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Volumn 11, Issue 10, 2011, Pages 2019-2026

Reversed-phase chromatography with multiple fraction concatenation strategy for proteome profiling of human MCF10A cells

Author keywords

2 D chromatography; Concatenation; Fractionation; High pH RP; Low pH RP; Technology

Indexed keywords

PROTEOME; TRYPSIN;

EID: 79955752894     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.201000722     Document Type: Article
Times cited : (473)

References (35)
  • 1
    • 76149146038 scopus 로고    scopus 로고
    • Comparison of extensive protein fractionation and repetitive LC-MS/MS analyses on depth of analysis for complex proteomes
    • Wang, H., Chang-Wong, T., Tang, H.-Y., Speicher, D. W., Comparison of extensive protein fractionation and repetitive LC-MS/MS analyses on depth of analysis for complex proteomes. J. Proteome Res. 2009, 9, 1032-1040.
    • (2009) J. Proteome Res. , vol.9 , pp. 1032-1040
    • Wang, H.1    Chang-Wong, T.2    Tang, H.-Y.3    Speicher, D.W.4
  • 2
    • 77950669475 scopus 로고    scopus 로고
    • Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics
    • Fang, Y., Robinson, D. P., Foster, L. J., Quantitative analysis of proteome coverage and recovery rates for upstream fractionation methods in proteomics. J. Proteome Res. 2010, 9, 1902-1912.
    • (2010) J. Proteome Res. , vol.9 , pp. 1902-1912
    • Fang, Y.1    Robinson, D.P.2    Foster, L.J.3
  • 4
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn, M. P., Wolters, D., Yates, J. R., Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotech. 2001, 19, 242-247.
    • (2001) Nat. Biotech. , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates, J.R.3
  • 5
    • 26444539668 scopus 로고    scopus 로고
    • Orthogonality of separation in two-dimensional liquid chromatography
    • Gilar, M., Olivova, P., Daly, A. E., Gebler, J. C., Orthogonality of separation in two-dimensional liquid chromatography. Anal. Chem. 2005, 77, 6426-6434.
    • (2005) Anal. Chem. , vol.77 , pp. 6426-6434
    • Gilar, M.1    Olivova, P.2    Daly, A.E.3    Gebler, J.C.4
  • 7
    • 0037277179 scopus 로고    scopus 로고
    • Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LCMS/MS) for large-scale protein analysis: the yeast proteome
    • Peng, J., Elias, J. E., Thoreen, C. C., Licklider, L. J., Gygi, S. P., Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LCMS/MS) for large-scale protein analysis: the yeast proteome. J. Proteome Res. 2002, 2, 43-50.
    • (2002) J. Proteome Res. , vol.2 , pp. 43-50
    • Peng, J.1    Elias, J.E.2    Thoreen, C.C.3    Licklider, L.J.4    Gygi, S.P.5
  • 8
    • 33645774852 scopus 로고    scopus 로고
    • Modular stop and go extraction tips with stacked disks for parallel and multidimensional peptide fractionation in proteomics
    • Ishihama, Y., Rappsilber, J., Mann, M., Modular stop and go extraction tips with stacked disks for parallel and multidimensional peptide fractionation in proteomics. J. Proteome Res. 2006, 5, 988-994.
    • (2006) J. Proteome Res. , vol.5 , pp. 988-994
    • Ishihama, Y.1    Rappsilber, J.2    Mann, M.3
  • 9
    • 61349198837 scopus 로고    scopus 로고
    • Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry
    • Slebos, R. J. C., Brock, J. W. C., Winters, N. F., Stuart, S. R. et al., Evaluation of strong cation exchange versus isoelectric focusing of peptides for multidimensional liquid chromatography-tandem mass spectrometry. J. Proteome Res. 2008, 7, 5286-5294.
    • (2008) J. Proteome Res. , vol.7 , pp. 5286-5294
    • Slebos, R.J.C.1    Brock, J.W.C.2    Winters, N.F.3    Stuart, S.R.4
  • 10
    • 70949086044 scopus 로고    scopus 로고
    • Comparative analysis of offgel, strong cation exchange with pH gradient, and RP at high pH for first-dimensional separation of peptides from a membrane-enriched protein fraction
    • Manadas, B., English, J. A., Wynne, K. J., Cotter, D. R., Dunn, M. J., Comparative analysis of offgel, strong cation exchange with pH gradient, and RP at high pH for first-dimensional separation of peptides from a membrane-enriched protein fraction. Proteomics 2009, 9, 5194-5198.
    • (2009) Proteomics , vol.9 , pp. 5194-5198
    • Manadas, B.1    English, J.A.2    Wynne, K.J.3    Cotter, D.R.4    Dunn, M.J.5
  • 11
    • 33748320788 scopus 로고    scopus 로고
    • Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis
    • Malmström, J., Lee, H., Nesvizhskii, A. I., Shteynberg, D. et al., Optimized peptide separation and identification for mass spectrometry based proteomics via free-flow electrophoresis. J. Proteome Res. 2006, 5, 2241-2249.
    • (2006) J. Proteome Res. , vol.5 , pp. 2241-2249
    • Malmström, J.1    Lee, H.2    Nesvizhskii, A.I.3    Shteynberg, D.4
  • 12
    • 42449147408 scopus 로고    scopus 로고
    • Hydrophilic interaction liquid chromatography (HILIC) in proteomics
    • Boersema, P., Mohammed, S., Heck, A., Hydrophilic interaction liquid chromatography (HILIC) in proteomics. Anal. Bioanal. Chem. 2008, 391, 151-159.
    • (2008) Anal. Bioanal. Chem. , vol.391 , pp. 151-159
    • Boersema, P.1    Mohammed, S.2    Heck, A.3
  • 13
    • 77954368187 scopus 로고    scopus 로고
    • Novel application of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) in shotgun proteomics: comprehensive profiling of rat kidney proteome
    • Hao, P., Guo, T., Li, X., Adav, S. S. et al., Novel application of electrostatic repulsion-hydrophilic interaction chromatography (ERLIC) in shotgun proteomics: comprehensive profiling of rat kidney proteome. J. Proteome Res. 2010, 9, 3520-3526.
    • (2010) J. Proteome Res. , vol.9 , pp. 3520-3526
    • Hao, P.1    Guo, T.2    Li, X.3    Adav, S.S.4
  • 14
    • 30344451098 scopus 로고    scopus 로고
    • Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions
    • Gilar, M., Olivova, P., Daly, A. E., Gebler, J. C., Two-dimensional separation of peptides using RP-RP-HPLC system with different pH in first and second separation dimensions. J. Sep. Sci. 2005, 28, 1694-1703.
    • (2005) J. Sep. Sci. , vol.28 , pp. 1694-1703
    • Gilar, M.1    Olivova, P.2    Daly, A.E.3    Gebler, J.C.4
  • 15
    • 36348936820 scopus 로고    scopus 로고
    • Two-dimensional reversed-phase×ion-pair reversed-phase HPLC: an alternative approach to high-resolution peptide separation for shotgun proteome analysis
    • Delmotte, N., Lasaosa, M., Tholey, A., Heinzle, E., Huber, C. G., Two-dimensional reversed-phase×ion-pair reversed-phase HPLC: an alternative approach to high-resolution peptide separation for shotgun proteome analysis. J. Proteome Res. 2007, 6, 4363-4373.
    • (2007) J. Proteome Res. , vol.6 , pp. 4363-4373
    • Delmotte, N.1    Lasaosa, M.2    Tholey, A.3    Heinzle, E.4    Huber, C.G.5
  • 16
    • 65949098656 scopus 로고    scopus 로고
    • Comparison of 1-D and 2-D LC MS/MS methods for proteomic analysis of human serum
    • Gilar, M., Olivova, P., Chakraborty, A. B., Jaworski, A. et al., Comparison of 1-D and 2-D LC MS/MS methods for proteomic analysis of human serum. Electrophoresis 2009, 30, 1157-1167.
    • (2009) Electrophoresis , vol.30 , pp. 1157-1167
    • Gilar, M.1    Olivova, P.2    Chakraborty, A.B.3    Jaworski, A.4
  • 17
    • 20444454237 scopus 로고    scopus 로고
    • Separation, detection, and identification of peptides by ion-pair reversed-phase high-performance liquid chromatography-electrospray ionization mass spectrometry at high and low pH
    • Toll, H., Oberacher, H., Swart, R., Huber, C. G., Separation, detection, and identification of peptides by ion-pair reversed-phase high-performance liquid chromatography-electrospray ionization mass spectrometry at high and low pH. J. Chromatogr. A 2005, 1079, 274-286.
    • (2005) J. Chromatogr. A , vol.1079 , pp. 274-286
    • Toll, H.1    Oberacher, H.2    Swart, R.3    Huber, C.G.4
  • 18
    • 44449172641 scopus 로고    scopus 로고
    • Evaluation of comprehensive multidimensional separations using reversed-phase, reversed-phase liquid chromatography/mass spectrometry for shotgun proteomics
    • Nakamura, T., Kuromitsu, J., Oda, Y., Evaluation of comprehensive multidimensional separations using reversed-phase, reversed-phase liquid chromatography/mass spectrometry for shotgun proteomics. J. Proteome Res. 2008, 7, 1007-1011.
    • (2008) J. Proteome Res. , vol.7 , pp. 1007-1011
    • Nakamura, T.1    Kuromitsu, J.2    Oda, Y.3
  • 20
    • 79952051199 scopus 로고    scopus 로고
    • Evaluation of different two-dimensional chromatographic techniques for proteomic analysis of mouse cardiac tissue
    • n/a-n/a.
    • Callipo, L., Capriotti, A. L., Cavaliere, C., Gubbiotti, R. et al., Evaluation of different two-dimensional chromatographic techniques for proteomic analysis of mouse cardiac tissue. Biomed. Chromatogr. 2010, n/a-n/a.
    • (2010) Biomed. Chromatogr.
    • Callipo, L.1    Capriotti, A.L.2    Cavaliere, C.3    Gubbiotti, R.4
  • 21
    • 51949083217 scopus 로고    scopus 로고
    • Practical implementation of 2D HPLC scheme with accurate peptide retention prediction in both dimensions for high-throughput bottom-up proteomics
    • Dwivedi, R. C., Spicer, V., Harder, M., Antonovici, M. et al., Practical implementation of 2D HPLC scheme with accurate peptide retention prediction in both dimensions for high-throughput bottom-up proteomics. Anal. Chem. 2008, 80, 7036-7042.
    • (2008) Anal. Chem. , vol.80 , pp. 7036-7042
    • Dwivedi, R.C.1    Spicer, V.2    Harder, M.3    Antonovici, M.4
  • 22
    • 75749099733 scopus 로고    scopus 로고
    • Reversed-phase-reversed-phase liquid chromatography approach with high orthogonality for multidimensional separation of phosphopeptides
    • Song, C., Ye, M., Han, G., Jiang, X. et al., Reversed-phase-reversed-phase liquid chromatography approach with high orthogonality for multidimensional separation of phosphopeptides. Anal. Chem. 2009, 82, 53-56.
    • (2009) Anal. Chem. , vol.82 , pp. 53-56
    • Song, C.1    Ye, M.2    Han, G.3    Jiang, X.4
  • 23
    • 33751248265 scopus 로고    scopus 로고
    • Chemically etched open tubular and monolithic emitters for nanoelectrospray ionization mass spectrometry
    • Kelly, R. T., Page, J. S., Luo, Q., Moore, R. J. et al., Chemically etched open tubular and monolithic emitters for nanoelectrospray ionization mass spectrometry. Anal. Chem. 2006, 78, 7796-7801.
    • (2006) Anal. Chem. , vol.78 , pp. 7796-7801
    • Kelly, R.T.1    Page, J.S.2    Luo, Q.3    Moore, R.J.4
  • 24
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J. K., McCormack, A. L., Yates Iii, J. R., An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 1994, 5, 976-989.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates Iii, J.R.3
  • 25
    • 29144459934 scopus 로고    scopus 로고
    • Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry
    • Liu, T., Qian, W.-J., Gritsenko, M. A., Camp, D. G. et al., Human plasma N-glycoproteome analysis by immunoaffinity subtraction, hydrazide chemistry, and mass spectrometry. J. Proteome Res. 2005, 4, 2070-2080.
    • (2005) J. Proteome Res. , vol.4 , pp. 2070-2080
    • Liu, T.1    Qian, W.-J.2    Gritsenko, M.A.3    Camp, D.G.4
  • 26
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii, A. I., Keller, A., Kolker, E., Aebersold, R., A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem. 2003, 75, 4646-4658.
    • (2003) Anal. Chem. , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1    Keller, A.2    Kolker, E.3    Aebersold, R.4
  • 27
    • 73249116888 scopus 로고    scopus 로고
    • Software tool for researching annotations of proteins: open-source protein annotation software with data visualization
    • Bhatia, V. N., Perlman, D. H., Costello, C. E., McComb, M. E., Software tool for researching annotations of proteins: open-source protein annotation software with data visualization. Anal. Chem. 2009, 81, 9819-9823.
    • (2009) Anal. Chem. , vol.81 , pp. 9819-9823
    • Bhatia, V.N.1    Perlman, D.H.2    Costello, C.E.3    McComb, M.E.4
  • 28
    • 51549102028 scopus 로고    scopus 로고
    • Comparison of two-dimensional fractionation techniques for shotgun proteomics
    • Dowell, J. A., Frost, D. C., Zhang, J., Li, L., Comparison of two-dimensional fractionation techniques for shotgun proteomics. Anal. Chem. 2008, 80, 6715-6723.
    • (2008) Anal. Chem. , vol.80 , pp. 6715-6723
    • Dowell, J.A.1    Frost, D.C.2    Zhang, J.3    Li, L.4
  • 29
    • 20144388856 scopus 로고    scopus 로고
    • Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome
    • Liu, T., Qian, W.-J., Chen, W.-N. U., Jacobs, J. M. et al., Improved proteome coverage by using high efficiency cysteinyl peptide enrichment: the human mammary epithelial cell proteome. Proteomics 2005, 5, 1263-1273.
    • (2005) Proteomics , vol.5 , pp. 1263-1273
    • Liu, T.1    Qian, W.-J.2    Chen, W.-N.U.3    Jacobs, J.M.4
  • 30
    • 14844360847 scopus 로고    scopus 로고
    • Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome
    • Qian, W.-J., Liu, T., Monroe, M. E., Strittmatter, E. F. et al., Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome. J. Proteome Res. 2004, 4, 53-62.
    • (2004) J. Proteome Res. , vol.4 , pp. 53-62
    • Qian, W.-J.1    Liu, T.2    Monroe, M.E.3    Strittmatter, E.F.4
  • 31
    • 4544282394 scopus 로고    scopus 로고
    • High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology
    • Liu, T., Qian, W.-J., Strittmatter, E. F., Camp, D. G. et al., High-throughput comparative proteome analysis using a quantitative cysteinyl-peptide enrichment technology. Anal. Chem. 2004, 76, 5345-5353.
    • (2004) Anal. Chem. , vol.76 , pp. 5345-5353
    • Liu, T.1    Qian, W.-J.2    Strittmatter, E.F.3    Camp, D.G.4
  • 32
    • 32344447939 scopus 로고    scopus 로고
    • Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment
    • Wang, H., Qian, W.-J., Chin, M. H., Petyuk, V. A. et al., Characterization of the mouse brain proteome using global proteomic analysis complemented with cysteinyl-peptide enrichment. J. Proteome Res. 2006, 5, 361-369.
    • (2006) J. Proteome Res. , vol.5 , pp. 361-369
    • Wang, H.1    Qian, W.-J.2    Chin, M.H.3    Petyuk, V.A.4
  • 33
    • 77952795673 scopus 로고    scopus 로고
    • Characterization of the adult zebrafish cardiac proteome using online pH gradient strong cation exchange-RP 2-D LC coupled with ESI MS/MS
    • Zhang, J., Lanham, K. A., Peterson, R. E., Heideman, W., Li, L., Characterization of the adult zebrafish cardiac proteome using online pH gradient strong cation exchange-RP 2-D LC coupled with ESI MS/MS. J. Sep. Sci. 2010, 33, 1462-1471.
    • (2010) J. Sep. Sci. , vol.33 , pp. 1462-1471
    • Zhang, J.1    Lanham, K.A.2    Peterson, R.E.3    Heideman, W.4    Li, L.5
  • 34
    • 33646264529 scopus 로고    scopus 로고
    • Advances in proteomics data analysis and display using an accurate mass and time tag approach
    • Zimmer, J. S. D., Monroe, M. E., Qian, W.-J., Smith, R. D., Advances in proteomics data analysis and display using an accurate mass and time tag approach. Mass Spectrom. Rev. 2006, 25, 450-482.
    • (2006) Mass Spectrom. Rev. , vol.25 , pp. 450-482
    • Zimmer, J.S.D.1    Monroe, M.E.2    Qian, W.-J.3    Smith, R.D.4
  • 35
    • 0347361594 scopus 로고    scopus 로고
    • Ultrasensitive proteomics using high-efficiency on-line micro-SPE-NanoLC-NanoESI MS and MS/MS
    • Shen, Y., Tolić, N., Masselon, C., Paša-Tolić, L. et al., Ultrasensitive proteomics using high-efficiency on-line micro-SPE-NanoLC-NanoESI MS and MS/MS. Anal. Chem. 2003, 76, 144-154.
    • (2003) Anal. Chem. , vol.76 , pp. 144-154
    • Shen, Y.1    Tolić, N.2    Masselon, C.3    Paša-Tolić, L.4


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