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Volumn 42, Issue 12, 2014, Pages 7539-7552

Cooperative gene regulation by microRNA pairs and their identification using a computational workflow

Author keywords

[No Author keywords available]

Indexed keywords

MICRORNA;

EID: 84904016399     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gku465     Document Type: Article
Times cited : (69)

References (74)
  • 2
    • 1642374097 scopus 로고    scopus 로고
    • Specificity of microRNA target selection in translational repression
    • Doench, J.G., Sharp, P.A. (2004) Specificity of microRNA target selection in translational repression. Genes Dev., 18, 504-511.
    • (2004) Genes Dev. , vol.18 , pp. 504-511
    • Doench, J.G.1    Sharp, P.A.2
  • 3
    • 84867499417 scopus 로고    scopus 로고
    • Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs
    • Lai, X., Schmitz, U., Gupta, S.K., Bhattacharya, A., Kunz, M., Wolkenhauer, O., Vera, J. (2012) Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs. Nucleic Acids Res., 40, 8818-8834.
    • (2012) Nucleic Acids Res. , vol.40 , pp. 8818-8834
    • Lai, X.1    Schmitz, U.2    Gupta, S.K.3    Bhattacharya, A.4    Kunz, M.5    Wolkenhauer, O.6    Vera, J.7
  • 4
    • 34547555796 scopus 로고    scopus 로고
    • Global and local architecture of the mammalian microRNA-transcription factor regulatory network
    • Shalgi, R., Lieber, D., Oren, M., Pilpel, Y. (2007) Global and local architecture of the mammalian microRNA-transcription factor regulatory network. PLoS Comput. Biol., 3, e131.
    • (2007) PLoS Comput. Biol. , vol.3
    • Shalgi, R.1    Lieber, D.2    Oren, M.3    Pilpel, Y.4
  • 5
    • 84934439280 scopus 로고    scopus 로고
    • Working together: Combinatorial regulation by microRNAs
    • Schmitz, U., Wolkenhauer, O., Vera, J. (eds.) Springer, Netherlands, Dordrecht
    • Friedman, Y., Balaga, O., Linial, M. (2013) Working together: combinatorial regulation by microRNAs. In: Schmitz, U., Wolkenhauer, O., Vera, J. (eds.), MicroRNACancer Regulation. Vol. 774. Springer, Netherlands, Dordrecht, pp. 317-337.
    • (2013) MicroRNACancer Regulation , vol.774 , pp. 317-337
    • Friedman, Y.1    Balaga, O.2    Linial, M.3
  • 6
    • 84934438006 scopus 로고    scopus 로고
    • MicroRNA-regulated networks: The perfect storm for classical molecular biology, the ideal scenario for systems biology
    • Vera, J., Lai, X., Schmitz, U., Wolkenhauer, O. (2013) MicroRNA-regulated networks: the perfect storm for classical molecular biology, the ideal scenario for systems biology. Adv Exp Med Biol.774:55-76.
    • (2013) Adv Exp Med Biol. , vol.774 , pp. 55-76
    • Vera, J.1    Lai, X.2    Schmitz, U.3    Wolkenhauer, O.4
  • 8
    • 53349177819 scopus 로고    scopus 로고
    • Characterization of microRNAs in serum: A novel class of biomarkers for diagnosis of cancer and other diseases
    • Chen, X., Ba, Y., Ma, L., Cai, X., Yin, Y., Wang, K., Guo, J., Zhang, Y., Chen, J., Guo, X. et al. (2008) Characterization of microRNAs in serum: a novel class of biomarkers for diagnosis of cancer and other diseases. Cell Res., 18, 997-1006.
    • (2008) Cell Res. , vol.18 , pp. 997-1006
    • Chen, X.1    Ba, Y.2    Ma, L.3    Cai, X.4    Yin, Y.5    Wang, K.6    Guo, J.7    Zhang, Y.8    Chen, J.9    Guo, X.10
  • 10
    • 77954386183 scopus 로고    scopus 로고
    • The road toward microRNA therapeutics
    • Seto, A.G. (2010) The road toward microRNA therapeutics. Intl. J. Biochem. Cell Biol., 42, 1298-1305.
    • (2010) Intl. J. Biochem. Cell Biol. , vol.42 , pp. 1298-1305
    • Seto, A.G.1
  • 11
    • 81855224576 scopus 로고    scopus 로고
    • MicroRNAs en route to the clinic: Progress in validating and targeting microRNAs for cancer therapy
    • Kasinski, A.L., Slack, F.J. (2011) MicroRNAs en route to the clinic: progress in validating and targeting microRNAs for cancer therapy. Nat. Rev. Cancer, 11, 849-864.
    • (2011) Nat. Rev. Cancer , vol.11 , pp. 849-864
    • Kasinski, A.L.1    Slack, F.J.2
  • 12
    • 0942301280 scopus 로고    scopus 로고
    • The C elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR
    • Vella, M.C., Choi, E-Y, Lin, S-Y, Reinert, K., Slack, F.J. (2004) The C. elegans microRNA let-7 binds to imperfect let-7 complementary sites from the lin-41 3'UTR. Genes Dev., 18, 132-137.
    • (2004) Genes Dev. , vol.18 , pp. 132-137
    • Vella, M.C.1    Choi, E.-Y.2    Lin, S.-Y.3    Reinert, K.4    Slack, F.J.5
  • 13
    • 34249856066 scopus 로고    scopus 로고
    • Distance constraints between microRNA target sites dictate efficacy and cooperativity
    • Saetrom, P., Heale, B.S.E., Sne, O., Aagaard, L., Alluin, J., Rossi, J.J. (2007) Distance constraints between microRNA target sites dictate efficacy and cooperativity. Nucleic Acids Res., 35, 2333-2342.
    • (2007) Nucleic Acids Res. , vol.35 , pp. 2333-2342
    • Saetrom, P.1    Heale, B.S.E.2    Sne, O.3    Aagaard, L.4    Alluin, J.5    Rossi, J.J.6
  • 14
    • 37349050790 scopus 로고    scopus 로고
    • The roles of binding site arrangement and combinatorial targeting in microRNA repression of gene expression
    • Hon, L.S., Zhang, Z. (2007) The roles of binding site arrangement and combinatorial targeting in microRNA repression of gene expression. Genome Biol., 8, R166.
    • (2007) Genome Biol. , vol.8
    • Hon, L.S.1    Zhang, Z.2
  • 15
    • 84890019107 scopus 로고    scopus 로고
    • A systems' biology approach to study microRNA-mediated gene regulatory networks
    • Lai, X., Bhattacharya, A., Schmitz, U., Kunz, M., Vera, J., Wolkenhauer, O.(2013) A systems' biology approach to study microRNA-mediated gene regulatory networks. Biomed Res Int. 2013:703849.
    • (2013) Biomed Res Int. , vol.2013 , pp. 703849
    • Lai, X.1    Bhattacharya, A.2    Schmitz, U.3    Kunz, M.4    Vera, J.5    Wolkenhauer, O.6
  • 16
    • 77955963884 scopus 로고    scopus 로고
    • Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites
    • Betel, D., Koppal, A., Agius, P., Sander, C., Leslie, C. (2010) Comprehensive modeling of microRNA targets predicts functional non-conserved and non-canonical sites. Genome Biol., 11, R90.
    • (2010) Genome Biol. , vol.11
    • Betel, D.1    Koppal, A.2    Agius, P.3    Sander, C.4    Leslie, C.5
  • 23
    • 67650727366 scopus 로고    scopus 로고
    • VARNA: Interactive drawing and editing of the RNA secondary structure
    • Darty, K., Denise, A., Ponty, Y. (2009) VARNA: interactive drawing and editing of the RNA secondary structure. Bioinformatics, 25, 1974-1975.
    • (2009) Bioinformatics , vol.25 , pp. 1974-1975
    • Darty, K.1    Denise, A.2    Ponty, Y.3
  • 27
    • 0348244547 scopus 로고    scopus 로고
    • All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data
    • Foloppe, N., MacKerell, A.D. Jr. (2000) All-atom empirical force field for nucleic acids: I. Parameter optimization based on small molecule and condensed phase macromolecular target data. J. Comput. Chem., 21, 86-104.
    • (2000) J. Comput. Chem. , vol.21 , pp. 86-104
    • Foloppe, N.1    MacKerell Jr., A.D.2
  • 28
    • 33947424813 scopus 로고    scopus 로고
    • MicroTar: Predicting microRNA targets from RNA duplexes
    • Thadani, R., Tammi, M. (2006) MicroTar: predicting microRNA targets from RNA duplexes. BMC Bioinformat., 7, S20.
    • (2006) BMC Bioinformat. , vol.7
    • Thadani, R.1    Tammi, M.2
  • 29
    • 0000214231 scopus 로고    scopus 로고
    • All-atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution
    • MacKerell, A.D., Banavali, N.K. (2000) All-atom empirical force field for nucleic acids: II. Application to molecular dynamics simulations of DNA and RNA in solution. J. Comput. Chem., 21, 105-120.
    • (2000) J. Comput. Chem. , vol.21 , pp. 105-120
    • Mackerell, A.D.1    Banavali, N.K.2
  • 30
    • 17844373551 scopus 로고    scopus 로고
    • Molecular dynamics simulations and free energy calculations of base flipping in dsRNA
    • Hart, K., Nystrm, B., Ohman, M., Nilsson, L. (2005) Molecular dynamics simulations and free energy calculations of base flipping in dsRNA. RNA, 11, 609-618.
    • (2005) RNA , vol.11 , pp. 609-618
    • Hart, K.1    Nystr-M, B.2    Ohman, M.3    Nilsson, L.4
  • 31
    • 70349270612 scopus 로고    scopus 로고
    • Theoretical studies of RNA catalysis: Hybrid QM/MM methods and their comparison with MD and QM
    • Bans, P., Jurecka, P., Walter, N.G., Sponer, J., Otyepka, M. (2009) Theoretical studies of RNA catalysis: Hybrid QM/MM methods and their comparison with MD and QM. Methods, 49, 202-216.
    • (2009) Methods , vol.49 , pp. 202-216
    • Bans, P.1    Jurecka, P.2    Walter, N.G.3    Sponer, J.4    Otyepka, M.5
  • 32
    • 70350741850 scopus 로고    scopus 로고
    • Molecular dynamics study of the RNA ring nanostructure: A phenomenon of self-stabilization
    • Paliy, M., Melnik, R., Shapiro, B.A. (2009) Molecular dynamics study of the RNA ring nanostructure: a phenomenon of self-stabilization. Phys. Biol., 6, 046003.
    • (2009) Phys. Biol. , vol.6 , pp. 046003
    • Paliy, M.1    Melnik, R.2    Shapiro, B.A.3
  • 33
    • 0141956090 scopus 로고    scopus 로고
    • Generalized born model with a simple smoothing function
    • Im, W., Lee, M.S., Brooks, C.L. 3rd. (2003) Generalized born model with a simple smoothing function. J. Comput. Chem., 24, 1691-1702.
    • (2003) J. Comput. Chem. , vol.24 , pp. 1691-1702
    • Im, W.1    Lee, M.S.2    Brooks III, C.L.3
  • 34
    • 0031167555 scopus 로고    scopus 로고
    • Atomic radii for continuum electrostatics calculations based on molecular dynamics free energy simulations
    • Nina, M., Beglov, D., Roux, B. (1997) Atomic radii for continuum electrostatics calculations based on molecular dynamics free energy simulations. J. Phys. Chem. B, 101, 5239-5248.
    • (1997) J. Phys. Chem. B , vol.101 , pp. 5239-5248
    • Nina, M.1    Beglov, D.2    Roux, B.3
  • 36
    • 33750318273 scopus 로고    scopus 로고
    • A guide through present computational approaches for the identification of mammalian microRNA targets
    • Sethupathy, P., Megraw, M., Hatzigeorgiou, A.G. (2006) A guide through present computational approaches for the identification of mammalian microRNA targets. Nat. Methods, 3, 881-886.
    • (2006) Nat. Methods , vol.3 , pp. 881-886
    • Sethupathy, P.1    Megraw, M.2    Hatzigeorgiou, A.G.3
  • 37
    • 84904019403 scopus 로고    scopus 로고
    • MicroRNA target prediction and validation
    • Schmitz, U., Wolkenhauer, O., Vera, J. (eds.) Springer, Netherlands, Dordrecht
    • Ritchie, W., Rasko, J.E.J., Flamant, S. (2013) MicroRNA Target Prediction and Validation. In: Schmitz, U., Wolkenhauer, O., Vera, J. (eds.), MicroRNACancer Regulation. Vol. 774. Springer, Netherlands, Dordrecht, pp. 189-224.
    • (2013) MicroRNACancer Regulation , vol.774 , pp. 189-224
    • Ritchie, W.1    Rasko, J.E.J.2    Flamant, S.3
  • 38
    • 84885680575 scopus 로고    scopus 로고
    • MicroRNA target identification-experimental approaches
    • Martinez-Sanchez, A., Murphy, C. (2013) MicroRNA target identification-experimental approaches. Biology, 2, 189-205.
    • (2013) Biology , vol.2 , pp. 189-205
    • Martinez-Sanchez, A.1    Murphy, C.2
  • 39
    • 57749206034 scopus 로고    scopus 로고
    • Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex
    • Wang, Y., Juranek, S., Li, H., Sheng, G., Tuschl, T., Patel, D.J. (2008) Structure of an argonaute silencing complex with a seed-containing guide DNA and target RNA duplex. Nature, 456, 921-926.
    • (2008) Nature , vol.456 , pp. 921-926
    • Wang, Y.1    Juranek, S.2    Li, H.3    Sheng, G.4    Tuschl, T.5    Patel, D.J.6
  • 40
    • 84875466989 scopus 로고    scopus 로고
    • Tertiary structure-based analysis of microRNA-target interactions
    • Gan, H.H., Gunsalus, K.C. (2013) Tertiary structure-based analysis of microRNA-target interactions. RNA, 19, 539-551.
    • (2013) RNA , vol.19 , pp. 539-551
    • Gan, H.H.1    Gunsalus, K.C.2
  • 41
    • 4644237189 scopus 로고    scopus 로고
    • Fast and effective prediction of microRNA/target duplexes
    • Rehmsmeier, M., Steffen, P., Hochsmann, M., Giegerich, R. (2004) Fast and effective prediction of microRNA/target duplexes. RNA, 10, 1507-1517.
    • (2004) RNA , vol.10 , pp. 1507-1517
    • Rehmsmeier, M.1    Steffen, P.2    Hochsmann, M.3    Giegerich, R.4
  • 42
    • 33745248430 scopus 로고    scopus 로고
    • MicroRNA target predictions in animals
    • Rajewsky, N. (2006) microRNA target predictions in animals. Nat. Genet., 38 , S8-S13.
    • (2006) Nat. Genet. , vol.38
    • Rajewsky, N.1
  • 43
    • 80255140476 scopus 로고    scopus 로고
    • RNA and protein 3D structure modeling: Similarities and differences
    • Rother, K., Rother, M., Boniecki, M., Puton, T., Bujnicki, J.M. (2011) RNA and protein 3D structure modeling: similarities and differences. J. Mol. Model., 17, 2325-2336.
    • (2011) J. Mol. Model. , vol.17 , pp. 2325-2336
    • Rother, K.1    Rother, M.2    Boniecki, M.3    Puton, T.4    Bujnicki, J.M.5
  • 46
    • 60149095444 scopus 로고    scopus 로고
    • Most mammalian mRNAs are conserved targets of microRNAs
    • Friedman, R.C., Farh, K.K.-H., Burge, C.B., Bartel, D.P. (2009) Most mammalian mRNAs are conserved targets of microRNAs. Genome Res., 19, 92-105.
    • (2009) Genome Res. , vol.19 , pp. 92-105
    • Friedman, R.C.1    Farh, K.K.-H.2    Burge, C.B.3    Bartel, D.P.4
  • 50
    • 0035656688 scopus 로고    scopus 로고
    • Non-coding RNA genes and the modern RNA world
    • Eddy, S.R. (2001) Non-coding RNA genes and the modern RNA world. Nat. Rev. Genet., 2, 919-929.
    • (2001) Nat. Rev. Genet. , vol.2 , pp. 919-929
    • Eddy, S.R.1
  • 51
    • 51349085880 scopus 로고    scopus 로고
    • A story of growing confusion: Genes and their regulation
    • Prohaska, S.J., Stadler, P.F. (2008) A story of growing confusion: genes and their regulation. Biophys. Rev. Lett., 03, 285-302.
    • (2008) Biophys. Rev. Lett. , vol.3 , pp. 285-302
    • Prohaska, S.J.1    Stadler, P.F.2
  • 52
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNAs: Small RNAs with a big role in gene regulation
    • He, L., Hannon, G.J. (2004) MicroRNAs: small RNAs with a big role in gene regulation. Nat. Rev. Genet., 5, 522-531.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 53
    • 34047259186 scopus 로고    scopus 로고
    • Improving the prediction of human microRNA target genes by using ensemble algorithm
    • Yan, X., Chao, T., Tu, K., Zhang, Y., Xie, L., Gong, Y., Yuan, J., Qiang, B., Peng, X. (2007) Improving the prediction of human microRNA target genes by using ensemble algorithm. FEBS Lett., 581, 1587-1593.
    • (2007) FEBS Lett. , vol.581 , pp. 1587-1593
    • Yan, X.1    Chao, T.2    Tu, K.3    Zhang, Y.4    Xie, L.5    Gong, Y.6    Yuan, J.7    Qiang, B.8    Peng, X.9
  • 54
    • 84876935138 scopus 로고    scopus 로고
    • Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding
    • Helwak, A., Kudla, G., Dudnakova, T., Tollervey, D. (2013) Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding. Cell, 153, 654-665.
    • (2013) Cell , vol.153 , pp. 654-665
    • Helwak, A.1    Kudla, G.2    Dudnakova, T.3    Tollervey, D.4
  • 55
    • 79959946169 scopus 로고    scopus 로고
    • Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast
    • Kudla, G., Granneman, S., Hahn, D., Beggs, J.D., Tollervey, D. (2011) Cross-linking, ligation, and sequencing of hybrids reveals RNA-RNA interactions in yeast. Proc. Natl. Acad. Sci., 108, 10010-10015.
    • (2011) Proc. Natl. Acad. Sci. , vol.108 , pp. 10010-10015
    • Kudla, G.1    Granneman, S.2    Hahn, D.3    Beggs, J.D.4    Tollervey, D.5
  • 56
    • 15244354492 scopus 로고    scopus 로고
    • Incorporating structure to predict microRNA targets
    • Robins, H., Li, Y., Padgett, R.W. (2005) Incorporating structure to predict microRNA targets. Proc. Natl. Acad. Sci. U.S.A., 102, 4006-4009.
    • (2005) Proc. Natl. Acad. Sci. U.S.A. , vol.102 , pp. 4006-4009
    • Robins, H.1    Li, Y.2    Padgett, R.W.3
  • 57
    • 50849141708 scopus 로고    scopus 로고
    • MirWIP: MicroRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts
    • Hammell, M., Long, D., Zhang, L., Lee, A., Carmack, C.S., Han, M., Ding, Y., Ambros, V. (2008) mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts. Nat. Methods 5, 813-819.
    • (2008) Nat. Methods , vol.5 , pp. 813-819
    • Hammell, M.1    Long, D.2    Zhang, L.3    Lee, A.4    Carmack, C.S.5    Han, M.6    Ding, Y.7    Ambros, V.8
  • 58
    • 38849145861 scopus 로고    scopus 로고
    • Prediction of both conserved and nonconserved microRNA targets in animals
    • Wang, X., El Naqa, I.M. (2007) Prediction of both conserved and nonconserved microRNA targets in animals. Bioinformatics, 24, 325-332.
    • (2007) Bioinformatics , vol.24 , pp. 325-332
    • Wang, X.1    El Naqa, I.M.2
  • 59
    • 0033709625 scopus 로고    scopus 로고
    • RNA pseudoknot prediction in energy-based models
    • Lyngs?R.B., Pedersen, C.N.S. (2000) RNA pseudoknot prediction in energy-based models. J. Comput. Biol., 7, 409-427.
    • (2000) J. Comput. Biol. , vol.7 , pp. 409-427
    • Lyngs, R.B.1    Pedersen, C.N.S.2
  • 60
    • 40449139010 scopus 로고    scopus 로고
    • The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data
    • Parisien, M., Major, F. (2008) The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data. Nature, 452, 51-55.
    • (2008) Nature , vol.452 , pp. 51-55
    • Parisien, M.1    Major, F.2
  • 62
    • 84875466989 scopus 로고    scopus 로고
    • Tertiary structure-based analysis of microRNA-target interactions
    • Gan, H.H., Gunsalus, K.C. (2013) Tertiary structure-based analysis of microRNA-target interactions. RNA, 19, 539-551.
    • (2013) RNA , vol.19 , pp. 539-551
    • Gan, H.H.1    Gunsalus, K.C.2
  • 64
    • 33748774659 scopus 로고    scopus 로고
    • Implicit solvent simulations of DNA and DNA-protein complexes: Agreement with explicit solvent vs experiment
    • Chocholousov, J., Feig, M. (2006) Implicit solvent simulations of DNA and DNA-protein complexes: agreement with explicit solvent vs experiment. J. Phys. Chem. B, 110, 17240-17251.
    • (2006) J. Phys. Chem. B , vol.110 , pp. 17240-17251
    • Chocholousov, J.1    Feig, M.2
  • 65
    • 33847318371 scopus 로고    scopus 로고
    • Molecular dynamics simulations of RNA: Anin silico single molecule approach
    • McDowell, S.E., Spackov, N., Sponer, J., Walter, N.G. (2007) Molecular dynamics simulations of RNA: Anin silico single molecule approach. Biopolymers, 85, 169-184.
    • (2007) Biopolymers , vol.85 , pp. 169-184
    • McDowell, S.E.1    Spackov, N.2    Sponer, J.3    Walter, N.G.4
  • 66
    • 80052020054 scopus 로고    scopus 로고
    • Molecular dynamics simulation and binding energy calculation for estimation of oligonucleotide duplex thermostability in RNA-based therapeutics
    • Shen, L., Johnson, T.L., Clugston, S., Huang, H., Butenhof, K.J., Stanton, R.V. (2011) Molecular dynamics simulation and binding energy calculation for estimation of oligonucleotide duplex thermostability in RNA-based therapeutics. J. Chem. Informat. Model., 51, 1957-1965.
    • (2011) J. Chem. Informat. Model. , vol.51 , pp. 1957-1965
    • Shen, L.1    Johnson, T.L.2    Clugston, S.3    Huang, H.4    Butenhof, K.J.5    Stanton, R.V.6
  • 67
    • 36849064251 scopus 로고    scopus 로고
    • Target-specific and global effectors in gene regulation by MicroRNA
    • Levine, E., Jacob, E.B., Levine, H. (2007) Target-specific and global effectors in gene regulation by MicroRNA. Biophys. J., 93, L52-L54.
    • (2007) Biophys. J. , vol.93
    • Levine, E.1    Jacob, E.B.2    Levine, H.3
  • 68
    • 47949097974 scopus 로고    scopus 로고
    • Computational analysis of miRNA-mediated repression of translation: Implications for models of translation initiation inhibition
    • Nissan, T., Parker, R. (2008) Computational analysis of miRNA-mediated repression of translation: implications for models of translation initiation inhibition. RNA, 14, 1480-1491.
    • (2008) RNA , vol.14 , pp. 1480-1491
    • Nissan, T.1    Parker, R.2
  • 69
    • 84934444801 scopus 로고    scopus 로고
    • Mathematical modeling of microRNA-mediated mechanisms of translation repression
    • Schmitz, U., Wolkenhauer, O., Vera, J. (eds.) Springer, Netherlands, Dordrecht
    • Zinovyev, A., Morozova, N., Gorban, A.N., Harel-Belan, A. (2013) Mathematical modeling of microRNA-mediated mechanisms of translation repression. In: Schmitz, U., Wolkenhauer, O., Vera, J. (eds.). MicroRNA Cancer Regulation. Vol. 774. Springer , Netherlands, Dordrecht, pp. 189-224.
    • (2013) MicroRNA Cancer Regulation , vol.774 , pp. 189-224
    • Zinovyev, A.1    Morozova, N.2    Gorban, A.N.3    Harel-Belan, A.4
  • 70
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang, D.W., Sherman, B.T., Lempicki, R.A. (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc., 4, 44-57.
    • (2009) Nat. Protoc. , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 71
    • 33646242293 scopus 로고    scopus 로고
    • Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes
    • Rigoutsos, I. (2006) Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes. Proc. Natl. Acad. Sci., 103, 6605-6610.
    • (2006) Proc. Natl. Acad. Sci. , vol.103 , pp. 6605-6610
    • Rigoutsos, I.1
  • 72
    • 34247278567 scopus 로고    scopus 로고
    • Combinatorial RNAi: A winning strategy for the race against evolving targets? Mol
    • Grimm, D., Kay, M.A. (2007) Combinatorial RNAi: a winning strategy for the race against evolving targets? Mol. Therapy, 15, 878-888.
    • (2007) Therapy , vol.15 , pp. 878-888
    • Grimm, D.1    Kay, M.A.2
  • 74
    • 0037246950 scopus 로고    scopus 로고
    • DSMM: A Database of Simulated Molecular Motions
    • Finocchiaro, G. (2003) DSMM: a Database of Simulated Molecular Motions. Nucleic Acids Res., 31, 456-457.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 456-457
    • Finocchiaro, G.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.