-
1
-
-
77649243408
-
When trees grow too long: Investigating the causes of highly inaccurate Bayesian branch-length estimates
-
Brown JM, Hedtke SM, Lemmon AR, Lemmon EM. 2010. When trees grow too long: Investigating the causes of highly inaccurate Bayesian branch-length estimates. Syst Biol. 59:145-161.
-
(2010)
Syst Biol.
, vol.59
, pp. 145-161
-
-
Brown, J.M.1
Hedtke, S.M.2
Lemmon, A.R.3
Lemmon, E.M.4
-
3
-
-
53849090594
-
Bayesian analysis of elapsed times in continuous-Time Markov chains
-
Ferreira M, Suchard M. 2008. Bayesian analysis of elapsed times in continuous-Time Markov chains. Can J Statist. 36:355-368.
-
(2008)
Can J Statist.
, vol.36
, pp. 355-368
-
-
Ferreira, M.1
Suchard, M.2
-
4
-
-
80255128557
-
Forthcoming. Calibrated tree priors for relaxed phylogenetics and divergence time estimation
-
Heled J, Drummond AJ. 2011. Forthcoming. Calibrated tree priors for relaxed phylogenetics and divergence time estimation. Syst Biol.
-
(2011)
Syst Biol
-
-
Heled, J.1
Drummond, A.J.2
-
5
-
-
0028894410
-
Recent African origins of modern humans revealed by complete sequences of hominoid mitochondrial DNAs
-
Horai S, Hayasaka K, Kondo R, Tsugane K, Takahata N. 1995. Recent African origins of modern humans revealed by complete sequences of hominoid mitochondrial DNAs. Proc Natl Acad Sci U S A. 92:532-536.
-
(1995)
Proc Natl Acad Sci U S A.
, vol.92
, pp. 532-536
-
-
Horai, S.1
Hayasaka, K.2
Kondo, R.3
Tsugane, K.4
Takahata, N.5
-
6
-
-
0000732090
-
Evolution of protein molecules
-
In: Munro HN, editor NewYork: Academic Press.
-
Jukes TH, Cantor CR. 1969. Evolution of protein molecules. In: Munro HN, editor.Mammalian proteinmetabolism, volume III. NewYork: Academic Press. p. 21-132.
-
(1969)
Mammalian Proteinmetabolism, Volume III
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
7
-
-
19044373497
-
Polytomies and bayesian phylogenetic inference
-
DOI 10.1080/10635150590924208
-
Lewis P, Holder M, Holsinger K. 2005. Polytomies and Bayesian phylogenetic inference. Syst Biol. 54:241-253. (Pubitemid 40707806)
-
(2005)
Systematic Biology
, vol.54
, Issue.2
, pp. 241-253
-
-
Lewis, P.O.1
Holder, M.T.2
Holsinger, K.E.3
-
8
-
-
72049096137
-
Cryptic failure of partitioned Bayesian phylogenetic analyses: Lost in the land of long trees
-
Marshall DC. 2010. Cryptic failure of partitioned Bayesian phylogenetic analyses: Lost in the land of long trees. Syst Biol. 59:108-117.
-
(2010)
Syst Biol.
, vol.59
, pp. 108-117
-
-
Marshall, D.C.1
-
9
-
-
0030551974
-
Rates of convergence of theHastings and Metropolis algorithms
-
Mengersen KL, Tweedie RL. 1996. Rates of convergence of theHastings and Metropolis algorithms. Ann Statist. 24:101-121.
-
(1996)
Ann Statist.
, vol.24
, pp. 101-121
-
-
Mengersen, K.L.1
Tweedie, R.L.2
-
10
-
-
25844516325
-
PhylogeneticMCMCalgorithms aremisleading on mixtures of trees
-
Mossel E, Vigoda E. 2005. PhylogeneticMCMCalgorithms aremisleading on mixtures of trees. Science 309:2207-2209.
-
(2005)
Science
, vol.309
, pp. 2207-2209
-
-
Mossel, E.1
Vigoda, E.2
-
11
-
-
33746388444
-
Geometric convergence and central limit theorems for multidimensional Hastings and Metropolis algorithms
-
Roberts GO, Tweedie RL. 1996. Geometric convergence and central limit theorems for multidimensional Hastings and Metropolis algorithms. Biometrika 83:95-110.
-
(1996)
Biometrika
, vol.83
, pp. 95-110
-
-
Roberts, G.O.1
Tweedie, R.L.2
-
12
-
-
0032766033
-
Multiple local maxima for likelihoods of phylogenetic trees: A simulation study
-
Rogers J, Swofford D. 1999. Multiple local maxima for likelihoods of phylogenetic trees: A simulation study. Mol Biol Evol. 16:1079-1085. (Pubitemid 29368137)
-
(1999)
Molecular Biology and Evolution
, vol.16
, Issue.8
, pp. 1079-1085
-
-
Rogers, J.S.1
Swofford, D.L.2
-
13
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
DOI 10.1093/bioinformatics/btg180
-
Ronquist F, Huelsenbeck J. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574. (Pubitemid 37038874)
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
15
-
-
43049143466
-
Ancient phylogeographic divergence in southeastern Australia among populations of the widespread common froglet, Crinia signifera
-
Symula R, Keogh JS, Cannatella DC. 2008. Ancient phylogeographic divergence in southeastern Australia among populations of the widespread common froglet, Crinia signifera. Mol Phy Evol. 47:569-580.
-
(2008)
Mol Phy Evol.
, vol.47
, pp. 569-580
-
-
Symula, R.1
Keogh, J.S.2
Cannatella, D.C.3
-
16
-
-
0031741182
-
Estimating the rate of evolution of the rate of molecular evolution
-
Thorne J, Kishino H, Painter IS. 1998. Estimating the rate of evolution of the rate of molecular evolution. Mol Biol Evol. 15:1647-1657. (Pubitemid 28550989)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.12
, pp. 1647-1657
-
-
Thorne, J.L.1
Kishino, H.2
Painter, I.S.3
-
17
-
-
0028064845
-
Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods
-
Yang Z. 1994. Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: Approximate methods. J Mol Evol. 39:306-314. (Pubitemid 24283346)
-
(1994)
Journal of Molecular Evolution
, vol.39
, Issue.3
, pp. 306-314
-
-
Yang, Z.1
-
19
-
-
22844452772
-
Branch-length prior influences Bayesian posterior probability of phylogeny
-
DOI 10.1080/10635150590945313
-
Yang Z, Rannala B. 2005. Branch-length prior influences Bayesian posterior probability of phylogeny. Syst Biol. 54:455-470. (Pubitemid 41040444)
-
(2005)
Systematic Biology
, vol.54
, Issue.3
, pp. 455-470
-
-
Yang, Z.1
Rannala, B.2
-
20
-
-
28944451210
-
Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds
-
DOI 10.1093/molbev/msj024
-
Yang Z, Rannala B. 2006. Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds.Mol Biol Evol. 23:212-226. (Pubitemid 41785968)
-
(2006)
Molecular Biology and Evolution
, vol.23
, Issue.1
, pp. 212-226
-
-
Yang, Z.1
Rannala, B.2
|