-
1
-
-
18044367581
-
ppGpp: A global regulator in Escherichia coli
-
Magnusson LU, Farewell A, Nyström T. 2005. ppGpp: a global regulator in Escherichia coli. Trends Microbiol. 13: 236-242. http://dx. doi. org/10. 1016/j. tim. 2005. 03. 008.
-
(2005)
Trends Microbiol
, vol.13
, pp. 236-242
-
-
Magnusson, L.U.1
Farewell, A.2
Nyström, T.3
-
2
-
-
45449099933
-
Advances in bacterial promoter recognition and its control by factors that do not bind DNA
-
Haugen SP, Ross W, Gourse RL. 2008. Advances in bacterial promoter recognition and its control by factors that do not bind DNA. Nat. Rev. Microbiol. 6: 507-519. http://dx. doi. org/10. 1038/nrmicro1912.
-
(2008)
Nat. Rev. Microbiol
, vol.6
, pp. 507-519
-
-
Haugen, S.P.1
Ross, W.2
Gourse, R.L.3
-
3
-
-
45449090551
-
(p)ppGpp: Still magical?
-
doi: 10. 1146/annurev. micro. 62. 081307. 1629 03
-
Potrykus K, Cashel M. 2008. (p)ppGpp: still magical? Annu. Rev. Microbiol. 62: 35-51. doi: 10. 1146/annurev. micro. 62. 081307. 1629 03.
-
(2008)
Annu Rev. Microbiol
, vol.62
, pp. 35-51
-
-
Potrykus, K.1
Cashel, M.2
-
4
-
-
65549155326
-
Similar and divergent effects of ppGpp and DksA deficiencies on transcription in Escherichia coli
-
Aberg A, Fernández-Vázquez J, Cabrer-Panes JD, Sánchez A, Balsalobre C. 2009. Similar and divergent effects of ppGpp and DksA deficiencies on transcription in Escherichia coli. J. Bacteriol. 191: 3226-3236. http://dx. doi. org/10. 1128/JB. 01410-08.
-
(2009)
J. Bacteriol
, vol.191
, pp. 3226-3236
-
-
Aberg, A.1
Fernández-Vázquez, J.2
Cabrer-Panes, J.D.3
Sánchez, A.4
Balsalobre, C.5
-
5
-
-
84868525121
-
Functional characterization of the stringent response regulatory gene dksA of Vibrio cholerae and its role in modulation of virulence phenotypes
-
Pal RR, Bag S, Dasgupta S, Das B, Bhadra RK. 2012. Functional characterization of the stringent response regulatory gene dksA of Vibrio cholerae and its role in modulation of virulence phenotypes. J. Bacteriol. 194: 5638-5648. http://dx. doi. org/10. 1128/JB. 00518-12.
-
(2012)
J. Bacteriol
, vol.194
, pp. 5638-5648
-
-
Pal, R.R.1
Bag, S.2
Dasgupta, S.3
Das, B.4
Bhadra, R.K.5
-
6
-
-
18444362128
-
DksA represses ribosomal gene transcription in Pseudomonas aeruginosa by interacting with RNA polymerase on ribosomal promoters
-
Perron K, Comte R, van Delden C. 2005. DksA represses ribosomal gene transcription in Pseudomonas aeruginosa by interacting with RNA polymerase on ribosomal promoters. Mol. Microbiol. 56: 1087-1102. http://dx. doi. org/10. 1111/j. 1365-2958. 2005. 04597. x.
-
(2005)
Mol. Microbiol
, vol.56
, pp. 1087-1102
-
-
Perron, K.1
Comte, R.2
van Delden, C.3
-
7
-
-
33749177569
-
Induction of expression of hfq by DksA is essential for Shigella flexneri virulence
-
Sharma AK, Payne SM. 2006. Induction of expression of hfq by DksA is essential for Shigella flexneri virulence. Mol. Microbiol. 62: 469-479. http://dx. doi. org/10. 1111/j. 1365-2958. 2006. 05376. x.
-
(2006)
Mol. Microbiol
, vol.62
, pp. 469-479
-
-
Sharma, A.K.1
Payne, S.M.2
-
8
-
-
46049091165
-
Role of the DksA-like protein in the pathogenesis and diverse metabolic activity of Campylobacter jejuni
-
Yun J, Jeon B, Barton YW, Plummer P, Zhang Q, Ryu S. 2008. Role of the DksA-like protein in the pathogenesis and diverse metabolic activity of Campylobacter jejuni. J. Bacteriol. 190: 4512-4520. http://dx. doi. org/10. 1128/JB. 00105-08.
-
(2008)
J. Bacteriol
, vol.190
, pp. 4512-4520
-
-
Yun, J.1
Jeon, B.2
Barton, Y.W.3
Plummer, P.4
Zhang, Q.5
Ryu, S.6
-
9
-
-
77950211392
-
Distinct roles of ppGpp and DksA in Legionella pneumophila differentiation
-
Dalebroux ZD, Yagi BF, Sahr T, Buchrieser C, Swanson MS. 2010. Distinct roles of ppGpp and DksA in Legionella pneumophila differentiation. Mol. Microbiol. 76: 200-219. http://dx. doi. org/10. 1111/j. 1365-2958. 2010. 07094. x.
-
(2010)
Mol. Microbiol
, vol.76
, pp. 200-219
-
-
Dalebroux, Z.D.1
Yagi, B.F.2
Sahr, T.3
Buchrieser, C.4
Swanson, M.S.5
-
10
-
-
4043069926
-
DksA: A critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP
-
Paul BJ, Barker MM, Ross W, Schneider DA, Webb C, Foster JW, Gourse RL. 2004. DksA: a critical component of the transcription initiation machinery that potentiates the regulation of rRNA promoters by ppGpp and the initiating NTP. Cell 118: 311-322. http://dx. doi. org/10. 1016/j. cell. 2004. 07. 009.
-
(2004)
Cell
, vol.118
, pp. 311-322
-
-
Paul, B.J.1
Barker, M.M.2
Ross, W.3
Schneider, D.A.4
Webb, C.5
Foster, J.W.6
Gourse, R.L.7
-
11
-
-
78751693014
-
Role of a Zn-independent DksA in Zn homeostasis and stringent response
-
Blaby-Haas CE, Furman R, Rodionov DA, Artsimovitch I, de Crécy-Lagard V. 2011. Role of a Zn-independent DksA in Zn homeostasis and stringent response. Mol. Microbiol. 79: 700-715. http://dx. doi. org/10. 1111/j. 1365-2958. 2010. 07475. x.
-
(2011)
Mol. Microbiol
, vol.79
, pp. 700-715
-
-
Blaby-Haas, C.E.1
Furman, R.2
Rodionov, D.A.3
Artsimovitch, I.4
de Crécy-Lagard, V.5
-
12
-
-
33748662456
-
DksA is required for growth phase-dependent regulation, growth rate-dependent control, and stringent control of fis expression in Escherichia coli
-
Mallik P, Paul BJ, Rutherford ST, Gourse RL, Osuna R. 2006. DksA is required for growth phase-dependent regulation, growth rate-dependent control, and stringent control of fis expression in Escherichia coli. J. Bacteriol. 188: 5775-5782. http://dx. doi. org/10. 1128/JB. 00276-06.
-
(2006)
J. Bacteriol
, vol.188
, pp. 5775-5782
-
-
Mallik, P.1
Paul, B.J.2
Rutherford, S.T.3
Gourse, R.L.4
Osuna, R.5
-
13
-
-
72049100690
-
DksA and ppGpp directly regulate transcription of the Escherichia coli flagellar cascade
-
Lemke JJ, Durfee T, Gourse RL. 2009. DksA and ppGpp directly regulate transcription of the Escherichia coli flagellar cascade. Mol. Microbiol. 74: 1368-1379. http://dx. doi. org/10. 1111/j. 1365-2958. 2009. 06939. x.
-
(2009)
Mol. Microbiol
, vol.74
, pp. 1368-1379
-
-
Lemke, J.J.1
Durfee, T.2
Gourse, R.L.3
-
14
-
-
79957486892
-
The dksA promoter is negatively feedback regulated by DksA and ppGpp
-
Chandrangsu P, Lemke JJ, Gourse RL. 2011. The dksA promoter is negatively feedback regulated by DksA and ppGpp. Mol. Microbiol. 80: 1337-1348. http://dx. doi. org/10. 1111/j. 1365-2958. 2011. 07649. x.
-
(2011)
Mol. Microbiol
, vol.80
, pp. 1337-1348
-
-
Chandrangsu, P.1
Lemke, J.J.2
Gourse, R.L.3
-
15
-
-
79955047348
-
Direct regulation of Escherichia coli ribosomal protein promoters by the transcription factors ppGpp and DksA
-
Lemke JJ, Sanchez-Vazquez P, Burgos HL, Hedberg G, Ross W, Gourse RL. 2011. Direct regulation of Escherichia coli ribosomal protein promoters by the transcription factors ppGpp and DksA. Proc. Natl. Acad. Sci. U. S. A. 108: 5712-5717. http://dx. doi. org/10. 1073/pnas. 1019383108.
-
(2011)
Proc. Natl. Acad. Sci. U.S. A
, vol.108
, pp. 5712-5717
-
-
Lemke, J.J.1
Sanchez-Vazquez, P.2
Burgos, H.L.3
Hedberg, G.4
Ross, W.5
Gourse, R.L.6
-
16
-
-
84880999011
-
Transcription of the Escherichia coli fatty acid synthesis operon fabHDG is directly activated by FadR and inhibited by ppGpp
-
My L, Rekoske B, Lemke JJ, Viala JP, Gourse RL, Bouveret E. 2013. Transcription of the Escherichia coli fatty acid synthesis operon fabHDG is directly activated by FadR and inhibited by ppGpp. J. Bacteriol. 195: 3784-3795. http://dx. doi. org/10. 1128/JB. 00384-13.
-
(2013)
J. Bacteriol
, vol.195
, pp. 3784-3795
-
-
My, L.1
Rekoske, B.2
Lemke, J.J.3
Viala, J.P.4
Gourse, R.L.5
Bouveret, E.6
-
17
-
-
20344363655
-
DksA potentiates direct activation of amino acid promoters by ppGpp
-
Paul BJ, Berkmen MB, Gourse RL. 2005. DksA potentiates direct activation of amino acid promoters by ppGpp. Proc. Natl. Acad. Sci. U. S. A. 102: 7823-7828. http://dx. doi. org/10. 1073/pnas. 0501170102.
-
(2005)
Proc. Natl. Acad. Sci. U.S. A
, vol.102
, pp. 7823-7828
-
-
Paul, B.J.1
Berkmen, M.B.2
Gourse, R.L.3
-
18
-
-
4043108470
-
Regulation through the secondary channel-structural framework for ppGpp-DksA synergism during transcription
-
Perederina A, Svetlov V, Vassylyeva MN, Tahirov TH, Yokoyama S, Artsimovitch I, Vassylyev DG. 2004. Regulation through the secondary channel-structural framework for ppGpp-DksA synergism during transcription. Cell 118: 297-309. http://dx. doi. org/10. 1016/j. cell. 2004. 06. 030.
-
(2004)
Cell
, vol.118
, pp. 297-309
-
-
Perederina, A.1
Svetlov, V.2
Vassylyeva, M.N.3
Tahirov, T.H.4
Yokoyama, S.5
Artsimovitch, I.6
Vassylyev, D.G.7
-
19
-
-
58849139777
-
Allosteric control of Escherichia coli rRNA promoter complexes by DksA
-
Rutherford ST, Villers CL, Lee JH, Ross W, Gourse RL. 2009. Allosteric control of Escherichia coli rRNA promoter complexes by DksA. Genes Dev. 23: 236-248. http://dx. doi. org/10. 1101/gad. 1745409.
-
(2009)
Genes Dev
, vol.23
, pp. 236-248
-
-
Rutherford, S.T.1
Villers, C.L.2
Lee, J.H.3
Ross, W.4
Gourse, R.L.5
-
20
-
-
84870522491
-
Direct interactions between the coiled-coil tip of DksA and the trigger loop of RNA polymerase mediate transcriptional regulation
-
Lennon CW, Ross W, Martin-Tumasz S, Toulokhonov I, Vrentas CE, Rutherford ST, Lee JH, Butcher SE, Gourse RL. 2012. Direct interactions between the coiled-coil tip of DksA and the trigger loop of RNA polymerase mediate transcriptional regulation. Genes Dev. 26: 2634-2646. http://dx. doi. org/10. 1101/gad. 204693. 112.
-
(2012)
Genes Dev
, vol.26
, pp. 2634-2646
-
-
Lennon, C.W.1
Ross, W.2
Martin-Tumasz, S.3
Toulokhonov, I.4
Vrentas, C.E.5
Rutherford, S.T.6
Lee, J.H.7
Butcher, S.E.8
Gourse, R.L.9
-
21
-
-
22544464455
-
RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription
-
Trautinger BW, Jaktaji RP, Rusakova E, Lloyd RG. 2005. RNA polymerase modulators and DNA repair activities resolve conflicts between DNA replication and transcription. Mol. Cell 19: 247-258. http://dx. doi. org/10. 1016/j. molcel. 2005. 06. 004.
-
(2005)
Mol. Cell
, vol.19
, pp. 247-258
-
-
Trautinger, B.W.1
Jaktaji, R.P.2
Rusakova, E.3
Lloyd, R.G.4
-
22
-
-
77952527102
-
The transcription factor DksA prevents conflicts between DNA replication and transcription machinery
-
Tehranchi AK, Blankschien MD, Zhang Y, Halliday JA, Srivatsan A, Peng J, Herman C, Wang JD. 2010. The transcription factor DksA prevents conflicts between DNA replication and transcription machinery. Cell 141: 595-605. http://dx. doi. org/10. 1016/j. cell. 2010. 03. 036.
-
(2010)
Cell
, vol.141
, pp. 595-605
-
-
Tehranchi, A.K.1
Blankschien, M.D.2
Zhang, Y.3
Halliday, J.A.4
Srivatsan, A.5
Peng, J.6
Herman, C.7
Wang, J.D.8
-
23
-
-
84896748566
-
DksA guards elongating RNA polymerase against ribosome-stalling-induced arrest
-
Zhang Y, Mooney RA, Grass JA, Sivaramakrishnan P, Herman C, Landick R, Wang JD. 2014. DksA guards elongating RNA polymerase against ribosome-stalling-induced arrest. Mol. Cell 53: 766-778. http://dx. doi. org/10. 1016/j. molcel. 2014. 02. 005.
-
(2014)
Mol. Cell
, vol.53
, pp. 766-778
-
-
Zhang, Y.1
Mooney, R.A.2
Grass, J.A.3
Sivaramakrishnan, P.4
Herman, C.5
Landick, R.6
Wang, J.D.7
-
24
-
-
84871747847
-
An insertion in the catalytic trigger loop gates the secondary channel of RNA polymerase
-
Furman R, Tsodikov OV, Wolf YI, Artsimovitch I. 2013. An insertion in the catalytic trigger loop gates the secondary channel of RNA polymerase. J. Mol. Biol. 425: 82-93. http://dx. doi. org/10. 1016/j. jmb. 2012. 11. 008.
-
(2013)
J. Mol. Biol
, vol.425
, pp. 82-93
-
-
Furman, R.1
Tsodikov, O.V.2
Wolf, Y.I.3
Artsimovitch, I.4
-
25
-
-
84862776860
-
Role of the coiled-coil tip of Escherichia coli DksA in promoter control
-
Lee JH, Lennon CW, Ross W, Gourse RL. 2012. Role of the coiled-coil tip of Escherichia coli DksA in promoter control. J. Mol. Biol. 416: 503-517. http://dx. doi. org/10. 1016/j. jmb. 2011. 12. 028.
-
(2012)
J. Mol. Biol
, vol.416
, pp. 503-517
-
-
Lee, J.H.1
Lennon, C.W.2
Ross, W.3
Gourse, R.L.4
-
26
-
-
84875219599
-
DksA2, a zinc-independent structural analog of the transcription factor DksA
-
Furman R, Biswas T, Danhart EM, Foster MP, Tsodikov OV, Artsimovitch I. 2013. DksA2, a zinc-independent structural analog of the transcription factor DksA. FEBS Lett. 587: 614-619. http://dx. doi. org/10. 1016/j. febslet. 2013. 01. 073.
-
(2013)
FEBS Lett
, vol.587
, pp. 614-619
-
-
Furman, R.1
Biswas, T.2
Danhart, E.M.3
Foster, M.P.4
Tsodikov, O.V.5
Artsimovitch, I.6
-
27
-
-
35848942389
-
Postgenomic adventures with Rhodobacter sphaeroides
-
Mackenzie C, Eraso JM, Choudhary M, Roh JH, Zeng X, Bruscella P, Puskás A, Kaplan S. 2007. Postgenomic adventures with Rhodobacter sphaeroides. Annu. Rev. Microbiol. 61: 283-307. http://dx. doi. org/10. 1146/annurev. micro. 61. 080706. 093402.
-
(2007)
Annu. Rev. Microbiol
, vol.61
, pp. 283-307
-
-
Mackenzie, C.1
Eraso, J.M.2
Choudhary, M.3
Roh, J.H.4
Zeng, X.5
Bruscella, P.6
Puskás, A.7
Kaplan, S.8
-
28
-
-
33751202658
-
Development of the bacterial photosynthetic apparatus
-
Tavano CL, Donohue TJ. 2006. Development of the bacterial photosynthetic apparatus. Curr. Opin. Microbiol. 9: 625-631. http://dx. doi. org/10. 1016/j. mib. 2006. 10. 005.
-
(2006)
Curr. Opin. Microbiol
, vol.9
, pp. 625-631
-
-
Tavano, C.L.1
Donohue, T.J.2
-
29
-
-
0027381039
-
Transcription properties of RNA polymerase holoenzymes isolated from the purple nonsulfur bacterium Rhodobacter sphaeroides
-
Karls RK, Jin DJ, Donohue TJ. 1993. Transcription properties of RNA polymerase holoenzymes isolated from the purple nonsulfur bacterium Rhodobacter sphaeroides. J. Bacteriol. 175: 7629-7638.
-
(1993)
J. Bacteriol
, vol.175
, pp. 7629-7638
-
-
Karls, R.K.1
Jin, D.J.2
Donohue, T.J.3
-
30
-
-
0348011834
-
Purification of Rhodobacter sphaeroides RNA polymerase and its sigma factors
-
Anthony JR, Green HA, Donohue TJ. 2003. Purification of Rhodobacter sphaeroides RNA polymerase and its sigma factors. Methods Enzymol. 370: 54-65. http://dx. doi. org/10. 1016/S0076-6879(03)70005-6.
-
(2003)
Methods Enzymol
, vol.370
, pp. 54-65
-
-
Anthony, J.R.1
Green, H.A.2
Donohue, T.J.3
-
31
-
-
77957325735
-
Reconstruction of the core and extended regulons of global transcription factors
-
Dufour YS, Kiley PJ, Donohue TJ. 2010. Reconstruction of the core and extended regulons of global transcription factors. PLoS Genet. 6: e1001027. http://dx. doi. org/10. 1371/journal. pgen. 1001027.
-
(2010)
PLoS Genet
, vol.6
-
-
Dufour, Y.S.1
Kiley, P.J.2
Donohue, T.J.3
-
32
-
-
84874619004
-
Proteins needed to activate a transcriptional response to the reactive oxygen species singlet oxygen
-
e00541-12
-
Nam T-W, Ziegelhoffer EC, Lemke RA, Donohue TJ. 2013. Proteins needed to activate a transcriptional response to the reactive oxygen species singlet oxygen. mBio 4(1): e00541-12. http://dx. doi. org/10. 1128/mBio. 00541-12.
-
(2013)
mBio
, vol.4
, Issue.1
-
-
Nam, T.-W.1
Ziegelhoffer, E.C.2
Lemke, R.A.3
Donohue, T.J.4
-
33
-
-
84870694724
-
Revised sequence and annotation of the Rhodobacter sphaeroides 2.4. 1 genome
-
Kontur WS, Schackwitz WS, Ivanova N, Martin J, Labutti K, Deshpande S, Tice HN, Pennacchio C, Sodergren E, Weinstock GM, Nogu-era DR, Donohue TJ. 2012. Revised sequence and annotation of the Rhodobacter sphaeroides 2. 4. 1 genome. J. Bacteriol. 194: 7016-7017. http://dx. doi. org/10. 1128/JB. 01214-12.
-
(2012)
J. Bacteriol
, vol.194
, pp. 7016-7017
-
-
Kontur, W.S.1
Schackwitz, W.S.2
Ivanova, N.3
Martin, J.4
Labutti, K.5
Deshpande, S.6
Tice, H.N.7
Pennacchio, C.8
Sodergren, E.9
Weinstock, G.M.10
Nogu-era, D.R.11
Donohue, T.J.12
-
34
-
-
37549018895
-
Transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration in Rhodobacter sphaeroides 2.4. 1
-
Arai H, Roh JH, Kaplan S. 2008. Transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration in Rhodobacter sphaeroides 2. 4. 1. J. Bacteriol. 190: 286-299. http://dx. doi. org/10. 1128/JB. 01375-07.
-
(2008)
J. Bacteriol
, vol.190
, pp. 286-299
-
-
Arai, H.1
Roh, J.H.2
Kaplan, S.3
-
35
-
-
1542313800
-
Oxygen intervention in the regulation of gene expression: The photosynthetic bacterial paradigm
-
Zeilstra-Ryalls JH, Kaplan S. 2004. Oxygen intervention in the regulation of gene expression: the photosynthetic bacterial paradigm. Cell. Mol. Life Sci. 61: 417-436. http://dx. doi. org/10. 1007/s00018-003-3242-1.
-
(2004)
Cell. Mol. Life Sci
, vol.61
, pp. 417-436
-
-
Zeilstra-Ryalls, J.H.1
Kaplan, S.2
-
36
-
-
70449138041
-
Kinetic studies of pigment synthesis by non-sulfur purple bacteria
-
Cohen-Bazire G, Sistrom WR, Stanier RY. 1957. Kinetic studies of pigment synthesis by non-sulfur purple bacteria. J. Cell. Physiol. 49: 25-68. http://dx. doi. org/10. 1002/jcp. 1030490104.
-
(1957)
J. Cell. Physiol
, vol.49
, pp. 25-68
-
-
Cohen-Bazire, G.1
Sistrom, W.R.2
Stanier, R.Y.3
-
37
-
-
72849182812
-
A requirement for sodium in the growth of Rhodopseudomonas spheroides
-
Sistrom WR. 1960. A requirement for sodium in the growth of Rhodopseudomonas spheroides. J. Gen. Microbiol. 22: 778-785. http://dx. doi. org/10. 1099/00221287-22-3-778.
-
(1960)
J. Gen. Microbiol
, vol.22
, pp. 778-785
-
-
Sistrom, W.R.1
-
38
-
-
0018507902
-
Changes in the acyl lipid composition of photosynthetic bacteria grown under photosynthetic and nonphotosynthetic conditions
-
Russell NJ, Harwood JL. 1979. Changes in the acyl lipid composition of photosynthetic bacteria grown under photosynthetic and nonphotosynthetic conditions. Biochem. J. 181: 339-345.
-
(1979)
Biochem. J
, vol.181
, pp. 339-345
-
-
Russell, N.J.1
Harwood, J.L.2
-
39
-
-
33846604629
-
Effects of DksA, GreA, and GreB on transcription initiation: Insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase
-
Rutherford ST, Lemke JJ, Vrentas CE, Gaal T, Ross W, Gourse RL. 2007. Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase. J. Mol. Biol. 366: 1243-1257. http://dx. doi. org/10. 1016/j. jmb. 2006. 12. 013.
-
(2007)
J. Mol. Biol
, vol.366
, pp. 1243-1257
-
-
Rutherford, S.T.1
Lemke, J.J.2
Vrentas, C.E.3
Gaal, T.4
Ross, W.5
Gourse, R.L.6
-
40
-
-
25844499174
-
Response of RNA polymerase to ppGpp: Requirement for the omega subunit and relief of this requirement by DksA
-
Vrentas CE, Gaal T, Ross W, Ebright RH, Gourse RL. 2005. Response of RNA polymerase to ppGpp: requirement for the omega subunit and relief of this requirement by DksA. Genes Dev. 19: 2378-2387. http://dx. doi. org/10. 1101/gad. 1340305.
-
(2005)
Genes Dev
, vol.19
, pp. 2378-2387
-
-
Vrentas, C.E.1
Gaal, T.2
Ross, W.3
Ebright, R.H.4
Gourse, R.L.5
-
41
-
-
84887140246
-
The magic spot: A ppGpp binding site on E coli RNA polymerase responsible for regulation of transcription initiation
-
Ross W, Vrentas CE, Sanchez-Vazquez P, Gaal T, Gourse RL. 2013. The magic spot: a ppGpp binding site on E. coli RNA polymerase responsible for regulation of transcription initiation. Mol. Cell 50: 420-429. http://dx. doi. org/10. 1016/j. molcel. 2013. 03. 021.
-
(2013)
Mol. Cell
, vol.50
, pp. 420-429
-
-
Ross, W.1
Vrentas, C.E.2
Sanchez-Vazquez, P.3
Gaal, T.4
Gourse, R.L.5
-
42
-
-
69949098465
-
Escherichia coli DksA binds to free RNA polymerase with higher affinity than to RNA polymerase in an open complex
-
Lennon CW, Gaal T, Ross W, Gourse RL. 2009. Escherichia coli DksA binds to free RNA polymerase with higher affinity than to RNA polymerase in an open complex. J. Bacteriol. 191: 5854-5858. http://dx. doi. org/10. 1128/JB. 00621-09.
-
(2009)
J. Bacteriol
, vol.191
, pp. 5854-5858
-
-
Lennon, C.W.1
Gaal, T.2
Ross, W.3
Gourse, R.L.4
-
43
-
-
0035951305
-
Mechanism of regulation of transcription initiation by ppGpp I. Effects of ppGpp on transcription initiation in vivo and in vitro
-
Barker MM, Gaal T, Josaitis CA, Gourse RL. 2001. Mechanism of regulation of transcription initiation by ppGpp. I. Effects of ppGpp on transcription initiation in vivo and in vitro. J. Mol. Biol. 305: 673-688. http://dx. doi. org/10. 1006/jmbi. 2000. 4327.
-
(2001)
J. Mol. Biol
, vol.305
, pp. 673-688
-
-
Barker, M.M.1
Gaal, T.2
Josaitis, C.A.3
Gourse, R.L.4
-
44
-
-
35748963229
-
The carboxy-terminal coiled-coil of the RNA polymerase beta'-subunit is the main binding site for Gre factors
-
Vassylyeva MN, Svetlov V, Dearborn AD, Klyuyev S, Artsimovitch I, Vassylyev DG. 2007. The carboxy-terminal coiled-coil of the RNA polymerase beta'-subunit is the main binding site for Gre factors. EMBO Rep. 8: 1038-1043. http://dx. doi. org/10. 1038/sj. embor. 7401079.
-
(2007)
EMBO Rep
, vol.8
, pp. 1038-1043
-
-
Vassylyeva, M.N.1
Svetlov, V.2
Dearborn, A.D.3
Klyuyev, S.4
Artsimovitch, I.5
Vassylyev, D.G.6
-
45
-
-
84883276192
-
Characterization of a novel RNA polymerase mutant that alters DksA activity
-
Satory D, Halliday JA, Sivaramakrishnan P, Lua RC, Herman C. 2013. Characterization of a novel RNA polymerase mutant that alters DksA activity. J. Bacteriol. 195: 4187-4194. http://dx. doi. org/10. 1128/JB. 00382-13.
-
(2013)
J. Bacteriol
, vol.195
, pp. 4187-4194
-
-
Satory, D.1
Halliday, J.A.2
Sivaramakrishnan, P.3
Lua, R.C.4
Herman, C.5
-
46
-
-
67649552968
-
Super DksAs: Substitutions in DksA enhancing its effects on transcription initiation
-
Blankschien MD, Lee JH, Grace ED, Lennon CW, Halliday JA, Ross W, Gourse RL, Herman C. 2009. Super DksAs: substitutions in DksA enhancing its effects on transcription initiation. EMBO J. 28: 1720-1731. http://dx. doi. org/10. 1038/emboj. 2009. 126.
-
(2009)
EMBO J
, vol.28
, pp. 1720-1731
-
-
Blankschien, M.D.1
Lee, J.H.2
Grace, E.D.3
Lennon, C.W.4
Halliday, J.A.5
Ross, W.6
Gourse, R.L.7
Herman, C.8
-
47
-
-
59249092262
-
TraR, a homolog of a RNAP secondary channel interactor, modulates transcription
-
Blankschien MD, Potrykus K, Grace E, Choudhary A, Vinella D, Cashel M, Herman C. 2009. TraR, a homolog of a RNAP secondary channel interactor, modulates transcription. PLoS Genet. 5: e1000345. http://dx. doi. org/10. 1371/journal. pgen. 1000345.
-
(2009)
PLoS Genet
, vol.5
-
-
Blankschien, M.D.1
Potrykus, K.2
Grace, E.3
Choudhary, A.4
Vinella, D.5
Cashel, M.6
Herman, C.7
-
48
-
-
0043244877
-
Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase
-
Opalka N, Chlenov M, Chacon P, Rice WJ, Wriggers W, Darst SA. 2003. Structure and function of the transcription elongation factor GreB bound to bacterial RNA polymerase. Cell 114: 335-345. http://dx. doi. org/10. 1016/S0092-8674(03)00600-7.
-
(2003)
Cell
, vol.114
, pp. 335-345
-
-
Opalka, N.1
Chlenov, M.2
Chacon, P.3
Rice, W.J.4
Wriggers, W.5
Darst, S.A.6
-
49
-
-
0015816335
-
Variations in ppGpp levels in Rhodopseudomonas spheroides during adaptation to decreased light intensity
-
Eccleston ED, Gray ED. 1973. Variations in ppGpp levels in Rhodopseudomonas spheroides during adaptation to decreased light intensity. Biochem. Biophys. Res. Commun. 54: 1370-1376. http://dx. doi. org/10. 1016/0006-291X(73)91138-8.
-
(1973)
Biochem. Biophys. Res. Commun
, vol.54
, pp. 1370-1376
-
-
Eccleston, E.D.1
Gray, E.D.2
-
50
-
-
0020806086
-
Light-mediated regulation of phospholipid synthesis in Rhodopseudomonas sphaeroides
-
Campbell TB, Lueking DR. 1983. Light-mediated regulation of phospholipid synthesis in Rhodopseudomonas sphaeroides. J. Bacteriol. 155: 806-816.
-
(1983)
J. Bacteriol
, vol.155
, pp. 806-816
-
-
Campbell, T.B.1
Lueking, D.R.2
-
51
-
-
80051952474
-
ppGpp in Sinorhizobium meliloti: Biosynthesis in response to sudden nutritional downshifts and modulation of the transcriptome
-
Krol E, Becker A. 2011. ppGpp in Sinorhizobium meliloti: biosynthesis in response to sudden nutritional downshifts and modulation of the transcriptome. Mol. Microbiol. 81: 1233-1254. http://dx. doi. org/10. 1111/j. 1365-2958. 2011. 07752. x.
-
(2011)
Mol. Microbiol
, vol.81
, pp. 1233-1254
-
-
Krol, E.1
Becker, A.2
-
52
-
-
0023135728
-
Stringency in the absence of ppGpp accumulation in Rhodobacter sphaeroides
-
Acosta R, Lueking DR. 1987. Stringency in the absence of ppGpp accumulation in Rhodobacter sphaeroides. J. Bacteriol. 169: 908-912.
-
(1987)
J. Bacteriol
, vol.169
, pp. 908-912
-
-
Acosta, R.1
Lueking, D.R.2
-
53
-
-
79955026314
-
The complex logic of stringent response regulation in Caulobacter crescentus: Starvation signalling in an oligotrophic environment
-
Boutte CC, Crosson S. 2011. The complex logic of stringent response regulation in Caulobacter crescentus: starvation signalling in an oligotrophic environment. Mol. Microbiol. 80: 695-714. http://dx. doi. org/10. 1111/j. 1365-2958. 2011. 07602. x.
-
(2011)
Mol. Microbiol
, vol.80
, pp. 695-714
-
-
Boutte, C.C.1
Crosson, S.2
-
54
-
-
84875852284
-
Bacterial lifestyle shapes stringent response activation
-
Boutte CC, Crosson S. 2013. Bacterial lifestyle shapes stringent response activation. Trends Microbiol. 21: 174-180. http://dx. doi. org/10. 1016/j. tim. 2013. 01. 002.
-
(2013)
Trends Microbiol
, vol.21
, pp. 174-180
-
-
Boutte, C.C.1
Crosson, S.2
-
55
-
-
22544483526
-
The stringent response is required for amino acid and nitrate utilization, Nod factor regulation, nodulation, and nitrogen fixation in Rhizobium etli
-
Calderón-Flores A, Du Pont G, Huerta-Saquero A, Merchant-Larios H, Servín-González L, Durán S. 2005. The stringent response is required for amino acid and nitrate utilization, Nod factor regulation, nodulation, and nitrogen fixation in Rhizobium etli. J. Bacteriol. 187: 5075-5083. http://dx. doi. org/10. 1128/JB. 187. 15. 5075-5083. 2005.
-
(2005)
J. Bacteriol
, vol.187
, pp. 5075-5083
-
-
Calderón-Flores, A.1
Du Pont, G.2
Huerta-Saquero, A.3
Merchant-Larios, H.4
Servín-González, L.5
Durán, S.6
-
56
-
-
53849100653
-
SpoT regulates DnaA stability and initiation of DNA replication in carbon-starved Caulobacter crescentus
-
Lesley JA, Shapiro L. 2008. SpoT regulates DnaA stability and initiation of DNA replication in carbon-starved Caulobacter crescentus. J. Bacteriol. 190: 6867-6880. http://dx. doi. org/10. 1128/JB. 00700-08.
-
(2008)
J. Bacteriol
, vol.190
, pp. 6867-6880
-
-
Lesley, J.A.1
Shapiro, L.2
-
57
-
-
0347622751
-
Null mutation of HvrA compensates for loss of an essential relA/spoT-like gene in Rhodobacter capsulatus
-
Masuda S, Bauer CE. 2004. Null mutation of HvrA compensates for loss of an essential relA/spoT-like gene in Rhodobacter capsulatus. J. Bacteriol. 186: 235-239. http://dx. doi. org/10. 1128/JB. 186. 1. 235-239. 2004.
-
(2004)
J. Bacteriol
, vol.186
, pp. 235-239
-
-
Masuda, S.1
Bauer, C.E.2
-
58
-
-
0023703922
-
Construction, characterization, and complementation of a Pufmutant of Rhodobacter sphaeroides
-
Davis J, Donohue TJ, Kaplan S. 1988. Construction, characterization, and complementation of a Pufmutant of Rhodobacter sphaeroides. J. Bacteriol. 170: 320-329.
-
(1988)
J. Bacteriol
, vol.170
, pp. 320-329
-
-
Davis, J.1
Donohue, T.J.2
Kaplan, S.3
-
59
-
-
0027976503
-
prrA, a putative response regulator involved in oxygen regulation of photosynthesis gene expression in Rhodobacter sphaeroides
-
Eraso JM, Kaplan S. 1994. prrA, a putative response regulator involved in oxygen regulation of photosynthesis gene expression in Rhodobacter sphaeroides. J. Bacteriol. 176: 32-43.
-
(1994)
J. Bacteriol
, vol.176
, pp. 32-43
-
-
Eraso, J.M.1
Kaplan, S.2
-
60
-
-
0032567446
-
AppA, a redox regulator of photosystem formation in Rhodobacter sphaeroides 2.4. 1, is a flavoprotein. Identification of a novel FAD binding domain
-
Gomelsky M, Kaplan S. 1998. AppA, a redox regulator of photosystem formation in Rhodobacter sphaeroides 2. 4. 1, is a flavoprotein. Identification of a novel FAD binding domain. J. Biol. Chem. 273: 35319-35325.
-
(1998)
J. Biol. Chem
, vol.273
, pp. 35319-35325
-
-
Gomelsky, M.1
Kaplan, S.2
-
61
-
-
0024294317
-
Phenotypic and genetic characterization of cytochrome c2 deficient mutants of Rhodobacter sphaeroides
-
Donohue TJ, McEwan AG, Van Doren S, Crofts AR, Kaplan S. 1988. Phenotypic and genetic characterization of cytochrome c2 deficient mutants of Rhodobacter sphaeroides. Biochemistry 27: 1918-1925. http://dx. doi. org/10. 1021/bi00406a018.
-
(1988)
Biochemistry
, vol.27
, pp. 1918-1925
-
-
Donohue, T.J.1
McEwan, A.G.2
Van Doren, S.3
Crofts, A.R.4
Kaplan, S.5
-
62
-
-
14644440779
-
Transcriptome analysis of the Rhodobacter sphaeroides PpsR regulon: PpsR as a master regulator of photosystem development
-
Moskvin OV, Gomelsky L, Gomelsky M. 2005. Transcriptome analysis of the Rhodobacter sphaeroides PpsR regulon: PpsR as a master regulator of photosystem development. J. Bacteriol. 187: 2148-2156. http://dx. doi. org/10. 1128/JB. 187. 6. 2148-2156. 2005.
-
(2005)
J. Bacteriol
, vol.187
, pp. 2148-2156
-
-
Moskvin, O.V.1
Gomelsky, L.2
Gomelsky, M.3
-
63
-
-
47249107417
-
Role of the global transcriptional regulator PrrA in Rhodobacter sphaeroides 2.4. 1: Combined transcriptome and proteome analysis
-
Eraso JM, Roh JH, Zeng X, Callister SJ, Lipton MS, Kaplan S. 2008. Role of the global transcriptional regulator PrrA in Rhodobacter sphaeroides 2.4. 1: combined transcriptome and proteome analysis. J. Bacteriol. 190: 4831-4848. http://dx. doi. org/10. 1128/JB. 00301-08.
-
(2008)
J. Bacteriol
, vol.190
, pp. 4831-4848
-
-
Eraso, J.M.1
Roh, J.H.2
Zeng, X.3
Callister, S.J.4
Lipton, M.S.5
Kaplan, S.6
-
64
-
-
52949100970
-
Crystal structure of Escherichia coli Rnk, a new RNA polymerase-interacting protein
-
Lamour V, Rutherford ST, Kuznedelov K, Ramagopal UA, Gourse RL, Severinov K, Darst SA. 2008. Crystal structure of Escherichia coli Rnk, a new RNA polymerase-interacting protein. J. Mol. Biol. 383: 367-379. http://dx. doi. org/10. 1016/j. jmb. 2008. 08. 011.
-
(2008)
J. Mol. Biol
, vol.383
, pp. 367-379
-
-
Lamour, V.1
Rutherford, S.T.2
Kuznedelov, K.3
Ramagopal, U.A.4
Gourse, R.L.5
Severinov, K.6
Darst, S.A.7
-
65
-
-
0028289983
-
Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: Selection of defined deletions in the chromosome of Corynebacterium glutamicum
-
Schäfer A, Tauch A, Jäger W, Kalinowski J, Thierbach G, Pühler A. 1994. Small mobilizable multi-purpose cloning vectors derived from the Escherichia coli plasmids pK18 and pK19: selection of defined deletions in the chromosome of Corynebacterium glutamicum. Gene 145: 69-73. http://dx. doi. org/10. 1016/0378-1119(94)90324-7.
-
(1994)
Gene
, vol.145
, pp. 69-73
-
-
Schäfer, A.1
Tauch, A.2
Jäger, W.3
Kalinowski, J.4
Thierbach, G.5
Pühler, A.6
-
66
-
-
77953044867
-
A process for microbial hydrocarbon synthesis: Overproduction of fatty acids in Escherichia coli and catalytic conversion to alkanes
-
Lennen RM, Braden DJ, West RA, Dumesic JA, Pfleger BF. 2010. A process for microbial hydrocarbon synthesis: overproduction of fatty acids in Escherichia coli and catalytic conversion to alkanes. Biotechnol. Bioeng. 106: 193-202. http://dx. doi. org/10. 1002/bit. 22660.
-
(2010)
Biotechnol. Bioeng
, vol.106
, pp. 193-202
-
-
Lennen, R.M.1
Braden, D.J.2
West, R.A.3
Dumesic, J.A.4
Pfleger, B.F.5
-
67
-
-
84866951830
-
Convergence of the transcriptional responses to heat shock and singlet oxygen stresses
-
Dufour YS, Imam S, Koo BM, Green HA, Donohue TJ. 2012. Convergence of the transcriptional responses to heat shock and singlet oxygen stresses. PLoS Genet. 8: e1002929. http://dx. doi. org/10. 1371/journal. pgen. 1002929.
-
(2012)
PLoS Genet
, vol.8
-
-
Dufour, Y.S.1
Imam, S.2
Koo, B.M.3
Green, H.A.4
Donohue, T.J.5
-
68
-
-
0016748261
-
A procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography
-
Burgess RR, Jendrisak JJ. 1975. A procedure for the rapid, large-scale purification of Escherichia coli DNA-dependent RNA polymerase involving Polymin P precipitation and DNA-cellulose chromatography. Biochemistry 14: 4634-4638. http://dx. doi. org/10. 1021/bi00692a011.
-
(1975)
Biochemistry
, vol.14
, pp. 4634-4638
-
-
Burgess, R.R.1
Jendrisak, J.J.2
|