-
1
-
-
82455199121
-
What do expression dynamics tell us about the mechanism of transcription?
-
doi:10.1016/j.gde.2011.07.010
-
Larson DR (2011) What do expression dynamics tell us about the mechanism of transcription? Curr Opin Genet Dev 21: 591-599. doi:10.1016/j.gde.2011.07. 010.
-
(2011)
Curr Opin Genet Dev
, vol.21
, pp. 591-599
-
-
Larson, D.R.1
-
2
-
-
0037179716
-
Active genes are tri-methylated at K4 of histone H3
-
doi:10.1038/nature01080
-
Santos-Rosa H, Schneider R, Bannister AJ, Sherriff J, Bernstein BE, et al. (2002) Active genes are tri-methylated at K4 of histone H3. Nature 419: 407-411. doi:10.1038/nature01080.
-
(2002)
Nature
, vol.419
, pp. 407-411
-
-
Santos-Rosa, H.1
Schneider, R.2
Bannister, A.J.3
Sherriff, J.4
Bernstein, B.E.5
-
3
-
-
2942518343
-
Mapping global histone acetylation patterns to gene expression
-
DOI 10.1016/j.cell.2004.05.023, PII S0092867404005367
-
Kurdistani SK, Tavazoie S, Grunstein M (2004) Mapping global histone acetylation patterns to gene expression. Cell 117: 721-733. doi:10.1016/j.cell. 2004.05.023. (Pubitemid 38748889)
-
(2004)
Cell
, vol.117
, Issue.6
, pp. 721-733
-
-
Kurdistani, S.K.1
Tavazoie, S.2
Grunstein, M.3
-
4
-
-
26444508841
-
Single-nucleosome mapping of histone modifications in S. cerevisiae
-
doi:10.1371/journal.pbio.0030328
-
Liu CL, Kaplan T, Kim M, Buratowski S, Schreiber SL, et al. (2005) Single-nucleosome mapping of histone modifications in S. cerevisiae. PLoS Biol 3: e328. doi:10.1371/journal.pbio.0030328.
-
(2005)
PLoS Biol
, vol.3
-
-
Liu, C.L.1
Kaplan, T.2
Kim, M.3
Buratowski, S.4
Schreiber, S.L.5
-
5
-
-
23944462969
-
Genome-wide map of nucleosome acetylation and methylation in yeast
-
DOI 10.1016/j.cell.2005.06.026, PII S0092867405006458
-
Pokholok DK, Harbison CT, Levine S, Cole M, Hannett NM, et al. (2005) Genome-wide map of nucleosome acetylation and methylation in yeast. Cell 122: 517-527. doi:10.1016/j.cell.2005.06.026. (Pubitemid 41191151)
-
(2005)
Cell
, vol.122
, Issue.4
, pp. 517-527
-
-
Pokholok, D.K.1
Harbison, C.T.2
Levine, S.3
Cole, M.4
Hannett, N.M.5
Tong, I.L.6
Bell, G.W.7
Walker, K.8
Rolfe, P.A.9
Herbolsheimer, E.10
Zeitlinger, J.11
Lewitter, F.12
Gifford, D.K.13
Young, R.A.14
-
6
-
-
34249026300
-
High-Resolution Profiling of Histone Methylations in the Human Genome
-
DOI 10.1016/j.cell.2007.05.009, PII S0092867407006009
-
Barski A, Cuddapah S, Cui K, Roh T-Y, Schones DE, et al. (2007) High-resolution profiling of histone methylations in the human genome. Cell 129: 823-837. doi:10.1016/j.cell.2007.05.009. (Pubitemid 46802390)
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.-Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
7
-
-
77954816833
-
Multiple faces of the SAGA complex
-
doi:10.1016/j.ceb.2010.03.005
-
Koutelou E, Hirsch CL, Dent SY (2010) Multiple faces of the SAGA complex. Curr Opin Cell Biol 22: 374-382. doi:10.1016/j.ceb.2010.03.005.
-
(2010)
Curr Opin Cell Biol
, vol.22
, pp. 374-382
-
-
Koutelou, E.1
Hirsch, C.L.2
Dent, S.Y.3
-
8
-
-
6344270167
-
Global position and recruitment of HATs and HDACs in the yeast genome
-
DOI 10.1016/j.molcel.2004.09.021, PII S1097276504005763
-
Robert F, Pokholok DK, Hannett NM, Rinaldi NJ, Chandy M, et al. (2004) Global position and recruitment of HATs and HDACs in the yeast genome. Mol Cell 16: 199-209. doi:10.1016/j.molcel.2004.09.021. (Pubitemid 39388835)
-
(2004)
Molecular Cell
, vol.16
, Issue.2
, pp. 199-209
-
-
Robert, F.1
Pokholok, D.K.2
Hannett, N.M.3
Rinaldi, N.J.4
Chandy, M.5
Rolfe, A.6
Workman, J.L.7
Gifford, D.K.8
Young, R.A.9
-
9
-
-
33845968873
-
Gcn5 Promotes Acetylation, Eviction, and Methylation of Nucleosomes in Transcribed Coding Regions
-
DOI 10.1016/j.molcel.2006.11.020, PII S1097276506008148
-
Govind CK, Zhang F, Qiu H, Hofmeyer K, Hinnebusch AG (2007) Gcn5 promotes acetylation, eviction, and methylation of nucleosomes in transcribed coding regions. Mol Cell 25: 31-42. doi:10.1016/j.molcel.2006.11.020. (Pubitemid 46049060)
-
(2007)
Molecular Cell
, vol.25
, Issue.1
, pp. 31-42
-
-
Govind, C.K.1
Zhang, F.2
Qiu, H.3
Hofmeyer, K.4
Hinnebusch, A.G.5
-
10
-
-
79960407300
-
Posttranscription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation
-
doi:10.1101/gad.2046211
-
Weake VM, Dyer JO, Seidel C, Box A, Swanson SK, et al. (2011) Posttranscription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. Genes Dev 25: 1499-1509. doi:10.1101/gad. 2046211.
-
(2011)
Genes Dev
, vol.25
, pp. 1499-1509
-
-
Weake, V.M.1
Dyer, J.O.2
Seidel, C.3
Box, A.4
Swanson, S.K.5
-
11
-
-
0034461003
-
Effects of histone tail domains on the rate of transcriptional elongation through a nucleosome
-
DOI 10.1128/MCB.20.23.8866-8878.2000
-
Protacio RU, Li G, Lowary PT, Widom J (2000) Effects of histone tail domains on the rate of transcriptional elongation through a nucleosome. Mol Cell Biol 20: 8866-8878. (Pubitemid 32245919)
-
(2000)
Molecular and Cellular Biology
, vol.20
, Issue.23
, pp. 8866-8878
-
-
Protacio, R.U.1
Li, G.2
Lowary, P.T.3
Widom, J.4
-
12
-
-
33750453345
-
RSC Exploits Histone Acetylation to Abrogate the Nucleosomal Block to RNA Polymerase II Elongation
-
DOI 10.1016/j.molcel.2006.09.012, PII S1097276506006605
-
Carey M, Li B, Workman JL (2006) RSC exploits histone acetylation to abrogate the nucleosomal block to RNA polymerase II elongation. Mol Cell 24: 481-487. doi:10.1016/j.molcel.2006.09.012. (Pubitemid 44647905)
-
(2006)
Molecular Cell
, vol.24
, Issue.3
, pp. 481-487
-
-
Carey, M.1
Li, B.2
Workman, J.L.3
-
13
-
-
0037123767
-
Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases
-
DOI 10.1016/S0092-8674(02)00746-8
-
Robyr D, Suka Y, Xenarios I, Kurdistani SK, Wang A, et al. (2002) Microarray deacetylation maps determine genome-wide functions for yeast histone deacetylases. Cell 109: 437-446. (Pubitemid 34564471)
-
(2002)
Cell
, vol.109
, Issue.4
, pp. 437-446
-
-
Robyr, D.1
Suka, Y.2
Xenarios, I.3
Kurdistani, S.K.4
Wang, A.5
Suka, N.6
Grunstein, M.7
-
14
-
-
84864312275
-
Expression Noise and Acetylation Profiles Distinguish HDAC Functions
-
doi:10.1016/j.molcel.2012.05.008
-
Weinberger L, Voichek Y, Tirosh I, Hornung G, Amit I, et al. (2012) Expression Noise and Acetylation Profiles Distinguish HDAC Functions. Mol Cell 47: 193-202. doi:10.1016/j.molcel.2012.05.008.
-
(2012)
Mol Cell
, vol.47
, pp. 193-202
-
-
Weinberger, L.1
Voichek, Y.2
Tirosh, I.3
Hornung, G.4
Amit, I.5
-
15
-
-
84872398729
-
Transcription-associated histone modifications and cryptic transcription
-
doi:10.1016/j.bbagrm.2012.08.008
-
Smolle M, Workman JL (2013) Transcription-associated histone modifications and cryptic transcription. Biochim Biophys Acta 1829: 84-97. doi:10.1016/j.bbagrm.2012.08.008.
-
(2013)
Biochim Biophys Acta
, vol.1829
, pp. 84-97
-
-
Smolle, M.1
Workman, J.L.2
-
16
-
-
84861870951
-
The COMPASS family of histone H3K4 methylases: Mechanisms of regulation in development and disease pathogenesis
-
doi:10.1146/annurev-biochem-051710-134100
-
Shilatifard A (2012) The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis. Annu Rev Biochem 81: 65-95. doi:10.1146/annurev-biochem-051710-134100.
-
(2012)
Annu Rev Biochem
, vol.81
, pp. 65-95
-
-
Shilatifard, A.1
-
17
-
-
36849046285
-
Histone Crosstalk between H2B Monoubiquitination and H3 Methylation Mediated by COMPASS
-
DOI 10.1016/j.cell.2007.09.046, PII S0092867407013505
-
Lee J-S, Shukla A, Schneider J, Swanson SK, Washburn MP, et al. (2007) Histone crosstalk between H2B monoubiquitination and H3 methylation mediated by COMPASS. Cell 131: 1084-1096. doi:10.1016/j.cell.2007.09.046. (Pubitemid 350235018)
-
(2007)
Cell
, vol.131
, Issue.6
, pp. 1084-1096
-
-
Lee, J.-S.1
Shukla, A.2
Schneider, J.3
Swanson, S.K.4
Washburn, M.P.5
Florens, L.6
Bhaumik, S.R.7
Shilatifard, A.8
-
18
-
-
0037524702
-
The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: Linking transcriptional elongation to histone methylation
-
DOI 10.1016/S1097-2765(03)00091-1
-
Krogan NJ, Dover J, Wood A, Schneider J, Heidt J, et al. (2003) The Paf1 complex is required for histone H3 methylation by COMPASS and Dot1p: linking transcriptional elongation to histone methylation. Mol Cell 11: 721-729. (Pubitemid 36385125)
-
(2003)
Molecular Cell
, vol.11
, Issue.3
, pp. 721-729
-
-
Krogan, N.J.1
Dover, J.2
Wood, A.3
Schneider, J.4
Heidt, J.5
Boateng, M.A.6
Dean, K.7
Ryan, O.W.8
Golshani, A.9
Johnston, M.10
Greenblatt, J.F.11
Shilatifard, A.12
-
19
-
-
79960621198
-
Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation
-
doi:10.1038/emboj.2011.193
-
Bian C, Xu C, Ruan J, Lee KK, Burke TL, et al. (2011) Sgf29 binds histone H3K4me2/3 and is required for SAGA complex recruitment and histone H3 acetylation. EMBO J 30: 2829-2842. doi:10.1038/emboj.2011.193.
-
(2011)
EMBO J
, vol.30
, pp. 2829-2842
-
-
Bian, C.1
Xu, C.2
Ruan, J.3
Lee, K.K.4
Burke, T.L.5
-
20
-
-
0242361623
-
Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8
-
doi:10.1101/gad.1144003
-
Henry KW (2003) Transcriptional activation via sequential histone H2B ubiquitylation and deubiquitylation, mediated by SAGA-associated Ubp8. Genes Dev 17: 2648-2663. doi:10.1101/gad.1144003.
-
(2003)
Genes Dev
, vol.17
, pp. 2648-2663
-
-
Henry, K.W.1
-
21
-
-
79955949044
-
The Specificity and Topology of Chromatin Interaction Pathways in Yeast
-
doi:10.1016/j.molcel.2011.03.026
-
Lenstra TL, Benschop JJ, Kim T, Schulze JM, Brabers NACH, et al. (2011) The Specificity and Topology of Chromatin Interaction Pathways in Yeast. Mol Cell 42: 536-549. doi:10.1016/j.molcel.2011.03.026.
-
(2011)
Mol Cell
, vol.42
, pp. 536-549
-
-
Lenstra, T.L.1
Benschop, J.J.2
Kim, T.3
Schulze, J.M.4
Brabers, N.A.C.H.5
-
22
-
-
33749037129
-
Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification
-
DOI 10.1073/pnas.0601852103
-
Lee S-I, Pe'er D, Dudley AM, Church GM, Koller D (2006) Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification. Proceedings of the National Academy of Sciences 103: 14062-14067. doi:10.1073/pnas.0601852103. (Pubitemid 44452980)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.38
, pp. 14062-14067
-
-
Lee, S.-I.1
Pe'er, D.2
Dudley, A.M.3
Church, G.M.4
Koller, D.5
-
23
-
-
38649094557
-
Epigenetic regulation and the variability of gene expression
-
DOI 10.1038/ng.2007.58, PII NG200758
-
Choi JK, Kim Y-J (2008) Epigenetic regulation and the variability of gene expression. Nat Genet 40: 141-147. doi:10.1038/ng.2007.58. (Pubitemid 351171392)
-
(2008)
Nature Genetics
, vol.40
, Issue.2
, pp. 141-147
-
-
Choi, J.K.1
Kim, Y.-J.2
-
24
-
-
77952245290
-
Divergence of nucleosome positioning between two closely related yeast species: Genetic basis and functional consequences
-
doi:10.1038/msb.2010.20
-
Tirosh I, Sigal N, Barkai N (2010) Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences. Mol Syst Biol 6: 365. doi:10.1038/msb.2010.20.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 365
-
-
Tirosh, I.1
Sigal, N.2
Barkai, N.3
-
25
-
-
4143118944
-
How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution?
-
DOI 10.1016/j.tig.2004.07.006, PII S0168952504001866
-
Zhang Z, Gu J, Gu X (2004) How much expression divergence after yeast gene duplication could be explained by regulatory motif evolution? Trends in Genetics 20: 403-407. doi:10.1016/j.tig.2004.07.006. (Pubitemid 39094567)
-
(2004)
Trends in Genetics
, vol.20
, Issue.9
, pp. 403-407
-
-
Zhang, Z.1
Gu, J.2
Gu, X.3
-
26
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
doi:10.1186/gb-2009-10-3-r25
-
Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10: R25. doi:10.1186/gb-2009-10-3-r25.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
27
-
-
43749088127
-
Two strategies for gene regulation by promoter nucleosomes
-
DOI 10.1101/gr.076059.108
-
Tirosh I, Barkai N (2008) Two strategies for gene regulation by promoter nucleosomes. Genome Res 18: 1084-1091. doi:10.1101/gr.076059.108. (Pubitemid 351931159)
-
(2008)
Genome Research
, vol.18
, Issue.7
, pp. 1084-1091
-
-
Tirosh, I.1
Barkai, N.2
-
28
-
-
33745583768
-
A genetic signature of interspecies variations in gene expression
-
DOI 10.1038/ng1819, PII N1819
-
Tirosh I, Weinberger A, Carmi M, Barkai N (2006) A genetic signature of interspecies variations in gene expression. Nat Genet 38: 830-834. doi:10.1038/ng1819. (Pubitemid 43980606)
-
(2006)
Nature Genetics
, vol.38
, Issue.7
, pp. 830-834
-
-
Tirosh, I.1
Weinberger, A.2
Carmi, M.3
Barkai, N.4
-
29
-
-
33747379083
-
The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle
-
doi:10.1101/gad.1450606
-
Pramila T, Wu W, Miles S, Noble WS, Breeden LL (2006) The Forkhead transcription factor Hcm1 regulates chromosome segregation genes and fills the S-phase gap in the transcriptional circuitry of the cell cycle. Genes Dev 20: 2266-2278. doi:10.1101/gad.1450606.
-
(2006)
Genes Dev
, vol.20
, pp. 2266-2278
-
-
Pramila, T.1
Wu, W.2
Miles, S.3
Noble, W.S.4
Breeden, L.L.5
-
30
-
-
0036699526
-
Revealing modular organization in the yeast transcriptional network
-
DOI 10.1038/ng941
-
Ihmels J, Friedlander G, Bergmann S, Sarig O, Ziv Y, et al. (2002) Revealing modular organization in the yeast transcriptional network. Nat Genet 31: 370-377. doi:10.1038/ng941. (Pubitemid 35154445)
-
(2002)
Nature Genetics
, vol.31
, Issue.4
, pp. 370-377
-
-
Ihmels, J.1
Friedlander, G.2
Bergmann, S.3
Sarig, O.4
Ziv, Y.5
Barkai, N.6
-
31
-
-
79957929301
-
Stable and dynamic nucleosome states during a meiotic developmental process
-
doi:10.1101/gr.117465.110
-
Zhang L, Ma H, Pugh BF (2011) Stable and dynamic nucleosome states during a meiotic developmental process. Genome Res 21: 875-884. doi:10.1101/gr.117465. 110.
-
(2011)
Genome Res
, vol.21
, pp. 875-884
-
-
Zhang, L.1
Ma, H.2
Pugh, B.F.3
-
32
-
-
84868585917
-
Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae
-
doi:10.1073/pnas.1202070109
-
Maltby VE, Martin BJE, Brind'Amour J, Chruscicki AT, McBurney KL, et al. (2012) Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae. Proceedings of the National Academy of Sciences 109: 18505-18510. doi:10.1073/pnas.1202070109.
-
(2012)
Proceedings of the National Academy of Sciences
, vol.109
, pp. 18505-18510
-
-
Maltby, V.E.1
Martin, B.J.E.2
Brind'Amour, J.3
Chruscicki, A.T.4
McBurney, K.L.5
-
33
-
-
75349098018
-
A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
-
doi:10.1186/gb-2009-10-10-r109
-
Jiang C, Pugh BF (2009) A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome. Genome Biol 10: R109. doi:10.1186/gb-2009-10-10-r109.
-
(2009)
Genome Biol
, vol.10
-
-
Jiang, C.1
Pugh, B.F.2
-
34
-
-
33746457753
-
Enhanced Histone Acetylation and Transcription: A Dynamic Perspective
-
DOI 10.1016/j.molcel.2006.06.017, PII S1097276506004321
-
Clayton AL, Hazzalin CA, Mahadevan LC (2006) Enhanced histone acetylation and transcription: a dynamic perspective. Mol Cell 23: 289-296. doi:10.1016/j.molcel.2006.06.017. (Pubitemid 44128853)
-
(2006)
Molecular Cell
, vol.23
, Issue.3
, pp. 289-296
-
-
Clayton, A.L.1
Hazzalin, C.A.2
Mahadevan, L.C.3
-
35
-
-
20444375490
-
Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription
-
DOI 10.1016/j.molcel.2005.05.009, PII S1097276505013158
-
Morillon A, Karabetsou N, Nair A, Mellor J (2005) Dynamic lysine methylation on histone H3 defines the regulatory phase of gene transcription. Mol Cell 18: 723-734. doi:10.1016/j.molcel.2005.05.009. (Pubitemid 40804807)
-
(2005)
Molecular Cell
, vol.18
, Issue.6
, pp. 723-734
-
-
Morillon, A.1
Karabetsou, N.2
Nair, A.3
Mellor, J.4
-
36
-
-
63449105244
-
Intrinsic variability of gene expression encoded in nucleosome positioning sequences
-
doi:10.1038/ng.319
-
Choi JK, Kim Y-J (2009) Intrinsic variability of gene expression encoded in nucleosome positioning sequences. Nat Genet 41: 498-503. doi:10.1038/ng.319.
-
(2009)
Nat Genet
, vol.41
, pp. 498-503
-
-
Choi, J.K.1
Kim, Y.-J.2
-
37
-
-
71149117336
-
Fungal regulatory evolution: Cis and trans in the balance
-
doi:10.1016/j.febslet.2009.11.032
-
Thompson DA, Regev A (2009) Fungal regulatory evolution: cis and trans in the balance. FEBS Lett 583: 7-7. doi:10.1016/j.febslet.2009.11.032.
-
(2009)
FEBS Lett
, vol.583
, pp. 7-7
-
-
Thompson, D.A.1
Regev, A.2
-
38
-
-
65549086559
-
A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation
-
doi:10.1126/science.1169766
-
Tirosh I, Reikhav S, Levy AA, Barkai N (2009) A Yeast Hybrid Provides Insight into the Evolution of Gene Expression Regulation. Science 324: 659-662. doi:10.1126/science.1169766.
-
(2009)
Science
, vol.324
, pp. 659-662
-
-
Tirosh, I.1
Reikhav, S.2
Levy, A.A.3
Barkai, N.4
-
39
-
-
77649140924
-
Methylation of H3K4 Is required for inheritance of active transcriptional states
-
doi:10.1016/j.cub.2010.01.017
-
Muramoto T, Müller I, Thomas G, Melvin A, Chubb JR (2010) Methylation of H3K4 Is required for inheritance of active transcriptional states. Curr Biol 20: 397-406. doi:10.1016/j.cub.2010.01.017.
-
(2010)
Curr Biol
, vol.20
, pp. 397-406
-
-
Muramoto, T.1
Müller, I.2
Thomas, G.3
Melvin, A.4
Chubb, J.R.5
-
40
-
-
37749051130
-
Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription
-
doi:10.1038/ncb1674
-
Ng RK, Gurdon JB (2008) Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription. Nat Cell Biol 10: 102-109. doi:10.1038/ncb1674.
-
(2008)
Nat Cell Biol
, vol.10
, pp. 102-109
-
-
Ng, R.K.1
Gurdon, J.B.2
-
41
-
-
79959980701
-
Loss of H3K4 methylation destabilizes gene expression patterns and physiological functions in adult murine cardiomyocytes
-
doi:10.1172/JCI44641DS1
-
Stein AB, Jones TA, Herron TJ, Patel SR, Day SM, et al. (2011) Loss of H3K4 methylation destabilizes gene expression patterns and physiological functions in adult murine cardiomyocytes. J Clin Invest 121: 2641-2650. doi:10.1172/JCI44641DS1.
-
(2011)
J Clin Invest
, vol.121
, pp. 2641-2650
-
-
Stein, A.B.1
Jones, T.A.2
Herron, T.J.3
Patel, S.R.4
Day, S.M.5
-
42
-
-
84873086126
-
Chromatin marks identify critical cell types for fine mapping complex trait variants
-
doi:10.1038/ng.2504
-
Trynka G, Sandor C, Han B, Xu H, Stranger BE, et al. (2013) Chromatin marks identify critical cell types for fine mapping complex trait variants. Nat Genet 45: 124-130. doi:10.1038/ng.2504.
-
(2013)
Nat Genet
, vol.45
, pp. 124-130
-
-
Trynka, G.1
Sandor, C.2
Han, B.3
Xu, H.4
Stranger, B.E.5
-
43
-
-
78049246250
-
Fast signals and slow marks: The dynamics of histone modifications
-
doi:10.1016/j.tibs.2010.05.006
-
Barth TK, Imhof A (2010) Fast signals and slow marks: the dynamics of histone modifications. Trends Biochem Sci: 1-9. doi:10.1016/j.tibs.2010.05.006.
-
(2010)
Trends Biochem Sci
, pp. 1-9
-
-
Barth, T.K.1
Imhof, A.2
-
44
-
-
0037087576
-
Dynamics of global histone acetylation and deacetylation in vivo: Rapid restoration of normal histone acetylation status upon removal of activators and repressors
-
DOI 10.1101/gad.967302
-
Katan-Khaykovich Y, Struhl K (2002) Dynamics of global histone acetylation and deacetylation in vivo: rapid restoration of normal histone acetylation status upon removal of activators and repressors. Genes Dev 16: 743-752. doi:10.1101/gad.967302. (Pubitemid 34274043)
-
(2002)
Genes and Development
, vol.16
, Issue.6
, pp. 743-752
-
-
Katan-Khaykovich, Y.1
Struhl, K.2
-
45
-
-
0344022572
-
Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
-
DOI 10.1016/S1097-2765(03)00092-3
-
Ng HH, Robert F, Young RA, Struhl K (2003) Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol Cell 11: 709-719. (Pubitemid 36385124)
-
(2003)
Molecular Cell
, vol.11
, Issue.3
, pp. 709-719
-
-
Ng, H.H.1
Robert, F.2
Young, R.A.3
Struhl, K.4
-
46
-
-
84864626931
-
A key role for chd1 in histone h3 dynamics at the 3′ ends of long genes in yeast
-
doi:10.1371/journal.pgen.1002811
-
Armstrong JA, Radman-Livaja M, Quan TK, Valenzuela L, Van Welsem T, et al. (2012) A key role for chd1 in histone h3 dynamics at the 3′ ends of long genes in yeast. PLoS Genet 8: e1002811. doi:10.1371/journal.pgen.1002811.
-
(2012)
PLoS Genet
, vol.8
-
-
Armstrong, J.A.1
Radman-Livaja, M.2
Quan, T.K.3
Valenzuela, L.4
Van Welsem, T.5
-
47
-
-
84870288931
-
Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles
-
doi:10.1371/journal.pbio.1001442
-
Le Martelot G, Canella D, Symul L, Migliavacca E, Gilardi F, et al. (2012) Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles. PLoS Biol 10: e1001442. doi:10.1371/journal.pbio.1001442.
-
(2012)
PLoS Biol
, vol.10
-
-
Le Martelot, G.1
Canella, D.2
Symul, L.3
Migliavacca, E.4
Gilardi, F.5
-
48
-
-
80053411336
-
Recent transcription-induced histone H3 lysine 4 (H3K4) methylation inhibits gene reactivation
-
doi:10.1074/jbc.M111.273128
-
Zhou BO, Zhou J-Q (2011) Recent transcription-induced histone H3 lysine 4 (H3K4) methylation inhibits gene reactivation. J Biol Chem 286: 34770-34776. doi:10.1074/jbc.M111.273128.
-
(2011)
J Biol Chem
, vol.286
, pp. 34770-34776
-
-
Zhou, B.O.1
Zhou, J.-Q.2
-
49
-
-
57849140661
-
Divergent transcription from active promoters
-
doi:10.1126/science.1162253
-
Seila AC, Calabrese JM, Levine SS, Yeo GW, Rahl PB, et al. (2008) Divergent transcription from active promoters. Science 322: 1849-1851. doi:10.1126/science.1162253.
-
(2008)
Science
, vol.322
, pp. 1849-1851
-
-
Seila, A.C.1
Calabrese, J.M.2
Levine, S.S.3
Yeo, G.W.4
Rahl, P.B.5
-
50
-
-
84866887452
-
Two distinct repressive mechanisms for histone 3 lysine 4 methylation through promoting 3′-end antisense transcription
-
doi:10.1371/journal.pgen.1002952
-
Margaritis T, Oreal V, Brabers N, Maestroni L, Vitaliano-Prunier A, et al. (2012) Two distinct repressive mechanisms for histone 3 lysine 4 methylation through promoting 3′-end antisense transcription. PLoS Genet 8: e1002952. doi:10.1371/journal.pgen.1002952.
-
(2012)
PLoS Genet
, vol.8
-
-
Margaritis, T.1
Oreal, V.2
Brabers, N.3
Maestroni, L.4
Vitaliano-Prunier, A.5
-
51
-
-
84864452351
-
Systematic Dissection of Roles for Chromatin Regulators in a Yeast Stress Response
-
doi:10.1371/journal.pbio.1001369
-
Weiner A, Chen HV, Liu CL, Rahat A, Klien A, et al. (2012) Systematic Dissection of Roles for Chromatin Regulators in a Yeast Stress Response. PLoS Biol 10: e1001369. doi:10.1371/journal.pbio.1001369.
-
(2012)
PLoS Biol
, vol.10
-
-
Weiner, A.1
Chen, H.V.2
Liu, C.L.3
Rahat, A.4
Klien, A.5
-
52
-
-
3543023310
-
Evidence for nucleosome depletion at active regulatory regions genome-wide
-
DOI 10.1038/ng1400
-
Lee C-K, Shibata Y, Rao B, Strahl BD, Lieb JD (2004) Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat Genet 36: 900-905. doi:10.1038/ng1400. (Pubitemid 39014111)
-
(2004)
Nature Genetics
, vol.36
, Issue.8
, pp. 900-905
-
-
Lee, C.-K.1
Shibata, Y.2
Rao, B.3
Strahl, B.D.4
Lieb, J.D.5
-
53
-
-
41749091787
-
Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation
-
doi:10.1371/journal.pbio.0060065
-
Shivaswamy S, Bhinge A, Zhao Y, Jones S, Hirst M, et al. (2008) Dynamic remodeling of individual nucleosomes across a eukaryotic genome in response to transcriptional perturbation. PLoS Biol 6: e65. doi:10.1371/journal.pbio. 0060065.
-
(2008)
PLoS Biol
, vol.6
-
-
Shivaswamy, S.1
Bhinge, A.2
Zhao, Y.3
Jones, S.4
Hirst, M.5
-
54
-
-
84859269739
-
SAGA function in tissue-specific gene expression
-
doi:10.1016/j.tcb.2011.11.005
-
Weake VM, Workman JL (2012) SAGA function in tissue-specific gene expression. Trends Cell Biol 22: 177-184. doi:10.1016/j.tcb.2011.11.005.
-
(2012)
Trends Cell Biol
, vol.22
, pp. 177-184
-
-
Weake, V.M.1
Workman, J.L.2
-
55
-
-
1542285166
-
A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae
-
DOI 10.1016/S1097-2765(04)00087-5, PII S1097276504000875
-
Pugh BF, Huisinga KL (2004) A genome-wide housekeeping role for TFIID and a highly regulated stress-related role for SAGA in Saccharomyces cerevisiae. Mol Cell 13: 573-585. (Pubitemid 38299384)
-
(2004)
Molecular Cell
, vol.13
, Issue.4
, pp. 573-585
-
-
Huisinga, K.L.1
Pugh, B.F.2
-
56
-
-
67649671742
-
The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress
-
doi:10.1186/gb-2009-10-5-r57
-
Alejandro-Osorio AL, Huebert DJ, Porcaro DT, Sonntag ME, Nillasithanukroh S, et al. (2009) The histone deacetylase Rpd3p is required for transient changes in genomic expression in response to stress. Genome Biol 10: R57. doi:10.1186/gb-2009-10-5-r57.
-
(2009)
Genome Biol
, vol.10
-
-
Alejandro-Osorio, A.L.1
Huebert, D.J.2
Porcaro, D.T.3
Sonntag, M.E.4
Nillasithanukroh, S.5
-
57
-
-
0037111879
-
Requirement of Hos2 histone deacetylase for gene activity in yeast
-
DOI 10.1126/science.1077790
-
Wang A, Kurdistani SK, Grunstein M (2002) Requirement of Hos2 histone deacetylase for gene activity in yeast. Science 298: 1412-1414. doi:10.1126/science.1077790. (Pubitemid 35346139)
-
(2002)
Science
, vol.298
, Issue.5597
, pp. 1412-1414
-
-
Wang, A.1
Kurdistani, S.K.2
Grunstein, M.3
-
58
-
-
77952379239
-
Natural single-nucleosome epi-polymorphisms in yeast
-
doi:10.1371/journal.pgen.1000913
-
Nagarajan M, Veyrieras J-B, De Dieuleveult M, Bottin H, Fehrmann S, et al. (2010) Natural single-nucleosome epi-polymorphisms in yeast. PLoS Genet 6: e1000913. doi:10.1371/journal.pgen.1000913.
-
(2010)
PLoS Genet
, vol.6
-
-
Nagarajan, M.1
Veyrieras, J.-B.2
De Dieuleveult, M.3
Bottin, H.4
Fehrmann, S.5
-
59
-
-
0036863542
-
Histone acetylation regulates the time of replication origin firing
-
DOI 10.1016/S1097-2765(02)00702-5
-
Lucas I, Grunstein M, Rubbi L, Brewer BJ, Vogelauer M (2002) Histone acetylation regulates the time of replication origin firing. Mol Cell 10: 1223-1233. (Pubitemid 35453838)
-
(2002)
Molecular Cell
, vol.10
, Issue.5
, pp. 1223-1233
-
-
Vogelauer, M.1
Rubbi, L.2
Lucas, I.3
Brewer, B.J.4
Grunstein, M.5
-
60
-
-
84872249432
-
Spp1, a member of the Set1 Complex, promotes meiotic DSB formation in promoters by tethering histone H3K4 methylation sites to chromosome axes
-
doi:10.1016/j.molcel.2012.11.008
-
Sommermeyer V, Béneut C, Chaplais E, Serrentino ME, Borde V (2013) Spp1, a member of the Set1 Complex, promotes meiotic DSB formation in promoters by tethering histone H3K4 methylation sites to chromosome axes. Mol Cell 49: 43-54. doi:10.1016/j.molcel.2012.11.008.
-
(2013)
Mol Cell
, vol.49
, pp. 43-54
-
-
Sommermeyer, V.1
Béneut, C.2
Chaplais, E.3
Serrentino, M.E.4
Borde, V.5
|