메뉴 건너뛰기




Volumn 15, Issue 1, 2014, Pages

Genome-wide analysis of DNA methylation patterns in horse

(25)  Lee, Ja Rang a   Hong, Chang P b   Moon, Jae Woo b   Jung, Yi Deun a   Kim, Dae Soo c   Kim, Tae Hyung b   Gim, Jeong An a   Bae, Jin Han a   Choi, Yuri a   Eo, Jungwoo a   Kwon, Yun Jeong a   Song, Sanghoon b   Ko, Junsu b   Yang, Young M d   Lee, Hak Kyo e   Park, Kyung Do e   Ahn, Kung b   Do, Kyoung Tag e   Ha, Hong Seok f   Han, Kyudong g   more..


Author keywords

Differential methylated region (DMR); Genome wide DNA methylation; Jeju horse; MeDIP seq; Thoroughbred horse

Indexed keywords

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ANIMAL GENETICS; ANIMAL TISSUE; ARTICLE; BODY REGIONS; BRAIN; BREEDING LINE; CONTROLLED STUDY; CPG ISLAND; DNA METHYLATION; EPIGENETICS; GENE EXPRESSION; GENE MAPPING; GENE SEQUENCE; GENETIC ASSOCIATION; GENOMIC INSTABILITY; HEART; HORSE; IMMUNOPRECIPITATION; INTERSPERSED REPEAT; INTRON; KOREA; LONG TERMINAL REPEAT; LUNG; NONHUMAN; PHENOTYPIC PLASTICITY; PROMOTER REGION; SKELETAL MUSCLE; THOROUGHBRED HORSE; TRANSCRIPTION ELONGATION; TRANSCRIPTION INITIATION SITE; ANIMAL; BIOLOGY; DNA SEQUENCE; GENETICS; GENOME; HEART MUSCLE; METABOLISM;

EID: 84904075094     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-598     Document Type: Article
Times cited : (35)

References (67)
  • 1
    • 0027348495 scopus 로고
    • DNA methylation and genomic imprinting in mammals
    • Sasaki H, Allen ND, Surani MA. DNA methylation and genomic imprinting in mammals. EXS 1993, 64:469-486.
    • (1993) EXS , vol.64 , pp. 469-486
    • Sasaki, H.1    Allen, N.D.2    Surani, M.A.3
  • 2
    • 0028954556 scopus 로고
    • Xce haplotypes show modified methylation in a region of the active X chromosome lying 3' to Xist
    • Courtier B, Heard E, Avner P. Xce haplotypes show modified methylation in a region of the active X chromosome lying 3' to Xist. Proc Natl Acad Sci U S A 1995, 92(8):3531-3535.
    • (1995) Proc Natl Acad Sci U S A , vol.92 , Issue.8 , pp. 3531-3535
    • Courtier, B.1    Heard, E.2    Avner, P.3
  • 4
    • 0036144048 scopus 로고    scopus 로고
    • DNA methylation patterns and epigenetic memory
    • Bird A. DNA methylation patterns and epigenetic memory. Genes Dev 2002, 16(1):6-21.
    • (2002) Genes Dev , vol.16 , Issue.1 , pp. 6-21
    • Bird, A.1
  • 5
    • 22844457491 scopus 로고    scopus 로고
    • DNA methylation and human disease
    • Robertson KD. DNA methylation and human disease. Nat Rev Genet 2005, 6(8):597-610.
    • (2005) Nat Rev Genet , vol.6 , Issue.8 , pp. 597-610
    • Robertson, K.D.1
  • 6
    • 77952188471 scopus 로고    scopus 로고
    • Insights into the role of DNA methylation in disease through the use of mouse models
    • Conerly M, Grady WM. Insights into the role of DNA methylation in disease through the use of mouse models. Dis Model Mech 2010, 3(5-6):290-297.
    • (2010) Dis Model Mech , vol.3 , Issue.5-6 , pp. 290-297
    • Conerly, M.1    Grady, W.M.2
  • 7
    • 77957366305 scopus 로고    scopus 로고
    • DNA methylation and cancer
    • Kulis M, Esteller M. DNA methylation and cancer. Adv Genet 2010, 70:27-56.
    • (2010) Adv Genet , vol.70 , pp. 27-56
    • Kulis, M.1    Esteller, M.2
  • 9
    • 0037372003 scopus 로고    scopus 로고
    • Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals
    • Jaenisch R, Bird A. Epigenetic regulation of gene expression: how the genome integrates intrinsic and environmental signals. Nat Genet 2003, 33(Suppl):245-254.
    • (2003) Nat Genet , vol.33 , Issue.SUPPL. , pp. 245-254
    • Jaenisch, R.1    Bird, A.2
  • 10
    • 0026708177 scopus 로고
    • Targeted mutation of the DNA methyltransferase gene results in embryonic lethality
    • Li E, Bestor TH, Jaenisch R. Targeted mutation of the DNA methyltransferase gene results in embryonic lethality. Cell 1992, 69(6):915-926.
    • (1992) Cell , vol.69 , Issue.6 , pp. 915-926
    • Li, E.1    Bestor, T.H.2    Jaenisch, R.3
  • 11
    • 0033615717 scopus 로고    scopus 로고
    • DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development
    • Okano M, Bell DW, Haber DA, Li E. DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development. Cell 1999, 99(3):247-257.
    • (1999) Cell , vol.99 , Issue.3 , pp. 247-257
    • Okano, M.1    Bell, D.W.2    Haber, D.A.3    Li, E.4
  • 12
    • 23044514626 scopus 로고    scopus 로고
    • Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells
    • Weber M, Davies JJ, Wittig D, Oakeley EJ, Haase M, Lam WL, Schubeler D. Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells. Nat Genet 2005, 37(8):853-862.
    • (2005) Nat Genet , vol.37 , Issue.8 , pp. 853-862
    • Weber, M.1    Davies, J.J.2    Wittig, D.3    Oakeley, E.J.4    Haase, M.5    Lam, W.L.6    Schubeler, D.7
  • 14
    • 33845880624 scopus 로고    scopus 로고
    • Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription
    • Zilberman D, Gehring M, Tran RK, Ballinger T, Henikoff S. Genome-wide analysis of Arabidopsis thaliana DNA methylation uncovers an interdependence between methylation and transcription. Nat Genet 2007, 39(1):61-69.
    • (2007) Nat Genet , vol.39 , Issue.1 , pp. 61-69
    • Zilberman, D.1    Gehring, M.2    Tran, R.K.3    Ballinger, T.4    Henikoff, S.5
  • 15
    • 67149086996 scopus 로고    scopus 로고
    • Extensive demethylation of repetitive elements during seed development underlies gene imprinting
    • Gehring M, Bubb KL, Henikoff S. Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 2009, 324(5933):1447-1451.
    • (2009) Science , vol.324 , Issue.5933 , pp. 1447-1451
    • Gehring, M.1    Bubb, K.L.2    Henikoff, S.3
  • 16
    • 77950409567 scopus 로고    scopus 로고
    • Genome-wide analysis of aberrant methylation in human breast cancer cells using methyl-DNA immunoprecipitation combined with high-throughput sequencing
    • Ruike Y, Imanaka Y, Sato F, Shimizu K, Tsujimoto G. Genome-wide analysis of aberrant methylation in human breast cancer cells using methyl-DNA immunoprecipitation combined with high-throughput sequencing. BMC Genomics 2010, 11:137.
    • (2010) BMC Genomics , vol.11 , pp. 137
    • Ruike, Y.1    Imanaka, Y.2    Sato, F.3    Shimizu, K.4    Tsujimoto, G.5
  • 20
    • 1542380557 scopus 로고    scopus 로고
    • Differences in DNA methylation patterns between humans and chimpanzees
    • Enard W, Fassbender A, Model F, Adorjan P, Paabo S, Olek A. Differences in DNA methylation patterns between humans and chimpanzees. Curr Biol 2004, 14(4):R148-R149.
    • (2004) Curr Biol , vol.14 , Issue.4
    • Enard, W.1    Fassbender, A.2    Model, F.3    Adorjan, P.4    Paabo, S.5    Olek, A.6
  • 22
    • 77952355762 scopus 로고    scopus 로고
    • Genome-wide evolutionary analysis of eukaryotic DNA methylation
    • Zemach A, McDaniel IE, Silva P, Zilberman D. Genome-wide evolutionary analysis of eukaryotic DNA methylation. Science 2010, 328(5980):916-919.
    • (2010) Science , vol.328 , Issue.5980 , pp. 916-919
    • Zemach, A.1    McDaniel, I.E.2    Silva, P.3    Zilberman, D.4
  • 24
    • 34047116826 scopus 로고    scopus 로고
    • Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome
    • Weber M, Hellmann I, Stadler MB, Ramos L, Paabo S, Rebhan M, Schubeler D. Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nat Genet 2007, 39(4):457-466.
    • (2007) Nat Genet , vol.39 , Issue.4 , pp. 457-466
    • Weber, M.1    Hellmann, I.2    Stadler, M.B.3    Ramos, L.4    Paabo, S.5    Rebhan, M.6    Schubeler, D.7
  • 30
    • 84867576277 scopus 로고    scopus 로고
    • MSTN genotypes in Thoroughbred horses influence skeletal muscle gene expression and racetrack performance
    • McGivney BA, Browne JA, Fonseca RG, Katz LM, Machugh DE, Whiston R, Hill EW. MSTN genotypes in Thoroughbred horses influence skeletal muscle gene expression and racetrack performance. Anim Genet 2012, 43(6):810-812.
    • (2012) Anim Genet , vol.43 , Issue.6 , pp. 810-812
    • McGivney, B.A.1    Browne, J.A.2    Fonseca, R.G.3    Katz, L.M.4    Machugh, D.E.5    Whiston, R.6    Hill, E.W.7
  • 32
    • 83055186506 scopus 로고    scopus 로고
    • Harnessing the genetic toolbox for the benefit of the racing Thoroughbred
    • Webbon P. Harnessing the genetic toolbox for the benefit of the racing Thoroughbred. Equine Vet J 2012, 44(1):8-12.
    • (2012) Equine Vet J , vol.44 , Issue.1 , pp. 8-12
    • Webbon, P.1
  • 33
    • 78249285496 scopus 로고    scopus 로고
    • Targets of selection in the Thoroughbred genome contain exercise-relevant gene SNPs associated with elite racecourse performance
    • Hill EW, Gu J, McGivney BA, MacHugh DE. Targets of selection in the Thoroughbred genome contain exercise-relevant gene SNPs associated with elite racecourse performance. Anim Genet 2010, 41(Suppl 2):56-63.
    • (2010) Anim Genet , vol.41 , Issue.SUPPL. 2 , pp. 56-63
    • Hill, E.W.1    Gu, J.2    McGivney, B.A.3    MacHugh, D.E.4
  • 34
    • 77957657161 scopus 로고    scopus 로고
    • A genome-wide SNP-association study confirms a sequence variant (g.66493737C > T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses
    • Hill EW, McGivney BA, Gu J, Whiston R, Machugh DE. A genome-wide SNP-association study confirms a sequence variant (g.66493737C > T) in the equine myostatin (MSTN) gene as the most powerful predictor of optimum racing distance for Thoroughbred racehorses. BMC Genomics 2010, 11:552.
    • (2010) BMC Genomics , vol.11 , pp. 552
    • Hill, E.W.1    McGivney, B.A.2    Gu, J.3    Whiston, R.4    Machugh, D.E.5
  • 36
    • 4344595348 scopus 로고    scopus 로고
    • Application of polymerase chain reaction with short oligonucletide primers of arbitrary sequence for the genetic analysis of Cheju native horse
    • Cho BW, Lee KW, Kang HS, Kim SK, Shin TS, Kim YG. Application of polymerase chain reaction with short oligonucletide primers of arbitrary sequence for the genetic analysis of Cheju native horse. J Agr Tech Dev Inst 2001, 5:109-114.
    • (2001) J Agr Tech Dev Inst , vol.5 , pp. 109-114
    • Cho, B.W.1    Lee, K.W.2    Kang, H.S.3    Kim, S.K.4    Shin, T.S.5    Kim, Y.G.6
  • 37
    • 70349717417 scopus 로고    scopus 로고
    • Genetic Relationship and Characteristics Using microsatellite
    • Cho GJ. Genetic Relationship and Characteristics Using microsatellite. J Life Sci 2007, 17(5):699-705.
    • (2007) J Life Sci , vol.17 , Issue.5 , pp. 699-705
    • Cho, G.J.1
  • 38
    • 0033120662 scopus 로고    scopus 로고
    • Phylogenetic relationships of Cheju horses to other horse breeds as determined by mtDNA D-loop sequence polymorphism
    • Kim KI, Yang YH, Lee SS, Park C, Ma R, Bouzat JL, Lewin HA. Phylogenetic relationships of Cheju horses to other horse breeds as determined by mtDNA D-loop sequence polymorphism. Anim Genet 1999, 30(2):102-108.
    • (1999) Anim Genet , vol.30 , Issue.2 , pp. 102-108
    • Kim, K.I.1    Yang, Y.H.2    Lee, S.S.3    Park, C.4    Ma, R.5    Bouzat, J.L.6    Lewin, H.A.7
  • 39
    • 0042196362 scopus 로고    scopus 로고
    • Genetic polymorphism of the serum proteins of horses in Jeju
    • Shin JA, Yang YH, Kim HS, Yun YM, Lee KK. Genetic polymorphism of the serum proteins of horses in Jeju. J Vet Sci 2002, 3(4):255-263.
    • (2002) J Vet Sci , vol.3 , Issue.4 , pp. 255-263
    • Shin, J.A.1    Yang, Y.H.2    Kim, H.S.3    Yun, Y.M.4    Lee, K.K.5
  • 40
    • 84863728760 scopus 로고    scopus 로고
    • A genome-wide association study for quantitative trait loci of show-jumping in Hanoverian warmblood horses
    • Schroder W, Klostermann A, Stock KF, Distl O. A genome-wide association study for quantitative trait loci of show-jumping in Hanoverian warmblood horses. Anim Genet 2012, 43(4):392-400.
    • (2012) Anim Genet , vol.43 , Issue.4 , pp. 392-400
    • Schroder, W.1    Klostermann, A.2    Stock, K.F.3    Distl, O.4
  • 43
    • 79251578642 scopus 로고    scopus 로고
    • Exercise impacts brain-derived neurotrophic factor plasticity by engaging mechanisms of epigenetic regulation
    • Gomez-Pinilla F, Zhuang Y, Feng J, Ying Z, Fan G. Exercise impacts brain-derived neurotrophic factor plasticity by engaging mechanisms of epigenetic regulation. Eur J Neurosci 2011, 33(3):383-390.
    • (2011) Eur J Neurosci , vol.33 , Issue.3 , pp. 383-390
    • Gomez-Pinilla, F.1    Zhuang, Y.2    Feng, J.3    Ying, Z.4    Fan, G.5
  • 44
    • 33744477122 scopus 로고    scopus 로고
    • What makes a champion? Explaining variation in human athletic performance
    • Brutsaert TD, Parra EJ. What makes a champion? Explaining variation in human athletic performance. Respir Physiol Neurobiol 2006, 151(2-3):109-123.
    • (2006) Respir Physiol Neurobiol , vol.151 , Issue.2-3 , pp. 109-123
    • Brutsaert, T.D.1    Parra, E.J.2
  • 46
    • 84874144418 scopus 로고    scopus 로고
    • Comparison of the genome-wide DNA methylation profiles between fast-growing and slow-growing broilers
    • Hu Y, Xu H, Li Z, Zheng X, Jia X, Nie Q, Zhang X. Comparison of the genome-wide DNA methylation profiles between fast-growing and slow-growing broilers. PLoS One 2013, 8(2):e56411.
    • (2013) PLoS One , vol.8 , Issue.2
    • Hu, Y.1    Xu, H.2    Li, Z.3    Zheng, X.4    Jia, X.5    Nie, Q.6    Zhang, X.7
  • 47
    • 84863986133 scopus 로고    scopus 로고
    • Functions of DNA methylation: islands, start sites, gene bodies and beyond
    • Jones PA. Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat Rev Genet 2012, 13(7):484-492.
    • (2012) Nat Rev Genet , vol.13 , Issue.7 , pp. 484-492
    • Jones, P.A.1
  • 48
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • da Huang W, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 2009, 4(1):44-57.
    • (2009) Nat Protoc , vol.4 , Issue.1 , pp. 44-57
    • da Huang, W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 49
    • 0036712032 scopus 로고    scopus 로고
    • Exercise and gene expression: physiological regulation of the human genome through physical activity
    • Booth FW, Chakravarthy MV, Spangenburg EE. Exercise and gene expression: physiological regulation of the human genome through physical activity. J Physiol 2002, 543(Pt 2):399-411.
    • (2002) J Physiol , vol.543 , Issue.PART 2 , pp. 399-411
    • Booth, F.W.1    Chakravarthy, M.V.2    Spangenburg, E.E.3
  • 51
    • 32344450824 scopus 로고    scopus 로고
    • Genomic DNA methylation: the mark and its mediators
    • Klose RJ, Bird AP. Genomic DNA methylation: the mark and its mediators. Trends Biochem Sci 2006, 31(2):89-97.
    • (2006) Trends Biochem Sci , vol.31 , Issue.2 , pp. 89-97
    • Klose, R.J.1    Bird, A.P.2
  • 52
    • 7544231794 scopus 로고    scopus 로고
    • Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells
    • Lorincz MC, Dickerson DR, Schmitt M, Groudine M. Intragenic DNA methylation alters chromatin structure and elongation efficiency in mammalian cells. Nat Struct Mol Biol 2004, 11(11):1068-1075.
    • (2004) Nat Struct Mol Biol , vol.11 , Issue.11 , pp. 1068-1075
    • Lorincz, M.C.1    Dickerson, D.R.2    Schmitt, M.3    Groudine, M.4
  • 53
    • 78449276560 scopus 로고    scopus 로고
    • Interspersed repeats in the horse (Equus caballus); spatial correlations highlight conserved chromosomal domains
    • Adelson DL, Raison JM, Garber M, Edgar RC. Interspersed repeats in the horse (Equus caballus); spatial correlations highlight conserved chromosomal domains. Anim Genet 2010, 41(Suppl 2):91-99.
    • (2010) Anim Genet , vol.41 , Issue.SUPPL. 2 , pp. 91-99
    • Adelson, D.L.1    Raison, J.M.2    Garber, M.3    Edgar, R.C.4
  • 54
    • 77957970301 scopus 로고    scopus 로고
    • Epigenetic modifications and human disease
    • Portela A, Esteller M. Epigenetic modifications and human disease. Nat Biotechnol 2010, 28(10):1057-1068.
    • (2010) Nat Biotechnol , vol.28 , Issue.10 , pp. 1057-1068
    • Portela, A.1    Esteller, M.2
  • 56
    • 0031662164 scopus 로고    scopus 로고
    • Transcription of IAP endogenous retroviruses is constrained by cytosine methylation
    • Walsh CP, Chaillet JR, Bestor TH. Transcription of IAP endogenous retroviruses is constrained by cytosine methylation. Nat Genet 1998, 20(2):116-117.
    • (1998) Nat Genet , vol.20 , Issue.2 , pp. 116-117
    • Walsh, C.P.1    Chaillet, J.R.2    Bestor, T.H.3
  • 57
  • 58
    • 0034326284 scopus 로고    scopus 로고
    • Large-scale methylation analysis of human genomic DNA reveals tissue-specific differences between the methylation profiles of genes and pseudogenes
    • Grunau C, Hindermann W, Rosenthal A. Large-scale methylation analysis of human genomic DNA reveals tissue-specific differences between the methylation profiles of genes and pseudogenes. Hum Mol Genet 2000, 9(18):2651-2663.
    • (2000) Hum Mol Genet , vol.9 , Issue.18 , pp. 2651-2663
    • Grunau, C.1    Hindermann, W.2    Rosenthal, A.3
  • 62
    • 0035875918 scopus 로고    scopus 로고
    • Bimodal activation of SMC ATPase by intra- and inter-molecular interactions
    • Hirano M, Anderson DE, Erickson HP, Hirano T. Bimodal activation of SMC ATPase by intra- and inter-molecular interactions. EMBO J 2001, 20(12):3238-3250.
    • (2001) EMBO J , vol.20 , Issue.12 , pp. 3238-3250
    • Hirano, M.1    Anderson, D.E.2    Erickson, H.P.3    Hirano, T.4
  • 63
    • 0033004145 scopus 로고    scopus 로고
    • Cytoplasmic dynein and dynactin in cell division and intracellular transport
    • Karki S, Holzbaur EL. Cytoplasmic dynein and dynactin in cell division and intracellular transport. Curr Opin Cell Biol 1999, 11(1):45-53.
    • (1999) Curr Opin Cell Biol , vol.11 , Issue.1 , pp. 45-53
    • Karki, S.1    Holzbaur, E.L.2
  • 64
    • 75749107907 scopus 로고    scopus 로고
    • Cell mechanics and the cytoskeleton
    • Fletcher DA, Mullins RD. Cell mechanics and the cytoskeleton. Nature 2010, 463(7280):485-492.
    • (2010) Nature , vol.463 , Issue.7280 , pp. 485-492
    • Fletcher, D.A.1    Mullins, R.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.