepeatMasker
-
-
-
63
-
-
75649124547
-
De novo assembly of human genomes with massively parallel short read sequencing
-
10.1101/gr.097261.109, 2813482, 20019144
-
Li R, Zhu H, Ruan J, Qian W, Fang X, Shi Z, Li Y, Li S, Shan G, Kristiansen K, Li S, Yang H, Wang J, Wang J. De novo assembly of human genomes with massively parallel short read sequencing. Genome Res 2010, 20:265-272. 10.1101/gr.097261.109, 2813482, 20019144.
-
(2010)
Genome Res
, vol.20
, pp. 265-272
-
-
Li, R.1
Zhu, H.2
Ruan, J.3
Qian, W.4
Fang, X.5
Shi, Z.6
Li, Y.7
Li, S.8
Shan, G.9
Kristiansen, K.10
Li, S.11
Yang, H.12
Wang, J.13
Wang, J.14
-
64
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
65
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
10.1093/bioinformatics/btp120, 2672628, 19289445
-
Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25:1105-1111. 10.1093/bioinformatics/btp120, 2672628, 19289445.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
66
-
-
0141905891
-
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
-
10.1093/nar/gkg770, 206470, 14500829
-
Haas BJ, Delcher AL, Mount SM, Wortman JR, Smith RK, Hannick LI, Maiti R, Ronning CM, Rusch DB, Town CD, Salzberg SL, White O. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies. Nucleic Acids Res 2003, 31:5654-5666. 10.1093/nar/gkg770, 206470, 14500829.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 5654-5666
-
-
Haas, B.J.1
Delcher, A.L.2
Mount, S.M.3
Wortman, J.R.4
Smith, R.K.5
Hannick, L.I.6
Maiti, R.7
Ronning, C.M.8
Rusch, D.B.9
Town, C.D.10
Salzberg, S.L.11
White, O.12
-
67
-
-
24044447664
-
Automated generation of heuristics for biological sequence comparison
-
10.1186/1471-2105-6-31, 553969, 15713233
-
Slater GS, Birney E. Automated generation of heuristics for biological sequence comparison. BMC Bioinformatics 2005, 6:31. 10.1186/1471-2105-6-31, 553969, 15713233.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 31
-
-
Slater, G.S.1
Birney, E.2
-
68
-
-
33644660956
-
Comparative plant genomics resources at PlantGDB
-
10.1104/pp.104.059212, 1255980, 16219921
-
Dong Q, Lawrence CJ, Schlueter SD, Wilkerson MD, Kurtz S, Lushbough C, Brendel V. Comparative plant genomics resources at PlantGDB. Plant Physiol 2005, 139:610-618. 10.1104/pp.104.059212, 1255980, 16219921.
-
(2005)
Plant Physiol
, vol.139
, pp. 610-618
-
-
Dong, Q.1
Lawrence, C.J.2
Schlueter, S.D.3
Wilkerson, M.D.4
Kurtz, S.5
Lushbough, C.6
Brendel, V.7
-
69
-
-
18744383071
-
GMAP: a genomic mapping and alignment program for mRNA and EST sequences
-
10.1093/bioinformatics/bti310, 15728110
-
Wu TD, Watanabe CK. GMAP: a genomic mapping and alignment program for mRNA and EST sequences. Bioinformatics 2005, 21:1859-1875. 10.1093/bioinformatics/bti310, 15728110.
-
(2005)
Bioinformatics
, vol.21
, pp. 1859-1875
-
-
Wu, T.D.1
Watanabe, C.K.2
-
70
-
-
0031573382
-
A tool for analyzing and annotating genomic sequences
-
10.1006/geno.1997.4984, 9403056
-
Huang X, Adams MD, Zhou H, Kerlavage AR. A tool for analyzing and annotating genomic sequences. Genomics 1997, 46:37-45. 10.1006/geno.1997.4984, 9403056.
-
(1997)
Genomics
, vol.46
, pp. 37-45
-
-
Huang, X.1
Adams, M.D.2
Zhou, H.3
Kerlavage, A.R.4
-
71
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
187518, 11932250
-
Kent WJ. BLAT-the BLAST-like alignment tool. Genome Res 2002, 12:656-664. 187518, 11932250.
-
(2002)
Genome Res
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
72
-
-
0034065724
-
Ab initio gene finding in Drosophila genomic DNA
-
10.1101/gr.10.4.516, 310882, 10779491
-
Salamov AA, Solovyev VV. Ab initio gene finding in Drosophila genomic DNA. Genome Res 2000, 10:516-522. 10.1101/gr.10.4.516, 310882, 10779491.
-
(2000)
Genome Res
, vol.10
, pp. 516-522
-
-
Salamov, A.A.1
Solovyev, V.V.2
-
73
-
-
23144444421
-
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints
-
10.1093/nar/gki458, 1160219, 15980513
-
Stanke M, Morgenstern B. AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res 2005, 33:W465-W467. 10.1093/nar/gki458, 1160219, 15980513.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Stanke, M.1
Morgenstern, B.2
-
74
-
-
8844252293
-
TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders
-
10.1093/bioinformatics/bth315, 15145805
-
Majoros WH, Pertea M, Salzberg SL. TigrScan and GlimmerHMM: two open source ab initio eukaryotic gene-finders. Bioinformatics 2004, 20:2878-2879. 10.1093/bioinformatics/bth315, 15145805.
-
(2004)
Bioinformatics
, vol.20
, pp. 2878-2879
-
-
Majoros, W.H.1
Pertea, M.2
Salzberg, S.L.3
-
75
-
-
2942544417
-
Gene finding in novel genomes
-
10.1186/1471-2105-5-59, 421630, 15144565
-
Korf I. Gene finding in novel genomes. BMC Bioinformatics 2004, 5:59. 10.1186/1471-2105-5-59, 421630, 15144565.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 59
-
-
Korf, I.1
-
76
-
-
57149099395
-
Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training
-
10.1101/gr.081612.108, 2593577, 18757608
-
Ter-Hovhannisyan V, Lomsadze A, Chernoff YO, Borodovsky M. Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training. Genome Res 2008, 18:1979-1990. 10.1101/gr.081612.108, 2593577, 18757608.
-
(2008)
Genome Res
, vol.18
, pp. 1979-1990
-
-
Ter-Hovhannisyan, V.1
Lomsadze, A.2
Chernoff, Y.O.3
Borodovsky, M.4
-
77
-
-
33846880338
-
Using geneid to identify genes
-
New York: John Wiley and Sons Inc, Baxevanis AD, Davison DB, Unit 4.3
-
Blanco E, Parra G, Guigó R. Using geneid to identify genes. Current Protocols in Bioinformatics 2002, New York: John Wiley and Sons Inc, Baxevanis AD, Davison DB, Unit 4.3.
-
(2002)
Current Protocols in Bioinformatics
-
-
Blanco, E.1
Parra, G.2
Guigó, R.3
-
78
-
-
78651324347
-
The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored
-
10.1093/nar/gkq973, 3013807, 21045058
-
Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ, von Mering C. The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res 2011, 39:D561-D568. 10.1093/nar/gkq973, 3013807, 21045058.
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
Simonovic, M.4
Roth, A.5
Minguez, P.6
Doerks, T.7
Stark, M.8
Muller, J.9
Bork, P.10
Jensen, L.J.11
von Mering, C.12
-
79
-
-
0037249501
-
PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification
-
10.1093/nar/gkg115, 165562, 12520017
-
Thomas PD, Kejariwal A, Campbell MJ, Mi H, Diemer K, Guo N, Ladunga I, Ulitsky-Lazareva B, Muruganujan A, Rabkin S, Vandergriff JA, Doremieux O. PANTHER: a browsable database of gene products organized by biological function, using curated protein family and subfamily classification. Nucleic Acids Res 2003, 31:334-341. 10.1093/nar/gkg115, 165562, 12520017.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 334-341
-
-
Thomas, P.D.1
Kejariwal, A.2
Campbell, M.J.3
Mi, H.4
Diemer, K.5
Guo, N.6
Ladunga, I.7
Ulitsky-Lazareva, B.8
Muruganujan, A.9
Rabkin, S.10
Vandergriff, J.A.11
Doremieux, O.12
-
80
-
-
41149146697
-
The PRINTS protein fingerprint database: functional and evolutionary applications
-
New Jersey: John Wiley and Sons Ltd, Dunn M, Jorde L, Little P, Subramaniam A
-
Attwood TK, Mitchell AL, Gaulton A, Moulton G, Tabernero L. The PRINTS protein fingerprint database: functional and evolutionary applications. Encyclopaedia of Genetics, Genomics, Proteomics and Bioinformatics 2006, New Jersey: John Wiley and Sons Ltd, Dunn M, Jorde L, Little P, Subramaniam A.
-
(2006)
Encyclopaedia of Genetics, Genomics, Proteomics and Bioinformatics
-
-
Attwood, T.K.1
Mitchell, A.L.2
Gaulton, A.3
Moulton, G.4
Tabernero, L.5
-
81
-
-
75549087533
-
PROSITE, a protein domain database for functional characterization and annotation
-
10.1093/nar/gkp885, 2808866, 19858104
-
Sigrist CJA, Cerutti L, de Castro E, Langendijk-Genevaux PS, Bulliard V, Bairoch A, Hulo N. PROSITE, a protein domain database for functional characterization and annotation. Nucleic Acids Res 2010, 38:D161-D166. 10.1093/nar/gkp885, 2808866, 19858104.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Sigrist, C.J.A.1
Cerutti, L.2
de Castro, E.3
Langendijk-Genevaux, P.S.4
Bulliard, V.5
Bairoch, A.6
Hulo, N.7
-
82
-
-
84862221167
-
SMART 7: recent updates to the protein domain annotation resource
-
Letunic I, Doerks T, Bork P. SMART 7: recent updates to the protein domain annotation resource. Nucleic Acids Res 2012, 40:D303-D305.
-
(2012)
Nucleic Acids Res
, vol.40
-
-
Letunic, I.1
Doerks, T.2
Bork, P.3
-
83
-
-
0030854739
-
TRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence
-
146525, 9023104
-
Lowe TM, Eddy SR. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997, 25:955-964. 146525, 9023104.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 955-964
-
-
Lowe, T.M.1
Eddy, S.R.2
-
84
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
85
-
-
80053345905
-
SignalP 4.0: discriminating signal peptides from transmembrane regions
-
10.1038/nmeth.1701, 21959131
-
Petersen TN, Brunak S, von Heijne G, Nielsen H. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 2011, 8:785-786. 10.1038/nmeth.1701, 21959131.
-
(2011)
Nat Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.N.1
Brunak, S.2
von Heijne, G.3
Nielsen, H.4
-
86
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
10.1126/science.252.5009.1162, 17797907
-
Lupas A, Van Dyke M, Stock J. Predicting coiled coils from protein sequences. Science 1991, 252:1162-1164. 10.1126/science.252.5009.1162, 17797907.
-
(1991)
Science
, vol.252
, pp. 1162-1164
-
-
Lupas, A.1
Van Dyke, M.2
Stock, J.3
-
87
-
-
2642654227
-
MPW: the metabolic pathways database
-
10.1093/nar/26.1.43, 147231, 9407141
-
Selkov E, Grechkin Y, Mikhailova N, Selkov E. MPW: the metabolic pathways database. Nucleic Acids Res 1998, 26:43-45. 10.1093/nar/26.1.43, 147231, 9407141.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 43-45
-
-
Selkov, E.1
Grechkin, Y.2
Mikhailova, N.3
Selkov, E.4
-
88
-
-
0141519279
-
OrthoMCL: identification of ortholog groups for eukaryotic genomes
-
10.1101/gr.1224503, 403725, 12952885
-
Li L, Stoeckert CJ, Roos DS. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 2003, 13:2178-2189. 10.1101/gr.1224503, 403725, 12952885.
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.J.2
Roos, D.S.3
-
89
-
-
77950806408
-
New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0
-
10.1093/sysbio/syq010, 20525638
-
Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst Biol 2010, 59:307-321. 10.1093/sysbio/syq010, 20525638.
-
(2010)
Syst Biol
, vol.59
, pp. 307-321
-
-
Guindon, S.1
Dufayard, J.F.2
Lefort, V.3
Anisimova, M.4
Hordijk, W.5
Gascuel, O.6
-
90
-
-
84874017963
-
-
Rubber Genome Browser http://bioinfo.ccbusm.edu.my/cgi-bin/gb2/gbrowse/Rubber/.
-
Rubber Genome Browser
-
-
|