-
1
-
-
0035150398
-
Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases
-
DOI 10.1016/S0968-0004(00)01726-6, PII S0968000400017266
-
Mann, M.; Pandey, A. Use of mass spectrometry-derived data to annotate nucleotide and protein sequence databases Trends Biochem. Sci. 2001, 26 (1) 54-61 (Pubitemid 32124711)
-
(2001)
Trends in Biochemical Sciences
, vol.26
, Issue.1
, pp. 54-61
-
-
Mann, M.1
Pandey, A.2
-
2
-
-
0034659815
-
Proteomics to study genes and genomes
-
DOI 10.1038/35015709
-
Pandey, A.; Mann, M. Proteomics to study genes and genomes Nature 2000, 405 (6788) 837-46 (Pubitemid 30407862)
-
(2000)
Nature
, vol.405
, Issue.6788
, pp. 837-846
-
-
Pandey, A.1
Mann, M.2
-
3
-
-
77957237701
-
Proteogenomics to discover the full coding content of genomes: A computational perspective
-
Castellana, N.; Bafna, V. Proteogenomics to discover the full coding content of genomes: a computational perspective J. Proteomics 2010, 73 (11) 2124-35
-
(2010)
J. Proteomics
, vol.73
, Issue.11
, pp. 2124-35
-
-
Castellana, N.1
Bafna, V.2
-
4
-
-
78751653049
-
Mass spectrometry at the interface of proteomics and genomics
-
Krug, K.; Nahnsen, S.; Macek, B. Mass spectrometry at the interface of proteomics and genomics Mol. Biosyst. 2010, 7 (2) 284-91
-
(2010)
Mol. Biosyst.
, vol.7
, Issue.2
, pp. 284-91
-
-
Krug, K.1
Nahnsen, S.2
MacEk, B.3
-
5
-
-
79551475673
-
Proteogenomics
-
Renuse, S.; Chaerkady, R.; Pandey, A. Proteogenomics Proteomics 2011, 11 (4) 620-30
-
(2011)
Proteomics
, vol.11
, Issue.4
, pp. 620-30
-
-
Renuse, S.1
Chaerkady, R.2
Pandey, A.3
-
6
-
-
77349112887
-
Candida glabrata persistence in mice does not depend on host immunosuppression and is unaffected by fungal amino acid auxotrophy
-
Jacobsen, I. D.; Brunke, S.; Seider, K.; Schwarzmuller, T.; Firon, A.; d'Enfert, C.; Kuchler, K.; Hube, B. Candida glabrata persistence in mice does not depend on host immunosuppression and is unaffected by fungal amino acid auxotrophy Infect. Immun. 2010, 78 (3) 1066-77
-
(2010)
Infect. Immun.
, vol.78
, Issue.3
, pp. 1066-77
-
-
Jacobsen, I.D.1
Brunke, S.2
Seider, K.3
Schwarzmuller, T.4
Firon, A.5
D'Enfert, C.6
Kuchler, K.7
Hube, B.8
-
7
-
-
77950657284
-
Proteomics of drug resistance in Candida glabrata biofilms
-
Seneviratne, C. J.; Wang, Y.; Jin, L.; Abiko, Y.; Samaranayake, L. P. Proteomics of drug resistance in Candida glabrata biofilms Proteomics 2010, 10 (7) 1444-54
-
(2010)
Proteomics
, vol.10
, Issue.7
, pp. 1444-54
-
-
Seneviratne, C.J.1
Wang, Y.2
Jin, L.3
Abiko, Y.4
Samaranayake, L.P.5
-
8
-
-
0036532509
-
The epidemiology of Candida glabrata and Candida albicans fungemia in immunocompromised patients with cancer
-
DOI 10.1016/S0002-9343(01)01130-5, PII S0002934301011305
-
Bodey, G. P.; Mardani, M.; Hanna, H. A.; Boktour, M.; Abbas, J.; Girgawy, E.; Hachem, R. Y.; Kontoyiannis, D. P.; Raad, II The epidemiology of Candida glabrata and Candida albicans fungemia in immunocompromised patients with cancer Am. J. Med. 2002, 112 (5) 380-5 (Pubitemid 34248029)
-
(2002)
American Journal of Medicine
, vol.112
, Issue.5
, pp. 380-385
-
-
Bodey, G.P.1
Mardani, M.2
Hanna, H.A.3
Boktour, M.4
Abbas, J.5
Girgawy, E.6
Hachem, R.Y.7
Kontoyiannis, D.P.8
Raad, I.I.9
-
9
-
-
0026597735
-
A controlled trial of fluconazole to prevent fungal infections in patients undergoing bone marrow transplantation
-
Goodman, J. L.; Winston, D. J.; Greenfield, R. A.; Chandrasekar, P. H.; Fox, B.; Kaizer, H.; Shadduck, R. K.; Shea, T. C.; Stiff, P.; Friedman, D. J. A controlled trial of fluconazole to prevent fungal infections in patients undergoing bone marrow transplantation N. Engl. J. Med. 1992, 326 (13) 845-51
-
(1992)
N. Engl. J. Med.
, vol.326
, Issue.13
, pp. 845-51
-
-
Goodman, J.L.1
Winston, D.J.2
Greenfield, R.A.3
Chandrasekar, P.H.4
Fox, B.5
Kaizer, H.6
Shadduck, R.K.7
Shea, T.C.8
Stiff, P.9
Friedman, D.J.10
-
10
-
-
41149144087
-
Candida glabrata infection in gastric carcinoma patient mimicking cutaneous histoplasmosis
-
Gugic, D.; Cleary, T.; Vincek, V. Candida glabrata infection in gastric carcinoma patient mimicking cutaneous histoplasmosis Dermatol. Online J. 2008, 14 (2) 15
-
(2008)
Dermatol. Online J.
, vol.14
, Issue.2
, pp. 15
-
-
Gugic, D.1
Cleary, T.2
Vincek, V.3
-
11
-
-
3142726042
-
Incidence of Bloodstream Infections Due to Candida Species and In Vitro Susceptibilities of Isolates Collected from 1998 to 2000 in a Population-Based Active Surveillance Program
-
DOI 10.1128/JCM.42.4.1519-1527.2004
-
Hajjeh, R. A.; Sofair, A. N.; Harrison, L. H.; Lyon, G. M.; Arthington-Skaggs, B. A.; Mirza, S. A.; Phelan, M.; Morgan, J.; Lee-Yang, W.; Ciblak, M. A.; Benjamin, L. E.; Sanza, L. T.; Huie, S.; Yeo, S. F.; Brandt, M. E.; Warnock, D. W. Incidence of bloodstream infections due to Candida species and in vitro susceptibilities of isolates collected from 1998 to 2000 in a population-based active surveillance program J. Clin. Microbiol. 2004, 42 (4) 1519-27 (Pubitemid 38500790)
-
(2004)
Journal of Clinical Microbiology
, vol.42
, Issue.4
, pp. 1519-1527
-
-
Hajjeh, R.A.1
Sofair, A.N.2
Harrison, L.H.3
Lyon, G.M.4
Arthington-Skaggs, B.A.5
Mirza, S.A.6
Phelan, M.7
Morgan, J.8
Lee-Yang, W.9
Ciblak, M.A.10
Benjamin, L.E.11
Sanza, L.T.12
Huie, S.13
Yeo, S.F.14
Brandt, M.E.15
Warnock, D.W.16
-
12
-
-
39149111258
-
Therapy and outcome of Candida glabrata versus Candida albicans bloodstream infection
-
DOI 10.1016/j.diagmicrobio.2007.10.001, PII S0732889307004439
-
Klevay, M. J.; Ernst, E. J.; Hollanbaugh, J. L.; Miller, J. G.; Pfaller, M. A.; Diekema, D. J. Therapy and outcome of Candida glabrata versus Candida albicans bloodstream infection Diagn. Microbiol. Infect. Dis. 2008, 60 (3) 273-7 (Pubitemid 351253604)
-
(2008)
Diagnostic Microbiology and Infectious Disease
, vol.60
, Issue.3
, pp. 273-277
-
-
Klevay, M.J.1
Ernst, E.J.2
Hollanbaugh, J.L.3
Miller, J.G.4
Pfaller, M.A.5
Diekema, D.J.6
-
13
-
-
0031948743
-
Nosocomial breakthrough fungaemia during antifungal prophylaxis or empirical antifungal therapy in 41 cancer patients receiving antineoplastic chemotherapy: Analysis of aetiology risk factors and outcome
-
Krcmery, V., Jr.; Oravcova, E.; Spanik, S.; Mrazova-Studena, M.; Trupl, J.; Kunova, A.; Stopkova-Grey, K.; Kukuckova, E.; Krupova, I.; Demitrovicova, A.; Kralovicova, K. Nosocomial breakthrough fungaemia during antifungal prophylaxis or empirical antifungal therapy in 41 cancer patients receiving antineoplastic chemotherapy: analysis of aetiology risk factors and outcome J. Antimicrob. Chemother. 1998, 41 (3) 373-80
-
(1998)
J. Antimicrob. Chemother.
, vol.41
, Issue.3
, pp. 373-80
-
-
Krcmery Jr., V.1
Oravcova, E.2
Spanik, S.3
Mrazova-Studena, M.4
Trupl, J.5
Kunova, A.6
Stopkova-Grey, K.7
Kukuckova, E.8
Krupova, I.9
Demitrovicova, A.10
Kralovicova, K.11
-
14
-
-
0032953377
-
Candidemia in cancer patients: A prospective, multicenter surveillance study by the invasive fungal infection group (IFIG) of the European organization for research and treatment of cancer (EORTC)
-
Viscoli, C.; Girmenia, C.; Marinus, A.; Collette, L.; Martino, P.; Vandercam, B.; Doyen, C.; Lebeau, B.; Spence, D.; Krcmery, V.; De Pauw, B.; Meunier, F. Candidemia in cancer patients: a prospective, multicenter surveillance study by the Invasive Fungal Infection Group (IFIG) of the European Organization for Research and Treatment of Cancer (EORTC) Clin. Infect. Dis. 1999, 28 (5) 1071-9 (Pubitemid 29203541)
-
(1999)
Clinical Infectious Diseases
, vol.28
, Issue.5
, pp. 1071-1079
-
-
Girmenia, C.1
Marinus, A.2
Collette, L.3
Doyen, C.4
Meunier, F.5
Martino, P.6
Lebeau, B.7
Kremery, V.8
Spence, D.9
Vandercam, B.10
Herbrecht, R.11
Troncy, J.12
Aoun, M.13
Nemet, D.14
Viviani, M.A.15
Viscoli, C.16
Cometta, A.17
Hemmer, R.18
Cordonnier, C.19
Cohen, J.20
Thyss, A.21
Engelhard, D.22
Hennequin, C.23
De Marie, S.24
Giacchino, M.25
Ljungmen, P.26
Sehrijvers, D.27
De Pauw, B.28
Moreau, P.29
Todeschini, G.30
Offner, F.31
Tjean, M.32
Gregor, A.33
Giacchino, R.34
more..
-
15
-
-
23844438716
-
Biological consequences of petite mutations in Candida glabrata
-
DOI 10.1093/jac/dki200
-
Brun, S.; Dalle, F.; Saulnier, P.; Renier, G.; Bonnin, A.; Chabasse, D.; Bouchara, J. P. Biological consequences of petite mutations in Candida glabrata J. Antimicrob. Chemother. 2005, 56 (2) 307-14 (Pubitemid 41158518)
-
(2005)
Journal of Antimicrobial Chemotherapy
, vol.56
, Issue.2
, pp. 307-314
-
-
Brun, S.1
Dalle, F.2
Saulnier, P.3
Renier, G.4
Bonnin, A.5
Chabasse, D.6
Bouchara, J.-P.7
-
16
-
-
0036550465
-
Non-albicans Candida spp. causing fungaemia: Pathogenicity and antifungal resistance
-
DOI 10.1053/jhin.2001.1151, PII S019567010191151X
-
Krcmery, V.; Barnes, A. J. Non-albicans Candida spp. causing fungaemia: pathogenicity and antifungal resistance J. Hosp. Infect. 2002, 50 (4) 243-60 (Pubitemid 37554852)
-
(2002)
Journal of Hospital Infection
, vol.50
, Issue.4
, pp. 243-260
-
-
Krcmery, V.1
Barnes, A.J.2
-
17
-
-
33947375620
-
Candida glabrata: An emerging oral opportunistic pathogen
-
Li, L.; Redding, S.; Dongari-Bagtzoglou, A. Candida glabrata: an emerging oral opportunistic pathogen J. Dent. Res. 2007, 86 (3) 204-15
-
(2007)
J. Dent. Res.
, vol.86
, Issue.3
, pp. 204-15
-
-
Li, L.1
Redding, S.2
Dongari-Bagtzoglou, A.3
-
18
-
-
79955467634
-
Adherence and biofilm formation of non-Candida albicans Candida species
-
Silva, S.; Negri, M.; Henriques, M.; Oliveira, R.; Williams, D. W.; Azeredo, J. Adherence and biofilm formation of non-Candida albicans Candida species Trends Microbiol. 2011, 19 (5) 241-7
-
(2011)
Trends Microbiol.
, vol.19
, Issue.5
, pp. 241-7
-
-
Silva, S.1
Negri, M.2
Henriques, M.3
Oliveira, R.4
Williams, D.W.5
Azeredo, J.6
-
19
-
-
84907132446
-
Secreted phospholipases of the dimorphic fungus, Candida albicans; separation of three enzymes and some biological properties
-
Banno, Y.; Yamada, T.; Nozawa, Y. Secreted phospholipases of the dimorphic fungus, Candida albicans; separation of three enzymes and some biological properties Sabouraudia 1985, 23 (1) 47-54 (Pubitemid 15174552)
-
(1985)
Sabouraudia Journal of Medical and Veterinary Mycology
, vol.23
, Issue.1
, pp. 47-54
-
-
Banno, Y.1
Yamada, T.2
Nozawa, Y.3
-
20
-
-
0021802309
-
A comparison of phospholipase activity, cellular adherence and pathogenicity of yeasts
-
Barrett-Bee, K.; Hayes, Y.; Wilson, R. G.; Ryley, J. F. A comparison of phospholipase activity, cellular adherence and pathogenicity of yeasts J. Gen. Microbiol. 1985, 131 (5) 1217-21 (Pubitemid 15028296)
-
(1985)
Journal of General Microbiology
, vol.131
, Issue.5
, pp. 1217-1221
-
-
Barrett-Bee, K.1
Hayes, Y.2
Wilson, R.G.3
Ryley, J.F.4
-
21
-
-
0031956886
-
Candida dubliniensis: Phylogeny and putative virulence factors
-
Gilfillan, G. D.; Sullivan, D. J.; Haynes, K.; Parkinson, T.; Coleman, D. C.; Gow, N. A. Candida dubliniensis: phylogeny and putative virulence factors Microbiology 1998, 144 (Pt 4) 829-38 (Pubitemid 28187909)
-
(1998)
Microbiology
, vol.144
, Issue.4
, pp. 829-838
-
-
Gilfillan, G.D.1
Sullivan, D.J.2
Haynes, K.3
Parkinson, T.4
Coleman, D.C.5
Gow, N.A.R.6
-
22
-
-
0028955930
-
Evidence implicating phospholipase as a virulence factor of Candida albicans
-
Ibrahim, A. S.; Mirbod, F.; Filler, S. G.; Banno, Y.; Cole, G. T.; Kitajima, Y.; Edwards, J. E., Jr.; Nozawa, Y.; Ghannoum, M. A. Evidence implicating phospholipase as a virulence factor of Candida albicans Infect. Immun. 1995, 63 (5) 1993-8
-
(1995)
Infect. Immun.
, vol.63
, Issue.5
, pp. 1993-8
-
-
Ibrahim, A.S.1
Mirbod, F.2
Filler, S.G.3
Banno, Y.4
Cole, G.T.5
Kitajima, Y.6
Edwards Jr., J.E.7
Nozawa, Y.8
Ghannoum, M.A.9
-
23
-
-
0027164399
-
The genes encoding the secreted aspartyl proteinases of Candida albicans constitute a family with at least three members
-
Magee, B. B.; Hube, B.; Wright, R. J.; Sullivan, P. J.; Magee, P. T. The genes encoding the secreted aspartyl proteinases of Candida albicans constitute a family with at least three members Infect. Immun. 1993, 61 (8) 3240-3 (Pubitemid 23223411)
-
(1993)
Infection and Immunity
, vol.61
, Issue.8
, pp. 3240-3243
-
-
Magee, B.B.1
Hube, B.2
Wright, R.J.3
Sullivan, P.J.4
Magee, P.T.5
-
24
-
-
0028233073
-
Multiplicity of genes encoding secreted aspartic proteinases in Candida species
-
DOI 10.1111/j.1365-2958.1994.tb00429.x
-
Monod, M.; Togni, G.; Hube, B.; Sanglard, D. Multiplicity of genes encoding secreted aspartic proteinases in Candida species Mol. Microbiol. 1994, 13 (2) 357-68 (Pubitemid 24225506)
-
(1994)
Molecular Microbiology
, vol.13
, Issue.2
, pp. 357-368
-
-
Monod, M.1
Togni, G.2
Hube, B.3
Sanglard, D.4
-
25
-
-
0025887183
-
Secreted Candida albicans phospholipases: Purification and characterization of two forms of lysophospholipase-transacylase
-
Takahashi, M.; Banno, Y.; Nozawa, Y. Secreted Candida albicans phospholipases: purification and characterization of two forms of lysophospholipase-transacylase J. Med. Vet. Mycol. 1991, 29 (3) 193-204
-
(1991)
J. Med. Vet. Mycol.
, vol.29
, Issue.3
, pp. 193-204
-
-
Takahashi, M.1
Banno, Y.2
Nozawa, Y.3
-
26
-
-
0035172588
-
Secreted aspartic proteinase family of Candida tropicalis
-
DOI 10.1128/IAI.69.1.405-412.2001
-
Zaugg, C.; Borg-Von Zepelin, M.; Reichard, U.; Sanglard, D.; Monod, M. Secreted aspartic proteinase family of Candida tropicalis Infect. Immun. 2001, 69 (1) 405-12 (Pubitemid 32038339)
-
(2001)
Infection and Immunity
, vol.69
, Issue.1
, pp. 405-412
-
-
Zaugg, C.1
Borg-Von Zepelin, M.2
Reichard, U.3
Sanglard, D.4
Monod, M.5
-
27
-
-
78649700130
-
Comparative Proteomic Analysis of Candida albicans and Candida glabrata
-
Prasad, T. S. K.; Keerthikumar, S.; Chaerkady, R.; Kandasamy, K.; Renuse, S.; Marimuthu, A.; Venugopal, A.; Thomas, J.; Jacob, H.; Goel, R.; Pawar, H.; Sahasrabuddhe, N.; Krishna, V.; Nair, B.; Gucek, M.; Cole, R.; Ravikumar, R.; Harsha, H.; Pandey, A. Comparative Proteomic Analysis of Candida albicans and Candida glabrata Clin. Proteomics 2010, 6 (4) 163-73
-
(2010)
Clin. Proteomics
, vol.6
, Issue.4
, pp. 163-73
-
-
Prasad, T.S.K.1
Keerthikumar, S.2
Chaerkady, R.3
Kandasamy, K.4
Renuse, S.5
Marimuthu, A.6
Venugopal, A.7
Thomas, J.8
Jacob, H.9
Goel, R.10
Pawar, H.11
Sahasrabuddhe, N.12
Krishna, V.13
Nair, B.14
Gucek, M.15
Cole, R.16
Ravikumar, R.17
Harsha, H.18
Pandey, A.19
-
28
-
-
39149097232
-
Proteomic analysis of the pH response in the fungal pathogen Candida glabrata
-
DOI 10.1002/pmic.200700845
-
Schmidt, P.; Walker, J.; Selway, L.; Stead, D.; Yin, Z.; Enjalbert, B.; Weig, M.; Brown, A. J. Proteomic analysis of the pH response in the fungal pathogen Candida glabrata Proteomics 2008, 8 (3) 534-44 (Pubitemid 351252011)
-
(2008)
Proteomics
, vol.8
, Issue.3
, pp. 534-544
-
-
Schmidt, P.1
Walker, J.2
Selway, L.3
Stead, D.4
Yin, Z.5
Enjalbert, B.6
Weig, M.7
Brown, A.J.P.8
-
29
-
-
3042720475
-
Genome evolution in yeasts
-
DOI 10.1038/nature02579
-
Dujon, B.; Sherman, D.; Fischer, G.; Durrens, P.; Casaregola, S.; Lafontaine, I.; De Montigny, J.; Marck, C.; Neuveglise, C.; Talla, E.; Goffard, N.; Frangeul, L.; Aigle, M.; Anthouard, V.; Babour, A.; Barbe, V.; Barnay, S.; Blanchin, S.; Beckerich, J. M.; Beyne, E.; Bleykasten, C.; Boisrame, A.; Boyer, J.; Cattolico, L.; Confanioleri, F.; De Daruvar, A.; Despons, L.; Fabre, E.; Fairhead, C.; Ferry-Dumazet, H.; Groppi, A.; Hantraye, F.; Hennequin, C.; Jauniaux, N.; Joyet, P.; Kachouri, R.; Kerrest, A.; Koszul, R.; Lemaire, M.; Lesur, I.; Ma, L.; Muller, H.; Nicaud, J. M.; Nikolski, M.; Oztas, S.; Ozier-Kalogeropoulos, O.; Pellenz, S.; Potier, S.; Richard, G. F.; Straub, M. L.; Suleau, A.; Swennen, D.; Tekaia, F.; Wesolowski-Louvel, M.; Westhof, E.; Wirth, B.; Zeniou-Meyer, M.; Zivanovic, I.; Bolotin-Fukuhara, M.; Thierry, A.; Bouchier, C.; Caudron, B.; Scarpelli, C.; Gaillardin, C.; Weissenbach, J.; Wincker, P.; Souciet, J. L. Genome evolution in yeasts Nature 2004, 430 (6995) 35-44 (Pubitemid 38915217)
-
(2004)
Nature
, vol.430
, Issue.6995
, pp. 35-44
-
-
Dujon, B.1
Sherman, D.2
Fischer, G.3
Durrens, P.4
Casaregela, S.5
Lafentaine, I.6
De Montigny, J.7
Marck, C.8
Neuveglise, C.9
Talla, E.10
Goffard, N.11
Frangeul, L.12
Algie, M.13
Anthouard, V.14
Babour, A.15
Barbe, V.16
Barnay, S.17
Blanchin, S.18
Beckerich, J.-M.19
Beyne, E.20
Bleykasten, C.21
Boisrame, A.22
Boyer, J.23
Cattolico, L.24
Confanioleri, F.25
De Daruvar, A.26
Despons, L.27
Fabre, E.28
Fairhead, C.29
Ferry-Dumazet, H.30
Groppi, A.31
Hantraye, F.32
Hennequin, C.33
Jauniaux, N.34
Joyot, P.35
Kachouri, R.36
Kerrest, A.37
Koszul, R.38
Lemaire, M.39
Lesur, I.40
Ma, L.41
Muller, H.42
Nicaud, J.-M.43
Nikolski, M.44
Oztas, S.45
Ozier-Kalogeropoulos, O.46
Pellenz, S.47
Potter, S.48
Richard, G.-F.49
Straub, M.-L.50
Suleau, A.51
Swennen, D.52
Tekai, F.53
Wesolowski-Louvel, M.54
Westhof, E.55
Wirth, B.56
Zeniou-Meyer, M.57
Zivanovic, I.58
Bolotin-Fukuhara, M.59
Thierry, A.60
Bouchter, C.61
Caudron, B.62
Scarpelli, C.63
Gaillardin, C.64
Weissebach, J.65
Wincker, P.66
Souciet, J.-L.67
more..
-
30
-
-
71849104860
-
Protein measurement with the Folin phenol reagent
-
Lowry, O. H.; Rosebrough, N. J.; Farr, A. L.; Randall, R. J. Protein measurement with the Folin phenol reagent J. Biol. Chem. 1951, 193 (1) 265-75
-
(1951)
J. Biol. Chem.
, vol.193
, Issue.1
, pp. 265-75
-
-
Lowry, O.H.1
Rosebrough, N.J.2
Farr, A.L.3
Randall, R.J.4
-
31
-
-
40649095957
-
Quantitative proteomics using stable isotope labeling with amino acids in cell culture
-
DOI 10.1038/nprot.2008.2, PII NPROT.2008.2
-
Harsha, H. C.; Molina, H.; Pandey, A. Quantitative proteomics using stable isotope labeling with amino acids in cell culture Nat. Protoc. 2008, 3 (3) 505-16 (Pubitemid 351372235)
-
(2008)
Nature Protocols
, vol.3
, Issue.3
, pp. 505-516
-
-
Harsha, H.C.1
Molina, H.2
Pandey, A.3
-
32
-
-
55949092635
-
A quantitative proteomic approach for identification of potential biomarkers in hepatocellular carcinoma
-
Chaerkady, R.; Harsha, H. C.; Nalli, A.; Gucek, M.; Vivekanandan, P.; Akhtar, J.; Cole, R. N.; Simmers, J.; Schulick, R. D.; Singh, S.; Torbenson, M.; Pandey, A.; Thuluvath, P. J. A quantitative proteomic approach for identification of potential biomarkers in hepatocellular carcinoma J. Proteome Res. 2008, 7 (10) 4289-98
-
(2008)
J. Proteome Res.
, vol.7
, Issue.10
, pp. 4289-98
-
-
Chaerkady, R.1
Harsha, H.C.2
Nalli, A.3
Gucek, M.4
Vivekanandan, P.5
Akhtar, J.6
Cole, R.N.7
Simmers, J.8
Schulick, R.D.9
Singh, S.10
Torbenson, M.11
Pandey, A.12
Thuluvath, P.J.13
-
33
-
-
77950669475
-
Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics
-
Fang, Y.; Robinson, D. P.; Foster, L. J. Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics J. Proteome Res. 2010, 9 (4) 1902-12
-
(2010)
J. Proteome Res.
, vol.9
, Issue.4
, pp. 1902-12
-
-
Fang, Y.1
Robinson, D.P.2
Foster, L.J.3
-
34
-
-
34548183872
-
Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips
-
DOI 10.1038/nprot.2007.261, PII NPROT.2007.261
-
Rappsilber, J.; Mann, M.; Ishihama, Y. Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips Nat. Protoc. 2007, 2 (8) 1896-906 (Pubitemid 47308128)
-
(2007)
Nature Protocols
, vol.2
, Issue.8
, pp. 1896-1906
-
-
Rappsilber, J.1
Mann, M.2
Ishihama, Y.3
-
35
-
-
0032519353
-
GeneMark.hmm: New solutions for gene finding
-
DOI 10.1093/nar/26.4.1107
-
Lukashin, A. V.; Borodovsky, M. GeneMark.hmm: new solutions for gene finding Nucleic Acids Res. 1998, 26 (4) 1107-15 (Pubitemid 28291669)
-
(1998)
Nucleic Acids Research
, vol.26
, Issue.4
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
36
-
-
40049091292
-
Using native and syntenically mapped cDNA alignments to improve de novo gene finding
-
DOI 10.1093/bioinformatics/btn013
-
Stanke, M.; Diekhans, M.; Baertsch, R.; Haussler, D. Using native and syntenically mapped cDNA alignments to improve de novo gene finding Bioinformatics 2008, 24 (5) 637-44 (Pubitemid 351321206)
-
(2008)
Bioinformatics
, vol.24
, Issue.5
, pp. 637-644
-
-
Stanke, M.1
Diekhans, M.2
Baertsch, R.3
Haussler, D.4
-
37
-
-
69649109364
-
Circos: An information aesthetic for comparative genomics
-
Krzywinski, M.; Schein, J.; Birol, I.; Connors, J.; Gascoyne, R.; Horsman, D.; Jones, S. J.; Marra, M. A. Circos: an information aesthetic for comparative genomics Genome Res. 2009, 19 (9) 1639-45
-
(2009)
Genome Res.
, vol.19
, Issue.9
, pp. 1639-45
-
-
Krzywinski, M.1
Schein, J.2
Birol, I.3
Connors, J.4
Gascoyne, R.5
Horsman, D.6
Jones, S.J.7
Marra, M.A.8
-
38
-
-
1842768392
-
Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing
-
DOI 10.1101/gr.1959604
-
Wu, J. Q.; Shteynberg, D.; Arumugam, M.; Gibbs, R. A.; Brent, M. R. Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing Genome Res. 2004, 14 (4) 665-71 (Pubitemid 38500238)
-
(2004)
Genome Research
, vol.14
, Issue.4
, pp. 665-671
-
-
Wu, J.Q.1
Shteynberg, D.2
Arumugam, M.3
Gibbs, R.A.4
Bren, M.R.5
-
39
-
-
13444267288
-
A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome
-
DOI 10.1073/pnas.0409421102
-
Yandell, M.; Bailey, A. M.; Misra, S.; Shu, S.; Wiel, C.; Evans-Holm, M.; Celniker, S. E.; Rubin, G. M. A computational and experimental approach to validating annotations and gene predictions in the Drosophila melanogaster genome Proc. Natl. Acad. Sci. U.S.A. 2005, 102 (5) 1566-71 (Pubitemid 40209208)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.5
, pp. 1566-1571
-
-
Yandell, M.1
Bailey, A.M.2
Misra, S.3
Shu, S.4
Wiel, C.5
Evans-Holm, M.6
Celniker, S.E.7
Rubin, G.M.8
-
40
-
-
58149182731
-
Genolevures: Protein families and synteny among complete hemiascomycetous yeast proteomes and genomes
-
Database Issue
-
Sherman, D. J.; Martin, T.; Nikolski, M.; Cayla, C.; Souciet, J. L.; Durrens, P. Genolevures: protein families and synteny among complete hemiascomycetous yeast proteomes and genomes Nucleic Acids Res. 2009, 37 (Database issue) D550-4
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 550-4
-
-
Sherman, D.J.1
Martin, T.2
Nikolski, M.3
Cayla, C.4
Souciet, J.L.5
Durrens, P.6
-
41
-
-
10544244161
-
Linking genome and proteome by mass spectrometry: Large-scale identification of yeast proteins from two dimensional gels
-
DOI 10.1073/pnas.93.25.14440
-
Shevchenko, A.; Jensen, O. N.; Podtelejnikov, A. V.; Sagliocco, F.; Wilm, M.; Vorm, O.; Mortensen, P.; Boucherie, H.; Mann, M. Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels Proc. Natl. Acad. Sci. U.S.A. 1996, 93 (25) 14440-5 (Pubitemid 26418985)
-
(1996)
Proceedings of the National Academy of Sciences of the United States of America
, vol.93
, Issue.25
, pp. 14440-14445
-
-
Shevchenko, A.1
Jensen, O.N.2
Podtelejnikov, A.V.3
Sagliocco, F.4
Wilm, M.5
Vorm, O.6
Mortensen, P.7
Shevchenko, A.8
Boucherie, H.9
Mann, M.10
-
42
-
-
84855549488
-
Systems-wide perturbation analysis with near complete coverage of the yeast proteome by single-shot UHPLC runs on a bench-top Orbitrap
-
10.1074/mcp.M111.013722
-
Nagaraj, N.; Kulak, N. A.; Cox, J.; Neuhaus, N.; Mayr, K.; Hoerning, O.; Vorm, O.; Mann, M. Systems-wide perturbation analysis with near complete coverage of the yeast proteome by single-shot UHPLC runs on a bench-top Orbitrap Mol. Cell. Proteomics 2011, 10.1074/mcp.M111.013722
-
(2011)
Mol. Cell. Proteomics
-
-
Nagaraj, N.1
Kulak, N.A.2
Cox, J.3
Neuhaus, N.4
Mayr, K.5
Hoerning, O.6
Vorm, O.7
Mann, M.8
-
43
-
-
80555142954
-
A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry
-
Chaerkady, R.; Kelkar, D. S.; Muthusamy, B.; Kandasamy, K.; Dwivedi, S. B.; Sahasrabuddhe, N. A.; Kim, M. S.; Renuse, S.; Pinto, S. M.; Sharma, R.; Pawar, H.; Sekhar, N. R.; Mohanty, A. K.; Getnet, D.; Yang, Y.; Zhong, J.; Dash, A. P.; Maccallum, R. M.; Delanghe, B.; Mlambo, G.; Kumar, A.; Prasad, K. T.; Okulate, M.; Kumar, N.; Pandey, A. A proteogenomic analysis of Anopheles gambiae using high-resolution Fourier transform mass spectrometry Genome Res. 2011, 21, 1872-81
-
(2011)
Genome Res.
, vol.21
, pp. 1872-81
-
-
Chaerkady, R.1
Kelkar, D.S.2
Muthusamy, B.3
Kandasamy, K.4
Dwivedi, S.B.5
Sahasrabuddhe, N.A.6
Kim, M.S.7
Renuse, S.8
Pinto, S.M.9
Sharma, R.10
Pawar, H.11
Sekhar, N.R.12
Mohanty, A.K.13
Getnet, D.14
Yang, Y.15
Zhong, J.16
Dash, A.P.17
MacCallum, R.M.18
Delanghe, B.19
Mlambo, G.20
Kumar, A.21
Prasad, K.T.22
Okulate, M.23
Kumar, N.24
Pandey, A.25
more..
-
44
-
-
83055173265
-
Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry
-
10.1074/mcp.M111.011445
-
Kelkar, D. S.; Kumar, D.; Kumar, P.; Balakrishnan, L.; Muthusamy, B.; Yadav, A. K.; Shrivastava, P.; Marimuthu, A.; Anand, S.; Sundaram, H.; Kingsbury, R.; Harsha, H. C.; Nair, B.; Prasad, T. S. K.; Chauhan, D. S.; Katoch, K.; Katoch, V. M.; Kumar, P.; Chaerkady, R.; Ramachandran, S.; Dash, D.; Pandey, A. Proteogenomic analysis of Mycobacterium tuberculosis by high resolution mass spectrometry Mol. Cell. Proteomics 2011, 10.1074/mcp.M111.011445
-
(2011)
Mol. Cell. Proteomics
-
-
Kelkar, D.S.1
Kumar, D.2
Kumar, P.3
Balakrishnan, L.4
Muthusamy, B.5
Yadav, A.K.6
Shrivastava, P.7
Marimuthu, A.8
Anand, S.9
Sundaram, H.10
Kingsbury, R.11
Harsha, H.C.12
Nair, B.13
Prasad, T.S.K.14
Chauhan, D.S.15
Katoch, K.16
Katoch, V.M.17
Kumar, P.18
Chaerkady, R.19
Ramachandran, S.20
Dash, D.21
Pandey, A.22
more..
-
45
-
-
21044442222
-
Proteomic changes associated with inactivation of the Candida glabrata ACE2 virulence-moderating gene
-
DOI 10.1002/pmic.200401064
-
Stead, D.; Findon, H.; Yin, Z.; Walker, J.; Selway, L.; Cash, P.; Dujon, B. A.; Hennequin, C.; Brown, A. J.; Haynes, K. Proteomic changes associated with inactivation of the Candida glabrata ACE2 virulence-moderating gene Proteomics 2005, 5 (7) 1838-48 (Pubitemid 40686229)
-
(2005)
Proteomics
, vol.5
, Issue.7
, pp. 1838-1848
-
-
Stead, D.1
Findon, H.2
Yin, Z.3
Walker, J.4
Selway, L.5
Cash, P.6
Dujon, B.A.7
Hennequin, C.8
Brown, A.J.P.9
Haynes, K.10
-
46
-
-
76749168142
-
Impact of the transcriptional regulator, Ace2, on the Candida glabrata secretome
-
Stead, D. A.; Walker, J.; Holcombe, L.; Gibbs, S. R.; Yin, Z.; Selway, L.; Butler, G.; Brown, A. J.; Haynes, K. Impact of the transcriptional regulator, Ace2, on the Candida glabrata secretome Proteomics 2010, 10 (2) 212-23
-
(2010)
Proteomics
, vol.10
, Issue.2
, pp. 212-23
-
-
Stead, D.A.1
Walker, J.2
Holcombe, L.3
Gibbs, S.R.4
Yin, Z.5
Selway, L.6
Butler, G.7
Brown, A.J.8
Haynes, K.9
-
47
-
-
33748061642
-
Proteomic analysis of experimentally induced azole resistance in Candida glabrata
-
DOI 10.1093/jac/dkl221
-
Rogers, P. D.; Vermitsky, J. P.; Edlind, T. D.; Hilliard, G. M. Proteomic analysis of experimentally induced azole resistance in Candida glabrata J. Antimicrob. Chemother. 2006, 58 (2) 434-8 (Pubitemid 44294961)
-
(2006)
Journal of Antimicrobial Chemotherapy
, vol.58
, Issue.2
, pp. 434-438
-
-
Rogers, P.D.1
Vermitsky, J.-P.2
Edlind, T.D.3
Hilliard, G.M.4
-
48
-
-
0035577382
-
A reassessment of the translation initiation codon in vertebrates
-
DOI 10.1016/S0168-9525(01)02493-3, PII S0168952501024933
-
Peri, S.; Pandey, A. A reassessment of the translation initiation codon in vertebrates Trends Genet. 2001, 17 (12) 685-7 (Pubitemid 33097510)
-
(2001)
Trends in Genetics
, vol.17
, Issue.12
, pp. 685-687
-
-
Peri, S.1
Pandey, A.2
-
49
-
-
72949111831
-
Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster
-
Goetze, S.; Qeli, E.; Mosimann, C.; Staes, A.; Gerrits, B.; Roschitzki, B.; Mohanty, S.; Niederer, E. M.; Laczko, E.; Timmerman, E.; Lange, V.; Hafen, E.; Aebersold, R.; Vandekerckhove, J.; Basler, K.; Ahrens, C. H.; Gevaert, K.; Brunner, E. Identification and functional characterization of N-terminally acetylated proteins in Drosophila melanogaster PLoS Biol. 2009, 7 (11) e1000236
-
(2009)
PLoS Biol.
, vol.7
, Issue.11
, pp. 1000236
-
-
Goetze, S.1
Qeli, E.2
Mosimann, C.3
Staes, A.4
Gerrits, B.5
Roschitzki, B.6
Mohanty, S.7
Niederer, E.M.8
Laczko, E.9
Timmerman, E.10
Lange, V.11
Hafen, E.12
Aebersold, R.13
Vandekerckhove, J.14
Basler, K.15
Ahrens, C.H.16
Gevaert, K.17
Brunner, E.18
-
50
-
-
0037462954
-
N-terminal acetyltransferases and sequence requirements for N-terminal acetylation of eukaryotic proteins
-
DOI 10.1016/S0022-2836(02)01269-X
-
Polevoda, B.; Sherman, F. N-terminal acetyltransferases and sequence requirements for N-terminal acetylation of eukaryotic proteins J. Mol. Biol. 2003, 325 (4) 595-622 (Pubitemid 36268685)
-
(2003)
Journal of Molecular Biology
, vol.325
, Issue.4
, pp. 595-622
-
-
Polevoda, B.1
Sherman, F.2
-
51
-
-
25444475024
-
Genome annotation of Anopheles gambiae using mass spectrometry-derived data
-
Kalume, D. E.; Peri, S.; Reddy, R.; Zhong, J.; Okulate, M.; Kumar, N.; Pandey, A. Genome annotation of Anopheles gambiae using mass spectrometry-derived data BMC Genomics 2005, 6, 128
-
(2005)
BMC Genomics
, vol.6
, pp. 128
-
-
Kalume, D.E.1
Peri, S.2
Reddy, R.3
Zhong, J.4
Okulate, M.5
Kumar, N.6
Pandey, A.7
-
52
-
-
20844433553
-
A proteomic analysis of human hemodialysis fluid
-
DOI 10.1074/mcp.M500042-MCP200
-
Molina, H.; Bunkenborg, J.; Reddy, G. H.; Muthusamy, B.; Scheel, P. J.; Pandey, A. A proteomic analysis of human hemodialysis fluid Mol. Cell. Proteomics 2005, 4 (5) 637-50 (Pubitemid 40862242)
-
(2005)
Molecular and Cellular Proteomics
, vol.4
, Issue.5
, pp. 637-650
-
-
Molina, H.1
Bunkenborg, J.2
Reddy, G.H.3
Muthusamy, B.4
Scheel, P.J.5
Pandey, A.6
|