-
1
-
-
0028154142
-
Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico
-
Arévalo E., Davis S.K., Sites J.W. Mitochondrial DNA sequence divergence and phylogenetic relationships among eight chromosome races of the Sceloporus grammicus complex (Phrynosomatidae) in central Mexico. Syst. Biol. 1994, 43:387-418.
-
(1994)
Syst. Biol.
, vol.43
, pp. 387-418
-
-
Arévalo, E.1
Davis, S.K.2
Sites, J.W.3
-
2
-
-
84865475040
-
Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty
-
Baele G., Lemey P., Bedford T., Rambaut A., Suchard M.A., Alekseyenko A.V. Improving the accuracy of demographic and molecular clock model comparison while accommodating phylogenetic uncertainty. Mol. Biol. Evol. 2012, 29:2157-2167.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 2157-2167
-
-
Baele, G.1
Lemey, P.2
Bedford, T.3
Rambaut, A.4
Suchard, M.A.5
Alekseyenko, A.V.6
-
3
-
-
1642285792
-
The incomplete natural history of mitochondria
-
Ballard J.W.O., Whitlock M.C. The incomplete natural history of mitochondria. Mol. Ecol. 2004, 13:729-744.
-
(2004)
Mol. Ecol.
, vol.13
, pp. 729-744
-
-
Ballard, J.W.O.1
Whitlock, M.C.2
-
4
-
-
84873085153
-
Phylogeography of the widespread African puff adder (Bitis arietans) reveals multiple Pleistocene refugia in southern Africa
-
Barlow A., Baker K., Hendry C.R., Peppin L., Phelps T., Tolley K.A., Wüster C.E., Wüster W. Phylogeography of the widespread African puff adder (Bitis arietans) reveals multiple Pleistocene refugia in southern Africa. Mol. Ecol. 2013, 22:1134-1157.
-
(2013)
Mol. Ecol.
, vol.22
, pp. 1134-1157
-
-
Barlow, A.1
Baker, K.2
Hendry, C.R.3
Peppin, L.4
Phelps, T.5
Tolley, K.A.6
Wüster, C.E.7
Wüster, W.8
-
5
-
-
33646750712
-
Phylogenetic relationships of southern African geckos in the Pachydactylus group (Squamata: Gekkonidae)
-
Bauer A.M., Lamb T. Phylogenetic relationships of southern African geckos in the Pachydactylus group (Squamata: Gekkonidae). Afr. J. Herpetol. 2005, 54:105-129.
-
(2005)
Afr. J. Herpetol.
, vol.54
, pp. 105-129
-
-
Bauer, A.M.1
Lamb, T.2
-
6
-
-
84904299666
-
A new species of the Agama agama group (Squamata: Agamidae) from western Kenya, East Africa, with comments on Agama lionotus Boulenger, 1896
-
Böhme W., Wagner P., Malonza P., Lötters S., Köhler J. A new species of the Agama agama group (Squamata: Agamidae) from western Kenya, East Africa, with comments on Agama lionotus Boulenger, 1896. Russ. J. Herpetol. 2005, 12:143-150.
-
(2005)
Russ. J. Herpetol.
, vol.12
, pp. 143-150
-
-
Böhme, W.1
Wagner, P.2
Malonza, P.3
Lötters, S.4
Köhler, J.5
-
8
-
-
77649243408
-
When trees grow too long: investigating the causes of highly inaccurate Bayesian branch-length estimates
-
Brown J.M., Hedtke S.M., Lemmon A.R., Lemmon E.M. When trees grow too long: investigating the causes of highly inaccurate Bayesian branch-length estimates. Syst. Biol. 2010, 59:145-161.
-
(2010)
Syst. Biol.
, vol.59
, pp. 145-161
-
-
Brown, J.M.1
Hedtke, S.M.2
Lemmon, A.R.3
Lemmon, E.M.4
-
9
-
-
79960028708
-
The impact of gene-tree/species-tree discordance on diversification-rate estimation
-
Burbrink F.T., Pyron R.A. The impact of gene-tree/species-tree discordance on diversification-rate estimation. Evolution 2011, 65:1851-1861.
-
(2011)
Evolution
, vol.65
, pp. 1851-1861
-
-
Burbrink, F.T.1
Pyron, R.A.2
-
10
-
-
84868146633
-
Evidence for determinism in species diversification and contingency in phenotypic evolution during adaptive radiation
-
Burbrink F.T., Chen X., Myers E.A., Brandley M.C., Pyron R.A. Evidence for determinism in species diversification and contingency in phenotypic evolution during adaptive radiation. Proc. R. Soc. B 2012, 279:4817-4826.
-
(2012)
Proc. R. Soc. B
, vol.279
, pp. 4817-4826
-
-
Burbrink, F.T.1
Chen, X.2
Myers, E.A.3
Brandley, M.C.4
Pyron, R.A.5
-
11
-
-
85053551548
-
Linear models
-
Wadsworth, Pacific Grove, CA, J.M. Chambers, T.J. Hastie (Eds.)
-
Chambers J.M. Linear models. Statistical Models in S 1992, 95-144. Wadsworth, Pacific Grove, CA. J.M. Chambers, T.J. Hastie (Eds.).
-
(1992)
Statistical Models in S
, pp. 95-144
-
-
Chambers, J.M.1
-
12
-
-
84865382153
-
More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs
-
Crawford N.G., Faircloth B.C., McCormack J.E., Brumfield R.T., Winker K., Glenn T.C. More than 1000 ultraconserved elements provide evidence that turtles are the sister group of archosaurs. Biol. Lett. 2012, 8:783-786.
-
(2012)
Biol. Lett.
, vol.8
, pp. 783-786
-
-
Crawford, N.G.1
Faircloth, B.C.2
McCormack, J.E.3
Brumfield, R.T.4
Winker, K.5
Glenn, T.C.6
-
13
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 2007(7):214.
-
(2007)
BMC Evol. Biol.
, vol.2007
, Issue.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
14
-
-
13244255415
-
MUSCLE: a multiple sequence alignment method with reduced time and space complexity
-
Edgar R.C. MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 2004, 5:113.
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.C.1
-
15
-
-
3042666256
-
MUSCLE: a multiple sequence alignment with high accuracy and high throughput
-
Edgar R.C. MUSCLE: a multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004, 32:1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
16
-
-
84859548731
-
Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales
-
Faircloth B.C., McCormack J.E., Crawford N.G., Harvey M.G., Brumfield R.T., Glenn T.C. Ultraconserved elements anchor thousands of genetic markers spanning multiple evolutionary timescales. Syst. Biol. 2012, 61:717-726.
-
(2012)
Syst. Biol.
, vol.61
, pp. 717-726
-
-
Faircloth, B.C.1
McCormack, J.E.2
Crawford, N.G.3
Harvey, M.G.4
Brumfield, R.T.5
Glenn, T.C.6
-
17
-
-
12044255022
-
Phylogenetic analysis of covariance by computer simulation
-
Garland T., Dickerman A.W., Janis C.M., Jones J.A. Phylogenetic analysis of covariance by computer simulation. Syst. Biol. 1993, 42:265-292.
-
(1993)
Syst. Biol.
, vol.42
, pp. 265-292
-
-
Garland, T.1
Dickerman, A.W.2
Janis, C.M.3
Jones, J.A.4
-
18
-
-
81255173620
-
Systematics of north African Agama (Reptilia: Agamidae): a new species from the central Saharan mountains
-
Geniez P., Padial J.M., Crochet P.-A. Systematics of north African Agama (Reptilia: Agamidae): a new species from the central Saharan mountains. Zootaxa 2011, 3098:26-46.
-
(2011)
Zootaxa
, vol.3098
, pp. 26-46
-
-
Geniez, P.1
Padial, J.M.2
Crochet, P.-A.3
-
19
-
-
59849113821
-
Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing
-
Gnirke A., Melnikov A., Maguire J., Rogov P., LeProust E.M., et al. Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat. Biotechnol. 2009, 27:182-189.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 182-189
-
-
Gnirke, A.1
Melnikov, A.2
Maguire, J.3
Rogov, P.4
LeProust, E.M.5
-
20
-
-
84863091395
-
Phylogeny of North African Agama lizards (Reptilia: Agamidae) and the role of the Sahara desert in vertebrate speciation Mol
-
Gonçalves D.V., Brito J.C., Crochet P.-A., Geniez P., Padial J.M., Harris D.J. Phylogeny of North African Agama lizards (Reptilia: Agamidae) and the role of the Sahara desert in vertebrate speciation Mol. Phylogenet. Evol. 2012, 64:582-591.
-
(2012)
Phylogenet. Evol.
, vol.64
, pp. 582-591
-
-
Gonçalves, D.V.1
Brito, J.C.2
Crochet, P.-A.3
Geniez, P.4
Padial, J.M.5
Harris, D.J.6
-
21
-
-
0003228486
-
Nigerian lizards of the genus Agama (Sauria: Agamidae)
-
Grandison A.G.C. Nigerian lizards of the genus Agama (Sauria: Agamidae). Bull. Br. Mus. Nat. Hist. Zool. 1968, 17:67-90.
-
(1968)
Bull. Br. Mus. Nat. Hist. Zool.
, vol.17
, pp. 67-90
-
-
Grandison, A.G.C.1
-
22
-
-
0043023771
-
Tempo and mode of evolutionary radiation in iguanian lizards
-
Harmon L.J., Schulte J.A., Larson A., Losos J.B. Tempo and mode of evolutionary radiation in iguanian lizards. Science 2003, 301:961-964.
-
(2003)
Science
, vol.301
, pp. 961-964
-
-
Harmon, L.J.1
Schulte, J.A.2
Larson, A.3
Losos, J.B.4
-
23
-
-
37549027209
-
GEIGER: investigating evolutionary radiations
-
Harmon L.J., Weir J.T., Brock C.D., Glor R.E., Challenger W. GEIGER: investigating evolutionary radiations. Bioinformatics 2008, 24(1):129-131.
-
(2008)
Bioinformatics
, vol.24
, Issue.1
, pp. 129-131
-
-
Harmon, L.J.1
Weir, J.T.2
Brock, C.D.3
Glor, R.E.4
Challenger, W.5
-
24
-
-
0344171209
-
Some observations concerning the age of the dunes in the western Kalahari and palaeoclimatic implications
-
Heine K. Some observations concerning the age of the dunes in the western Kalahari and palaeoclimatic implications. Palaeoecol. Afr. 1989, 21:161-178.
-
(1989)
Palaeoecol. Afr.
, vol.21
, pp. 161-178
-
-
Heine, K.1
-
25
-
-
77249086587
-
Bayesian inference of species trees from multilocus data
-
Heled J., Drummond A.J. Bayesian inference of species trees from multilocus data. Mol. Biol. Evol. 2010, 27:570-580.
-
(2010)
Mol. Biol. Evol.
, vol.27
, pp. 570-580
-
-
Heled, J.1
Drummond, A.J.2
-
26
-
-
0012860185
-
Zur Ökologie und Vebreitung wenig bekannter Agamen Westafrikas (Reptilia: Sauria: Agamidae)
-
Joger U. Zur Ökologie und Vebreitung wenig bekannter Agamen Westafrikas (Reptilia: Sauria: Agamidae). Salamandra 1979, 15:31-52.
-
(1979)
Salamandra
, vol.15
, pp. 31-52
-
-
Joger, U.1
-
27
-
-
21244482165
-
Global patterns of plant diversity and floristic knowledge
-
Kier G., Mutke J., Dinerstein E., Ricketts T.H., Küper W., Kreft H., Barhlott W. Global patterns of plant diversity and floristic knowledge. J. Biogeogr. 2005, 32:1107-1116.
-
(2005)
J. Biogeogr.
, vol.32
, pp. 1107-1116
-
-
Kier, G.1
Mutke, J.2
Dinerstein, E.3
Ricketts, T.H.4
Küper, W.5
Kreft, H.6
Barhlott, W.7
-
28
-
-
84857244374
-
Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform
-
Kircher M., Sawyer S., Meyer M. Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform. Nucleic Acids Res. 2011, 2011:1-8.
-
(2011)
Nucleic Acids Res.
, vol.2011
, pp. 1-8
-
-
Kircher, M.1
Sawyer, S.2
Meyer, M.3
-
29
-
-
84860824782
-
Czenozoic imprints on the phylogenetic structure of palm species assemblages worldwide
-
Kissling W.D., Eiserhardt W.L., Baker W.J., Borchsenius F., Couvreur T.L.P., Balslev H., Svenning J.-C. Czenozoic imprints on the phylogenetic structure of palm species assemblages worldwide. Proc. Natl. Acad. Sci. USA 2012, 109:7379-7384.
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. 7379-7384
-
-
Kissling, W.D.1
Eiserhardt, W.L.2
Baker, W.J.3
Borchsenius, F.4
Couvreur, T.L.P.5
Balslev, H.6
Svenning, J.-C.7
-
30
-
-
84861380450
-
PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analysis
-
Lanfear R., Calcott B., Ho S.Y.W., Guindon S. PartitionFinder: combined selection of partitioning schemes and substitution models for phylogenetic analysis. Mol. Biol. Evol. 2012, 29:1695-1701.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 1695-1701
-
-
Lanfear, R.1
Calcott, B.2
Ho, S.Y.W.3
Guindon, S.4
-
31
-
-
70649110122
-
Species tree discordance traces to phylogeographic clade boundaries in North American fence lizards (Sceloporus)
-
Leaché A.D. Species tree discordance traces to phylogeographic clade boundaries in North American fence lizards (Sceloporus). Syst. Biol. 2009, 58:547-559.
-
(2009)
Syst. Biol.
, vol.58
, pp. 547-559
-
-
Leaché, A.D.1
-
32
-
-
84862753260
-
Phylogeny of the genus Agama based on mitochondrial DNA sequence data
-
Leaché A.D., Chong R.A., Papenfuss T.J., Wagner P., Böhme W., Schmitz A., Rödel M.-O., LeBreton M., Ineich I., Chirio L., Bauer A., Eniang E.A., Baha El Din S. Phylogeny of the genus Agama based on mitochondrial DNA sequence data. Bonn. zool. Beitr. 2009, 56:273-278.
-
(2009)
Bonn. zool. Beitr.
, vol.56
, pp. 273-278
-
-
Leaché, A.D.1
Chong, R.A.2
Papenfuss, T.J.3
Wagner, P.4
Böhme, W.5
Schmitz, A.6
Rödel, M.-O.7
LeBreton, M.8
Ineich, I.9
Chirio, L.10
Bauer, A.11
Eniang, E.A.12
Baha El Din, S.13
-
33
-
-
84888626247
-
High-throughput genomic data in systematics and phylogenetics
-
Lemmon E.M., Lemmon A.R. High-throughput genomic data in systematics and phylogenetics. Annu. Rev. Ecol. Evol. Syst. 2013, 44:99-121.
-
(2013)
Annu. Rev. Ecol. Evol. Syst.
, vol.44
, pp. 99-121
-
-
Lemmon, E.M.1
Lemmon, A.R.2
-
34
-
-
84865266483
-
Anchored hybrid enrichment for massively high-throughput phylogenomics
-
Lemmon A.R., Emme S., Lemmon E.M. Anchored hybrid enrichment for massively high-throughput phylogenomics. Syst. Biol. 2012, 61:727-744.
-
(2012)
Syst. Biol.
, vol.61
, pp. 727-744
-
-
Lemmon, A.R.1
Emme, S.2
Lemmon, E.M.3
-
35
-
-
84878973869
-
Capturing protein-coding genes across highly divergent species
-
Li C., Hofreiter M., Straube N., Corrigan S., Naylor G.J.P. Capturing protein-coding genes across highly divergent species. Biotechniques 2013, 54:321-326.
-
(2013)
Biotechniques
, vol.54
, pp. 321-326
-
-
Li, C.1
Hofreiter, M.2
Straube, N.3
Corrigan, S.4
Naylor, G.J.P.5
-
36
-
-
84862651583
-
The partitioning of Africa: statistically defined biogeographical regions in sub-Saharan Africa
-
Linder H.P., de Klerk H.M., Born J., Burgess N.D., Fjeldså J., Rahbek C. The partitioning of Africa: statistically defined biogeographical regions in sub-Saharan Africa. J. Biogeogr. 2012, 39:1189-1205.
-
(2012)
J. Biogeogr.
, vol.39
, pp. 1189-1205
-
-
Linder, H.P.1
de Klerk, H.M.2
Born, J.3
Burgess, N.D.4
Fjeldså, J.5
Rahbek, C.6
-
37
-
-
67649240664
-
Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees
-
Liu K., Raghavan S., Nelesen S., Linder C.R., Warnow T. Rapid and accurate large-scale coestimation of sequence alignments and phylogenetic trees. Science 2009, 324:1561-1564.
-
(2009)
Science
, vol.324
, pp. 1561-1564
-
-
Liu, K.1
Raghavan, S.2
Nelesen, S.3
Linder, C.R.4
Warnow, T.5
-
38
-
-
68049099068
-
Coalescent methods for estimating phylogenetic trees
-
Liu L., Yu L., Kubatko L., Pearl D.K., Edwards S.V. Coalescent methods for estimating phylogenetic trees. Mol. Phyl. Evol. 2009, 53:320-328.
-
(2009)
Mol. Phyl. Evol.
, vol.53
, pp. 320-328
-
-
Liu, L.1
Yu, L.2
Kubatko, L.3
Pearl, D.K.4
Edwards, S.V.5
-
39
-
-
84555194934
-
SATé-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees
-
Liu K., Warnow T.J., Holder M.T., Nelesen S.M., Yu J., Stamatakis A.P., Linder C.R. SATé-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees. Syst. Biol. 2011, 61:90-106.
-
(2011)
Syst. Biol.
, vol.61
, pp. 90-106
-
-
Liu, K.1
Warnow, T.J.2
Holder, M.T.3
Nelesen, S.M.4
Yu, J.5
Stamatakis, A.P.6
Linder, C.R.7
-
40
-
-
84864281272
-
Comparative phylogeography of African savannah ungulates
-
Lorenzen E.D., Heller H., Siegismund H.R. Comparative phylogeography of African savannah ungulates. Mol. Ecol. 2012, 21:3656-3670.
-
(2012)
Mol. Ecol.
, vol.21
, pp. 3656-3670
-
-
Lorenzen, E.D.1
Heller, H.2
Siegismund, H.R.3
-
41
-
-
0034350424
-
Evaluating trans-Tethys migration: an example using acrodont lizard phylogenetics
-
Macey J.R., Schulte J.A., Larson A., Ananjeva N.B., Wang Y., Pethiyagoda R., Rastegar-Pouyani N., Papenfuss T.J. Evaluating trans-Tethys migration: an example using acrodont lizard phylogenetics. Syst. Biol. 2000, 49:233-256.
-
(2000)
Syst. Biol.
, vol.49
, pp. 233-256
-
-
Macey, J.R.1
Schulte, J.A.2
Larson, A.3
Ananjeva, N.B.4
Wang, Y.5
Pethiyagoda, R.6
Rastegar-Pouyani, N.7
Papenfuss, T.J.8
-
42
-
-
33646505930
-
The complete mitochondrial genome of an agamid lizard from the Afro-Asian subfamily agaminae and the phylogenetic position of Bufoniceps and Xenagama
-
Macey J.R., Schulte J.A., Fong J.J., Das I., Papenfuss T.J. The complete mitochondrial genome of an agamid lizard from the Afro-Asian subfamily agaminae and the phylogenetic position of Bufoniceps and Xenagama. Mol. Phylogenet. Evol. 2006, 39:881-886.
-
(2006)
Mol. Phylogenet. Evol.
, vol.39
, pp. 881-886
-
-
Macey, J.R.1
Schulte, J.A.2
Fong, J.J.3
Das, I.4
Papenfuss, T.J.5
-
43
-
-
72049096137
-
Cryptic failure of partitioned Bayesian phylogenetic analyses: lost in the land of long trees
-
Marshall D.C. Cryptic failure of partitioned Bayesian phylogenetic analyses: lost in the land of long trees. Syst. Biol. 2010, 59:108-117.
-
(2010)
Syst. Biol.
, vol.59
, pp. 108-117
-
-
Marshall, D.C.1
-
44
-
-
78650931246
-
Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays
-
McCormack J.E., Heled D., Delaney K.S., Peterson A.T., Knowles L.L. Calibrating divergence times on species trees versus gene trees: implications for speciation history of Aphelocoma jays. Evolution 2010, 65:184-202.
-
(2010)
Evolution
, vol.65
, pp. 184-202
-
-
McCormack, J.E.1
Heled, D.2
Delaney, K.S.3
Peterson, A.T.4
Knowles, L.L.5
-
45
-
-
84873084821
-
Applications of next-generation sequencing to phylogeography and phylogenetics
-
McCormack J.E., Hird S.M., Zellmer A.J., Carstens B.C., Brumfield R.T. Applications of next-generation sequencing to phylogeography and phylogenetics. Mol. Phylogenet. Evol. 2013, 66:526-538.
-
(2013)
Mol. Phylogenet. Evol.
, vol.66
, pp. 526-538
-
-
McCormack, J.E.1
Hird, S.M.2
Zellmer, A.J.3
Carstens, B.C.4
Brumfield, R.T.5
-
46
-
-
84874708818
-
A molecular study of the genus Agama (Squamata: Agamidae) in West Africa, with description of two new species and a review of the taxonomy, geographic distribution, and ecology of currently recognized species
-
Mediannikov O., Trape S., Trape J.-F. A molecular study of the genus Agama (Squamata: Agamidae) in West Africa, with description of two new species and a review of the taxonomy, geographic distribution, and ecology of currently recognized species. Russ. J. Herpetol. 2012, 19:115-142.
-
(2012)
Russ. J. Herpetol.
, vol.19
, pp. 115-142
-
-
Mediannikov, O.1
Trape, S.2
Trape, J.-F.3
-
47
-
-
84897062906
-
Why does diversification slow down?
-
Moen D., Morlon H. Why does diversification slow down?. Trends Ecol. Evol. 2014, 29:190-197.
-
(2014)
Trends Ecol. Evol.
, vol.29
, pp. 190-197
-
-
Moen, D.1
Morlon, H.2
-
48
-
-
0039711958
-
Merksmalsvariation und taxonomische Stellung von Agama doriae Boulenger, 1885 und Agama benueensis Monard, 1951 (Reptilia: Agamidae) aus dem Sudangürtel Afrikas
-
Moody S.M., Böhme W. Merksmalsvariation und taxonomische Stellung von Agama doriae Boulenger, 1885 und Agama benueensis Monard, 1951 (Reptilia: Agamidae) aus dem Sudangürtel Afrikas. Bonn. zool. Beitr. 1984, 35:107-128.
-
(1984)
Bonn. zool. Beitr.
, vol.35
, pp. 107-128
-
-
Moody, S.M.1
Böhme, W.2
-
49
-
-
33745861739
-
Dispersal and vicariance. the complex evolutionary history of boid snakes
-
Noonan B.P., Chippindale P.T. Dispersal and vicariance. the complex evolutionary history of boid snakes. Mol. Phyl. Evol. 2006, 40:347-358.
-
(2006)
Mol. Phyl. Evol.
, vol.40
, pp. 347-358
-
-
Noonan, B.P.1
Chippindale, P.T.2
-
50
-
-
39149141072
-
AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics
-
Nylander J.A.A., Wilgenbusch J.C., Warren D.L., Swofford D.L. AWTY (are we there yet?): a system for graphical exploration of MCMC convergence in Bayesian phylogenetics. Bioinformatics 2008, 24:581-583.
-
(2008)
Bioinformatics
, vol.24
, pp. 581-583
-
-
Nylander, J.A.A.1
Wilgenbusch, J.C.2
Warren, D.L.3
Swofford, D.L.4
-
51
-
-
33646735054
-
Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo
-
Pagel M., Meade A. Bayesian analysis of correlated evolution of discrete characters by reversible-jump Markov chain Monte Carlo. Am. Nat. 2006, 167:808-825.
-
(2006)
Am. Nat.
, vol.167
, pp. 808-825
-
-
Pagel, M.1
Meade, A.2
-
52
-
-
9744245452
-
Bayesian estimation of ancestral character states on phylogenies
-
Pagel M., Meade A., Barker D. Bayesian estimation of ancestral character states on phylogenies. Syst. Biol. 2004, 53:673-684.
-
(2004)
Syst. Biol.
, vol.53
, pp. 673-684
-
-
Pagel, M.1
Meade, A.2
Barker, D.3
-
53
-
-
0023822631
-
Relationships between gene trees and species trees
-
Pamilo P., Nei M. Relationships between gene trees and species trees. Mol. Biol. Evol. 1988, 5:568-583.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 568-583
-
-
Pamilo, P.1
Nei, M.2
-
54
-
-
45849154165
-
JModelTest: phylogenetic model averaging
-
Posada D. JModelTest: phylogenetic model averaging. Mol. Biol. Evol. 2008, 25:1253-1256.
-
(2008)
Mol. Biol. Evol.
, vol.25
, pp. 1253-1256
-
-
Posada, D.1
-
55
-
-
0034703844
-
Testing macro-evolutionary models using incomplete molecular phylogenies
-
Pybus O.G., Harvey P.H. Testing macro-evolutionary models using incomplete molecular phylogenies. Proc. R. Soc. Lond. B Biol. Sci. 2000, 267:2267-2272.
-
(2000)
Proc. R. Soc. Lond. B Biol. Sci.
, vol.267
, pp. 2267-2272
-
-
Pybus, O.G.1
Harvey, P.H.2
-
56
-
-
84904319761
-
-
R Development Core Team.R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
-
R Development Core Team. 2011. R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.http://www.R-project.org/.
-
(2011)
-
-
-
57
-
-
84859893546
-
Tail paradox, partial identifiability, and the influential priors in Bayesian branch length inference
-
Rannala B., Zhu T., Yang Z. Tail paradox, partial identifiability, and the influential priors in Bayesian branch length inference. Mol. Biol. Evol. 2012, 29:325-335.
-
(2012)
Mol. Biol. Evol.
, vol.29
, pp. 325-335
-
-
Rannala, B.1
Zhu, T.2
Yang, Z.3
-
58
-
-
84859386818
-
Diversification and the adaptive radiation of the vangas of Madagascar
-
Reddy S., Driskell A., Rabosky D.L., Hackett S.J., Schulenberg T.S. Diversification and the adaptive radiation of the vangas of Madagascar. Proc. R. Soc. B 2012, 279:2062-2071.
-
(2012)
Proc. R. Soc. B
, vol.279
, pp. 2062-2071
-
-
Reddy, S.1
Driskell, A.2
Rabosky, D.L.3
Hackett, S.J.4
Schulenberg, T.S.5
-
59
-
-
47749135700
-
Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis
-
Ree R.H., Smith S.A. Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Syst. Biol. 2008, 57:4-14.
-
(2008)
Syst. Biol.
, vol.57
, pp. 4-14
-
-
Ree, R.H.1
Smith, S.A.2
-
60
-
-
28644450963
-
A likelihood framework for inferring the evolution of geographic range on phylogenetic trees
-
Ree R.H., Moore B.R., Webb C.O., Donoghue M.J. A likelihood framework for inferring the evolution of geographic range on phylogenetic trees. Evolution 2005, 59:2299-2311.
-
(2005)
Evolution
, vol.59
, pp. 2299-2311
-
-
Ree, R.H.1
Moore, B.R.2
Webb, C.O.3
Donoghue, M.J.4
-
61
-
-
84860109324
-
MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space
-
Ronquist F., Teslenko M., van der Mark P., Ayres D.L., Darling A., Höhna S., Larget B., Liu L., Suchard M.A., Huelsenbeck J.P. MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Syst. Biol. 2012, 61:539-542.
-
(2012)
Syst. Biol.
, vol.61
, pp. 539-542
-
-
Ronquist, F.1
Teslenko, M.2
van der Mark, P.3
Ayres, D.L.4
Darling, A.5
Höhna, S.6
Larget, B.7
Liu, L.8
Suchard, M.A.9
Huelsenbeck, J.P.10
-
62
-
-
0032176343
-
C-mos, a nuclear marker useful for squamate phylogenetic analysis
-
Saint K.M., Austin C.C., Donnellan S.C., Hutchinson M.N. C-mos, a nuclear marker useful for squamate phylogenetic analysis. Mol. Phyl. Evol. 1998, 10:259-263.
-
(1998)
Mol. Phyl. Evol.
, vol.10
, pp. 259-263
-
-
Saint, K.M.1
Austin, C.C.2
Donnellan, S.C.3
Hutchinson, M.N.4
-
63
-
-
84886023064
-
Ecological opportunity and incumbency in the diversification of repeated continental colonizations by Muroid rodents
-
Schenk J.J., Rowe K.C., Steppen S.J. Ecological opportunity and incumbency in the diversification of repeated continental colonizations by Muroid rodents. Syst. Biol. 2013, 62:837-864.
-
(2013)
Syst. Biol.
, vol.62
, pp. 837-864
-
-
Schenk, J.J.1
Rowe, K.C.2
Steppen, S.J.3
-
64
-
-
84891531569
-
Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales
-
Smith B.T., Harvey M.G., Faircloth B.C., Glenn T.C., Brumfield R.T. Target capture and massively parallel sequencing of ultraconserved elements for comparative studies at shallow evolutionary time scales. Syst. Biol. 2014, 63:83-95.
-
(2014)
Syst. Biol.
, vol.63
, pp. 83-95
-
-
Smith, B.T.1
Harvey, M.G.2
Faircloth, B.C.3
Glenn, T.C.4
Brumfield, R.T.5
-
65
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006, 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
66
-
-
78651062025
-
Between a rock and a hard polytomy: rapid radiation in the rupicolous girdled lizards (Squamata: Cordylidae)
-
Stanley E.L., Bauer A.M., Jackman T.R., Branch W.R., Mouton P.L.F. Between a rock and a hard polytomy: rapid radiation in the rupicolous girdled lizards (Squamata: Cordylidae). Mol. Phylogenet. Evol. 2011, 58:53-70.
-
(2011)
Mol. Phylogenet. Evol.
, vol.58
, pp. 53-70
-
-
Stanley, E.L.1
Bauer, A.M.2
Jackman, T.R.3
Branch, W.R.4
Mouton, P.L.F.5
-
67
-
-
77954202497
-
DendroPy: a Python library for phylogenetic computing
-
Sukumaran J., Holder M.T. DendroPy: a Python library for phylogenetic computing. Bioinformatics 2010, 26:1569-1571.
-
(2010)
Bioinformatics
, vol.26
, pp. 1569-1571
-
-
Sukumaran, J.1
Holder, M.T.2
-
68
-
-
84904302001
-
-
PAUP *. Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
-
Swofford, D.L., 2003. PAUP *. Phylogenetic Analysis Using Parsimony (* and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
-
(2003)
-
-
Swofford, D.L.1
-
69
-
-
0027968068
-
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J., Higgins D., Gibson T. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22:4673-4680.
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.1
Higgins, D.2
Gibson, T.3
-
70
-
-
41049084425
-
Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: An example from squamate reptiles
-
Townsend T.M., Alegre R.E., Kelley S.T., Wiens J.J., Reeder T.W. Rapid development of multiple nuclear loci for phylogenetic analysis using genomic resources: An example from squamate reptiles. Mol. Phyl. Evol. 2008, 47:129-142.
-
(2008)
Mol. Phyl. Evol.
, vol.47
, pp. 129-142
-
-
Townsend, T.M.1
Alegre, R.E.2
Kelley, S.T.3
Wiens, J.J.4
Reeder, T.W.5
-
71
-
-
78650158560
-
Studies on African Agama VIII. A new subspecies of Agama caudospinosa Meek, 1910 (Sauria: Agamidae)
-
Wagner P. Studies on African Agama VIII. A new subspecies of Agama caudospinosa Meek, 1910 (Sauria: Agamidae). Zootaxa 2010, 2715:36-44.
-
(2010)
Zootaxa
, vol.2715
, pp. 36-44
-
-
Wagner, P.1
-
72
-
-
84904323917
-
-
Diversity and Distribution of African Reptiles. Unpublished Ph.D. Thesis, University of Bonn.
-
Wagner, P., 2010b. Diversity and Distribution of African Reptiles. Unpublished Ph.D. Thesis, University of Bonn.
-
(2010)
-
-
Wagner, P.1
-
73
-
-
84904333045
-
A new dwarf Agama (Sauria: Agamidae) from Ethiopia
-
Wagner P., Bauer A. A new dwarf Agama (Sauria: Agamidae) from Ethiopia. Breviora 2011, 1-19.
-
(2011)
Breviora
, pp. 1-19
-
-
Wagner, P.1
Bauer, A.2
-
74
-
-
44949215730
-
Studies on African Agama III. Resurrection of Agama agama turuensis Loveridge, 1932 (Squamata, Agamidae) from synonymy and elevation to species rank
-
Wagner P., Krause P., Böhme W. Studies on African Agama III. Resurrection of Agama agama turuensis Loveridge, 1932 (Squamata, Agamidae) from synonymy and elevation to species rank. Salamandra 2008, 44:35-42.
-
(2008)
Salamandra
, vol.44
, pp. 35-42
-
-
Wagner, P.1
Krause, P.2
Böhme, W.3
-
75
-
-
47949088238
-
The biogeographical assignment of a west Kenyan rain forest remnant: further evidence from analysis of its reptile fauna
-
Wagner P., Köhler J., Schmitz A., Böhme W. The biogeographical assignment of a west Kenyan rain forest remnant: further evidence from analysis of its reptile fauna. J. Biogeogr. 2008, 35:1349-1361.
-
(2008)
J. Biogeogr.
, vol.35
, pp. 1349-1361
-
-
Wagner, P.1
Köhler, J.2
Schmitz, A.3
Böhme, W.4
-
76
-
-
84863108132
-
Studies on African Agama V. On the origin of Lacerta agama Linnaeus, 1768 (Squamata: Agamidae)
-
Wagner P., Wilms T.M., Bauer A.M., Böhme W. Studies on African Agama V. On the origin of Lacerta agama Linnaeus, 1768 (Squamata: Agamidae). Bonn. zool. Beitr. 2009, 56:215-223.
-
(2009)
Bonn. zool. Beitr.
, vol.56
, pp. 215-223
-
-
Wagner, P.1
Wilms, T.M.2
Bauer, A.M.3
Böhme, W.4
-
77
-
-
84904341798
-
Studies on African Agama IX. New insights into Agama finchi Böhme et al., 2005 (Sauria: Agamidae), with the description of a new subspecies
-
Wagner P., Freund W., Modry D., Schmitz A., Böhme W. Studies on African Agama IX. New insights into Agama finchi Böhme et al., 2005 (Sauria: Agamidae), with the description of a new subspecies. Bonn zool. Bull. 2011, 58:25-34.
-
(2011)
Bonn zool. Bull.
, vol.58
, pp. 25-34
-
-
Wagner, P.1
Freund, W.2
Modry, D.3
Schmitz, A.4
Böhme, W.5
-
78
-
-
33646690277
-
Why does a trait evolve multiple times? Repeated evolution of snakelike body form in squamate reptiles
-
Wiens J.J., Brandley M.C., Reeder T.W. Why does a trait evolve multiple times? Repeated evolution of snakelike body form in squamate reptiles. Evolution 2006, 60:123-141.
-
(2006)
Evolution
, vol.60
, pp. 123-141
-
-
Wiens, J.J.1
Brandley, M.C.2
Reeder, T.W.3
-
79
-
-
84862803650
-
Robustness of compound Dirichlet priors for Bayesian inference of branch lengths
-
Zhang C., Rannala B., Yang Z. Robustness of compound Dirichlet priors for Bayesian inference of branch lengths. Syst. Biol. 2012, 61:779-784.
-
(2012)
Syst. Biol.
, vol.61
, pp. 779-784
-
-
Zhang, C.1
Rannala, B.2
Yang, Z.3
|