Genome-wide analysis of the WRKY gene family in physic nut (Jatropha curcas L.)

Gene

Volumn 524, Issue 2, 2013, Pages 124-132

  Xiong, Wangdan ^a,b   Xu, Xueqin ^a,b   Zhang, Lin ^a,b   Wu, Pingzhi ^a   Chen, Yaping ^a   Li, Meiru ^a   Jiang, Huawu ^a   Wu, Guojiang ^a  

^a SOUTH CHINA INSTITUTE OF BOTANY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

Abiotic stress; Evolution; Gene expression; Physic nut; WRKY transcription factor

Indexed keywords

NITROGEN; PHOSPHATE;

ABIOTIC STRESS; AMINO ACID SEQUENCE; ARTICLE; DROUGHT; GENE DUPLICATION; GENE IDENTIFICATION; GENETIC ASSOCIATION; JATROPHA CURCAS; MOLECULAR CLONING; MULTIGENE FAMILY; PHYLOGENY; PRIORITY JOURNAL; RICINUS COMMUNIS; SALINITY; STARVATION;

AMINO ACID SEQUENCE; ARABIDOPSIS; DROUGHTS; GENE DUPLICATION; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; JATROPHA; MOLECULAR SEQUENCE DATA; MULTIGENE FAMILY; ORYZA SATIVA; PHYLOGENY; PLANT PROTEINS; PLANT ROOTS; RNA, PLANT; SODIUM CHLORIDE; STRESS, PHYSIOLOGICAL; TRANSCRIPTION FACTORS;

ARABIDOPSIS; JATROPHA CURCAS; RICINUS COMMUNIS;

EID: 84878653880     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2013.04.047     Document Type: Article

References (34)

1. Agarwal P., Reddy M.P., Chikara J. WRKY: its structure, evolutionary relationship, DNA-binding selectivity, role in stress tolerance and development of plants. Mol. Biol. Rep. 2011, 38:3883-3896.
2. Babu M.M., Iyer L.M., Balaji S., Aravind L. The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons. Nucleic Acids Res. 2006, 34:6505-6520.
3. Besseau S., Li J., Palva E.T. WRKY54 and WRKY70 co-operate as negative regulators of leaf senescence in Arabidopsis thaliana. J. Exp. Bot. 2012, 63:2667-2679.
4. Chan A.P., et al. Draft genome sequence of the oilseed species Ricinus communis. Nat. Biotechnol. 2010, 28:951-956.
5. Chang S., Puryear J., Cairney J. A simple and efficient method for isolating RNA from pine trees. Plant Mol. Biol. Rep. 1993, 11:113-116.
6. Chen Y.F., Li L.Q., Xu Q., Kong Y.H., Wang H., Wu W.H. The WRKY6 transcription factor modulates PHOSPHATE1 expression in response to low Pi stress in Arabidopsis. Plant Cell 2009, 21:3554-3566.
7. Chen L., Song Y., Li S., Zhang L., Zou C., Yu D. The role of WRKY transcription factors in plant abiotic stresses. BBA-Gene Regul. Mech. 2012, 1819:120-128.
8. Devaiah B.N., Karthikeyan A.S., Raghothama K.G. WRKY75 transcription factor is a modulator of phosphate acquisition and root development in Arabidopsis. Plant Physiol. 2007, 143:1789-1801.
9. Eulgem T., Somssich I.E. Networks of WRKY transcription factors in defense signaling. Curr. Opin. Plant Biol. 2007, 10:366-371.
10. Eulgem T., Rushton P.J., Robatzek S., Somssich I.E. The WRKY superfamily of plant transcription factors. Trends Plant Sci. 2000, 5:199-206.
11. Gonzalez A., Mendenhall J., Huo Y., Lloyd A. TTG1 complex MYBs, MYB5 and TT2, control outer seed coat differentiation. Dev. Biol. 2009, 325:412-421.
12. Grunewald W., et al. Transcription factor WRKY23 assists auxin distribution patterns during Arabidopsis root development through local control on flavonol biosynthesis. Proc. Natl. Acad. Sci. U. S. A. 2012, 109:1554-1559.
13. He H.S., et al. Genome-wide survey and characterization of the WRKY gene family in Populus trichocarpa. Plant Cell Rep. 2012, 31:1199-1217.
14. Ishiguro S., Nakamura K. Characterization of a cDNA encoding a novel DNA-binding protein, SPF1, that recognizes SP8 sequences in the 5' upstream regions of genes coding for sporamin and beta-amylase from sweet-potato. Mol. Gen. Genet. 1994, 244:563-571.
15. Jiang Y.Q., Deyholos M.K. Functional characterization of Arabidopsis NaCl-inducible WRKY25 and WRKY33 transcription factors in abiotic stresses. Plant Mol. Biol. 2009, 69:91-105.
16. Jiang H.W., et al. Global analysis of gene expression profiles in developing physic nut (Jatropha curcas L.) seeds. PLoS One 2012, 7:e36522.
17. Johnson C.S., Kolevski B., Smyth D.R. TRANSPARENT TESTA GLABRA2, a trichome and seed coat development gene of Arabidopsis, encodes a WRKY transcription factor. Plant Cell 2002, 14:1359-1375.
18. Li S.J., Fu Q.T., Chen L.G., Huang W.D., Yu D.Q. Arabidopsis thaliana WRKY25, WRKY26, and WRKY33 coordinate induction of plant thermotolerance. Planta 2011, 233:1237-1252.
19. Ling J., et al. Genome-wide analysis of WRKY gene family in Cucumis sativus. BMC Genomics 2011, 12:471.
20. Luo M., Dennis E.S., Berger F., Peacock W.J., Chaudhury A. MINISEED3 (MINI3), a WRKY family gene, and HAIKU2 (IKU2), a leucine-rich repeat (LRR) KINASE gene, are regulators of seed size in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 2005, 102:17531-17536.
21. Makkar H.P.S., Becker K., Sporer F., Wink M. Studies on nutritive potential and toxic constituents of different provenances of Jatropha curcas. J. Agric. Food Chem. 1997, 45:3152-3157.
22. Marchler-Bauer A., et al. CDD: a conserved domain database for the functional annotation of proteins. Nucleic Acids Res. 2011, 39:225-229.
23. Natarajan P., Parani M. De novo assembly and transcriptome analysis of five major tissues of Jatropha curcas L. using GS FLX titanium platform of 454 pyrosequencing. BMC Genomics 2011, 12:191.
24. Qiu Y.P., Yu D.Q. Over-expression of the stress-induced OsWRKY45 enhances disease resistance and drought tolerance in Arabidopsis. Environ. Exp. Bot. 2008, 65:35-47.
25. Ross C.A., Liu Y., Shen Q.J. The WRKY gene family in rice (Oryza sativa). J. Integr. Plant Biol. 2007, 49:827-842.
26. Sato S., et al. Sequence analysis of the genome of an oil-bearing tree, Jatropha curcas L. DNA Res. 2011, 18:65-76.
27. Sun C.X., Palmqvist S., Olsson H., Borén M., Ahlandsberg S., Jansson C. A novel WRKY transcription factor, SUSIBA2, participates in sugar signaling in barley by binding to the sugar-responsive elements of the iso1 promoter. Plant Cell 2003, 15:2076-2092.
28. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
29. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25:4876-4882.
30. van Verk M.C., Pappaioannou D., Neeleman L., Bol J.F., Linthorst H.J.M. A novel WRKY transcription factor is required for induction of PR-1a gene expression by salicylic acid and bacterial elicitors. Plant Physiol. 2008, 146:1983-1995.
31. Wu X.L., Shiroto Y., Kishitani S., Ito Y., Toriyama K. Enhanced heat and drought tolerance in transgenic rice seedlings overexpressing OsWRKY11 under the control of HSP101 promoter. Plant Cell Rep. 2009, 28:21-30.
32. Zhang Y.J., Wang L.J. The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants. BMC Evol. Biol. 2005, 5:1.
33. Zhang J., Peng Y.L., Guo Z.J. Constitutive expression of pathogen-inducible OsWRKY31 enhances disease resistance and affects root growth and auxin response in transgenic rice plants. Cell Res. 2008, 18:508-521.
34. Zhou Q.Y., et al. Soybean WRKY-type transcription factor genes, GmWRKY13, GmWRKY21, and GmWRKY54, confer differential tolerance to abiotic stresses in transgenic Arabidopsis plants. Plant Biotechnol. J. 2008, 6:486-503.