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Volumn 11, Issue 1, 2014, Pages

Proteogenomic analysis of pathogenic yeast cryptococcus neoformans using high resolution mass spectrometry

Author keywords

Antifungal drugs; Computational prediction; Cryptococcal meningitis; Fungal genomics; Fungal infection; Genome annotation

Indexed keywords

ARTICLE; COMPUTER PREDICTION; CONTROLLED STUDY; CRYPTOCOCCUS NEOFORMANS; ELECTROSPRAY MASS SPECTROMETRY; FUNGAL STRAIN; GENE SEQUENCE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PREDICTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEOMICS; REAL TIME POLYMERASE CHAIN REACTION; REVERSED PHASE LIQUID CHROMATOGRAPHY; TRANSCRIPTION INITIATION SITE; VALIDATION STUDY;

EID: 84903795994     PISSN: 15426416     EISSN: 15590275     Source Type: Journal    
DOI: 10.1186/1559-0275-11-5     Document Type: Article
Times cited : (17)

References (53)
  • 1
    • 0028786641 scopus 로고
    • Cryptococcosis in the era of aids-100 years after the discovery of cryptococcus neoformans
    • Mitchell TG, Perfect JR: Cryptococcosis in the era of AIDS-100 years after the discovery of Cryptococcus neoformans. Clin Microbiol Rev 1995, 8:515-548.
    • (1995) Clin Microbiol Rev , vol.8 , pp. 515-548
    • Mitchell, T.G.1    Perfect, J.R.2
  • 2
    • 62349130224 scopus 로고    scopus 로고
    • Estimation of the current global burden of cryptococcal meningitis among persons living with HIV/AIDS
    • Park BJ, Wannemuehler KA, Marston BJ, Govender N, Pappas PG, Chiller TM: Estimation of the current global burden of cryptococcal meningitis among persons living with HIV/AIDS. AIDS 2009, 23:525-530.
    • (2009) AIDS , vol.23 , pp. 525-530
    • Park, B.J.1    Wannemuehler, K.A.2    Marston, B.J.3    Govender, N.4    Pappas, P.G.5    Chiller, T.M.6
  • 3
    • 0033058352 scopus 로고    scopus 로고
    • Cryptococcus neoformans var. Grubii: Separate varietal status for Cryptococcus neoformans serotype A isolates
    • Franzot SP, Salkin IF, Casadevall A: Cryptococcus neoformans var. grubii: separate varietal status for Cryptococcus neoformans serotype A isolates. J Clin Microbiol 1999, 37:838-840. (Pubitemid 29091323)
    • (1999) Journal of Clinical Microbiology , vol.37 , Issue.3 , pp. 838-840
    • Franzot, S.P.1    Salkin, I.F.2    Casadevall, A.3
  • 4
    • 33750289222 scopus 로고    scopus 로고
    • The biology of the Cryptococcus neoformans species complex
    • DOI 10.1146/annurev.micro.60.080805.142102
    • Lin X, Heitman J: The biology of the Cryptococcus neoformans species complex. Annu Rev Microbiol 2006, 60:69-105. (Pubitemid 44627941)
    • (2006) Annual Review of Microbiology , vol.60 , pp. 69-105
    • Lin, X.1    Heitman, J.2
  • 8
    • 0034061496 scopus 로고    scopus 로고
    • Prevalence of Cryptococcus neoformans var. Neoformans (serotype D) and Cryptococcus neoformans var. Grubii (serotype A) isolates in New York City
    • Steenbergen JN, Casadevall A: Prevalence of Cryptococcus neoformans var. neoformans (Serotype D) and Cryptococcus neoformans var. grubii (Serotype A) isolates in New York City. J Clin Microbiol 2000, 38:1974-1976. (Pubitemid 30253948)
    • (2000) Journal of Clinical Microbiology , vol.38 , Issue.5 , pp. 1974-1976
    • Steenbergen, J.N.1    Casadevall, A.2
  • 9
    • 1842863481 scopus 로고    scopus 로고
    • Serotype distribution of Cryptococcus neoformans in patients in a tertiary care center in India
    • DOI 10.1080/13693780310001615376
    • Banerjee U, Datta K, Casadevall A: Serotype distribution of Cryptococcus neoformans in patients in a tertiary care center in India. Med Mycol 2004, 42:181-186. (Pubitemid 38489028)
    • (2004) Medical Mycology , vol.42 , Issue.2 , pp. 181-186
    • Banerjee, U.1    Datta, K.2    Casadevall, A.3
  • 13
    • 77957237701 scopus 로고    scopus 로고
    • Proteogenomics to discover the full coding content of genomes: A computational perspective
    • Castellana N, Bafna V: Proteogenomics to discover the full coding content of genomes: A computational perspective. J Proteomics 2010, 73:2124-2135.
    • (2010) J Proteomics , vol.73 , pp. 2124-2135
    • Castellana, N.1    Bafna, V.2
  • 14
    • 0033167908 scopus 로고    scopus 로고
    • Nucleotide sequence databases: A gold mine for biologists
    • DOI 10.1016/S0968-0004(99)01400-0, PII S0968000499014000
    • Pandey A, Lewitter F: Nucleotide sequence databases: A gold mine for biologists. Trends Biochem Sci 1999, 24:276-280. (Pubitemid 29301692)
    • (1999) Trends in Biochemical Sciences , vol.24 , Issue.7 , pp. 276-280
    • Pandey, A.1    Lewitter, F.2
  • 21
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • DOI 10.1038/85686
    • Washburn MP, Wolters D, Yates JR 3rd: Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat Biotechnol 2001, 19:242-247. (Pubitemid 32220565)
    • (2001) Nature Biotechnology , vol.19 , Issue.3 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates, J.R.3
  • 25
    • 48249147316 scopus 로고    scopus 로고
    • High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using mycobacterium tuberculosis as an example
    • de Souza GA, Malen H, Softeland T, Saelensminde G, Prasad S, Jonassen I, Wiker HG: High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example. BMC Genomics 2008, 9:316.
    • (2008) BMC Genomics , vol.9 , pp. 316
    • De Souza, G.A.1    Malen, H.2    Softeland, T.3    Saelensminde, G.4    Prasad, S.5    Jonassen, I.6    Wiker, H.G.7
  • 27
    • 34247513942 scopus 로고    scopus 로고
    • From the genome sequence to the proteome and back: Evaluation of E. Coli genome annotation with a 2-D gel-based proteomics approach
    • DOI 10.1002/pmic.200600599
    • Maillet I, Berndt P, Malo C, Rodriguez S, Brunisholz RA, Pragai Z, Arnold S, Langen H, Wyss M: From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Proteomics 2007, 7:1097-1106. (Pubitemid 46649158)
    • (2007) Proteomics , vol.7 , Issue.7 , pp. 1097-1106
    • Maillet, I.1    Berndt, P.2    Malo, C.3    Rodriguez, S.4    Brunisholz, R.A.5    Pragai, Z.6    Arnold, S.7    Langen, H.8    Wyss, M.9
  • 29
    • 33645054564 scopus 로고    scopus 로고
    • Posttranslational, translational, and transcriptional responses to nitric oxide stress in cryptococcus neoformans: Implications for virulence
    • Missall TA, Pusateri ME, Donlin MJ, Chambers KT, Corbett JA, Lodge JK: Posttranslational, translational, and transcriptional responses to nitric oxide stress in Cryptococcus neoformans: implications for virulence. Eukaryot Cell 2006, 5:518-529.
    • (2006) Eukaryot Cell , vol.5 , pp. 518-529
    • Missall, T.A.1    Pusateri, M.E.2    Donlin, M.J.3    Chambers, K.T.4    Corbett, J.A.5    Lodge, J.K.6
  • 32
    • 0035577382 scopus 로고    scopus 로고
    • A reassessment of the translation initiation codon in vertebrates
    • DOI 10.1016/S0168-9525(01)02493-3, PII S0168952501024933
    • Peri S, Pandey A: A reassessment of the translation initiation codon in vertebrates. Trends Genet 2001, 17:685-687. (Pubitemid 33097510)
    • (2001) Trends in Genetics , vol.17 , Issue.12 , pp. 685-687
    • Peri, S.1    Pandey, A.2
  • 34
    • 33847208190 scopus 로고    scopus 로고
    • Experimental determination of translational starts using peptide mass mapping and tandem mass spectrometry within the proteome of mycobacterium tuberculosis
    • Rison SC, Mattow J, Jungblut PR, Stoker NG: Experimental determination of translational starts using peptide mass mapping and tandem mass spectrometry within the proteome of Mycobacterium tuberculosis. Microbiology 2007, 153:521-528.
    • (2007) Microbiology , vol.153 , pp. 521-528
    • Rison, S.C.1    Mattow, J.2    Jungblut, P.R.3    Stoker, N.G.4
  • 36
    • 77951872216 scopus 로고    scopus 로고
    • Profiling of n-Acetylated protein termini provides in-depth insights into the n-Terminal nature of the proteome
    • Helbig AO, Gauci S, Raijmakers R, van Breukelen B, Slijper M, Mohammed S, Heck AJ: Profiling of N-Acetylated protein termini provides in-depth insights into the N-Terminal nature of the proteome. Mol Cell Proteomics 2010, 9:928-939.
    • (2010) Mol Cell Proteomics , vol.9 , pp. 928-939
    • Helbig, A.O.1    Gauci, S.2    Raijmakers, R.3    Van, B.B.4    Slijper, M.5    Mohammed, S.6    Heck, A.J.7
  • 38
    • 42949174108 scopus 로고    scopus 로고
    • Comparative genomic analysis of fungal genomes reveals intron-rich ancestors
    • Stajich JE, Dietrich FS, Roy SW: Comparative genomic analysis of fungal genomes reveals intron-rich ancestors. Genome Biol 2007, 8:R223.
    • (2007) Genome Biol , vol.8
    • Stajich, J.E.1    Dietrich, F.S.2    Roy, S.W.3
  • 41
    • 40649095957 scopus 로고    scopus 로고
    • Quantitative proteomics using stable isotope labeling with amino acids in cell culture
    • DOI 10.1038/nprot.2008.2, PII NPROT.2008.2
    • Harsha HC, Molina H, Pandey A: Quantitative proteomics using stable isotope labeling with amino acids in cell culture. Nat Protoc 2008, 3:505-516. (Pubitemid 351372235)
    • (2008) Nature Protocols , vol.3 , Issue.3 , pp. 505-516
    • Harsha, H.C.1    Molina, H.2    Pandey, A.3
  • 46
    • 23144444421 scopus 로고    scopus 로고
    • AUGUSTUS: A web server for gene prediction in eukaryotes that allows user-defined constraints
    • DOI 10.1093/nar/gki458
    • Stanke M, Morgenstern B: AUGUSTUS: A web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res 2005, 33:W465-W467. (Pubitemid 44529963)
    • (2005) Nucleic Acids Research , vol.33 , Issue.WEB. SERV. ISS.
    • Stanke, M.1    Morgenstern, B.2
  • 49
    • 0032519353 scopus 로고    scopus 로고
    • GeneMark.hmm: New solutions for gene finding
    • DOI 10.1093/nar/26.4.1107
    • Lukashin AV, Borodovsky M: GeneMark.hmm: new solutions for gene finding. Nucleic Acids Res 1998, 26:1107-1115. (Pubitemid 28291669)
    • (1998) Nucleic Acids Research , vol.26 , Issue.4 , pp. 1107-1115
    • Lukashin, A.V.1    Borodovsky, M.2
  • 50
    • 43349093149 scopus 로고    scopus 로고
    • Using N-SCAN or TWINSCAN to predict gene structures in genomic DNA sequences
    • Chapter 4:Unit 4 8
    • van Baren MJ, Koebbe BC, Brent MR: Using N-SCAN or TWINSCAN to predict gene structures in genomic DNA sequences. Curr Protoc Bioinformatics 2007, Chapter 4:Unit 4 8.
    • (2007) Curr Protoc Bioinformatics
    • Van Baren, M.J.1    Koebbe, B.C.2    Brent, M.R.3
  • 52
    • 0033990048 scopus 로고    scopus 로고
    • Primer3 on the WWW for general users and for biologist programmers
    • Rozen S, Skaletsky H: Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 2000, 132:365-386.
    • (2000) Methods Mol Biol , vol.132 , pp. 365-386
    • Rozen, S.1    Skaletsky, H.2
  • 53
    • 0036667450 scopus 로고    scopus 로고
    • Molecular and genetic analysis of the cryptococcus neoformans MET3 gene and a MET3 mutant
    • Yang Z, Pascon RC, Alspaugh A, Cox GM, McCusker JH: Molecular and genetic analysis of the Cryptococcus neoformans MET3 gene and a met3 mutant. Microbiology 2002, 148:2617-2625.
    • (2002) Microbiology , vol.148 , pp. 2617-2625
    • Yang, Z.1    Pascon, R.C.2    Alspaugh, A.3    Cox, G.M.4    McCusker, J.H.5


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