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Volumn 12, Issue 8, 2002, Pages 1210-1220

Parallel identification of new genes in Saccharomyces cerevisiae

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; FUNGAL GENE; GENE EXPRESSION PROFILING; GENE IDENTIFICATION; GENOME ANALYSIS; MASS SPECTROMETER; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; PRIORITY JOURNAL; RNA TRANSCRIPTION; RNA TRANSLATION; SACCHAROMYCES CEREVISIAE; SERIAL ANALYSIS OF GENE EXPRESSION; STRUCTURAL PROTEOMICS; AMINO ACID SEQUENCE; ANIMAL; BIOLOGY; CHROMOSOME; CHROMOSOME MAP; CLASSIFICATION; GENETIC DATABASE; GENETIC TRANSCRIPTION; GENETICS; GENOME; METHODOLOGY; MOLECULAR GENETICS; MOUSE; PHYSIOLOGY; PROTEIN SYNTHESIS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

EID: 0036675816     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.226802     Document Type: Article
Times cited : (37)

References (36)
  • 1
    • 0032534790 scopus 로고    scopus 로고
    • Yeast mitochondrial F1F0-ATP synthase exists as a dimer: Identification of three dimer-specific subunits
    • Arnold, I., Pfeiffer, K., Neupert, W., Stuart, R.A., and Schagger, H. 1998. Yeast mitochondrial F1F0-ATP synthase exists as a dimer: Identification of three dimer-specific subunits. Embo J 17: 7170-7178.
    • (1998) Embo J , vol.17 , pp. 7170-7178
    • Arnold, I.1    Pfeiffer, K.2    Neupert, W.3    Stuart, R.A.4    Schagger, H.5
  • 2
    • 0030960992 scopus 로고    scopus 로고
    • Small open reading frames: Beautiful needles in the haystack
    • Basrai, M.A., Hieter, P., and Boeke, J.D. 1997. Small open reading frames: Beautiful needles in the haystack. Genome Res. 7: 768-771.
    • (1997) Genome Res. , vol.7 , pp. 768-771
    • Basrai, M.A.1    Hieter, P.2    Boeke, J.D.3
  • 3
    • 0032826786 scopus 로고    scopus 로고
    • NORF5/HUG1 is a component of the MEC1-mediated checkpoint response to DNA damage and replication arrest in Saccharomyces cerevisiae
    • Basrai, M.A., Velculescu, V.E., Kinzler, K.W., and Hieter, P. 1999. NORF5/HUG1 is a component of the MEC1-mediated checkpoint response to DNA damage and replication arrest in Saccharomyces cerevisiae. Mol. Cell Biol. 19: 7041-7049.
    • (1999) Mol. Cell Biol. , vol.19 , pp. 7041-7049
    • Basrai, M.A.1    Velculescu, V.E.2    Kinzler, K.W.3    Hieter, P.4
  • 8
    • 0033780450 scopus 로고    scopus 로고
    • A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression
    • Cohen, B.A., Mitra, R.D., Hughes, J.D., and Church, G.M. 2000. A computational analysis of whole-genome expression data reveals chromosomal domains of gene expression. Nat. Genet. 26: 183-186.
    • (2000) Nat. Genet. , vol.26 , pp. 183-186
    • Cohen, B.A.1    Mitra, R.D.2    Hughes, J.D.3    Church, G.M.4
  • 9
    • 0027605113 scopus 로고
    • DNA damage and cell cycle regulation of ribonucleotide reductase
    • Elledge, S.J., Zhou, Z., Allen, J.B., and Navas, T.A. 1993. DNA damage and cell cycle regulation of ribonucleotide reductase. Bioessays 15: 333-339.
    • (1993) Bioessays , vol.15 , pp. 333-339
    • Elledge, S.J.1    Zhou, Z.2    Allen, J.B.3    Navas, T.A.4
  • 10
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng, J.K., McCormack, A.L., and Yates, J.R.I. 1994. An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 5: 976-989.
    • (1994) J. Am. Soc. Mass Spectrom. , vol.5 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates, J.R.I.3
  • 12
    • 0030813561 scopus 로고    scopus 로고
    • Identification of RNR4, encoding a second essential small subunit of ribonucleotide reductase in Saccharomyces cerevisiae
    • Huang, M. and Elledge, S.J. 1997. Identification of RNR4, encoding a second essential small subunit of ribonucleotide reductase in Saccharomyces cerevisiae. Mol. Cell Biol. 17: 6105-6113.
    • (1997) Mol. Cell Biol. , vol.17 , pp. 6105-6113
    • Huang, M.1    Elledge, S.J.2
  • 14
    • 0033573938 scopus 로고    scopus 로고
    • Global response of Saccharomyces cerevisiae to an alkylating agent
    • Jelinsky, S.A. and Samson, L.D. 1999. Global response of Saccharomyces cerevisiae to an alkylating agent. Proc. Natl. Acad. Sci. 96: 1486-1491.
    • (1999) Proc. Natl. Acad. Sci. , vol.96 , pp. 1486-1491
    • Jelinsky, S.A.1    Samson, L.D.2
  • 15
    • 0033772765 scopus 로고    scopus 로고
    • Regulatory networks revealed by transcriptional profiling of damaged Saccharomyces cerevisiae cells: Rpn4 links base excision repair with proteasomes
    • Jelinsky, S.A., Estep, P., Church, G.M., and Samson, L.D. 2000. Regulatory networks revealed by transcriptional profiling of damaged Saccharomyces cerevisiae cells: rpn4 links base excision repair with proteasomes. Mol. Cell Biol. 20: 8157-8167.
    • (2000) Mol. Cell Biol. , vol.20 , pp. 8157-8167
    • Jelinsky, S.A.1    Estep, P.2    Church, G.M.3    Samson, L.D.4
  • 17
    • 0029965718 scopus 로고    scopus 로고
    • Distinct roles of yeast MEC and RAD checkpoint genes in transcriptional induction after DNA damage and implications for function
    • Kiser, G.L. and Weinert, T.A. 1996. Distinct roles of yeast MEC and RAD checkpoint genes in transcriptional induction after DNA damage and implications for function. Mol. Biol. Cell 7: 703-718.
    • (1996) Mol. Biol. Cell , vol.7 , pp. 703-718
    • Kiser, G.L.1    Weinert, T.A.2
  • 19
    • 0025809264 scopus 로고
    • RAP1 protein activates and silences transcription of mating-type genes in yeast
    • Kurtz, S. and Shore, D. 1991. RAP1 protein activates and silences transcription of mating-type genes in yeast. Genes Dev. 5: 616-628.
    • (1991) Genes Dev. , vol.5 , pp. 616-628
    • Kurtz, S.1    Shore, D.2
  • 20
    • 0034659898 scopus 로고    scopus 로고
    • Genomics, gene expression and DNA arrays
    • Lockhart, D.J. and Winzeler, E.A. 2000. Genomics, gene expression and DNA arrays. Nature 405: 827-836.
    • (2000) Nature , vol.405 , pp. 827-836
    • Lockhart, D.J.1    Winzeler, E.A.2
  • 21
    • 0033004441 scopus 로고    scopus 로고
    • Rpn4p acts as a transcription factor by binding to PACE, a nonamer box found upstream of 26S proteasomal and other genes in yeast
    • Mannhaupt, G., Schnall, R., Karpov, V., Vetter, I., and Feldmann, H. 1999. Rpn4p acts as a transcription factor by binding to PACE, a nonamer box found upstream of 26S proteasomal and other genes in yeast. FEBS Lett 450: 27-34.
    • (1999) FEBS Lett. , vol.450 , pp. 27-34
    • Mannhaupt, G.1    Schnall, R.2    Karpov, V.3    Vetter, I.4    Feldmann, H.5
  • 22
    • 0030765448 scopus 로고    scopus 로고
    • MIPS: A database for protein sequences, homology data and yeast genome information
    • Mewes, H.W., Albermann, K., Heumann, K., Liebl, S., and Pfeiffer, F. 1997. MIPS: A database for protein sequences, homology data and yeast genome information. Nucleic Acids Res. 25: 28-30.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 28-30
    • Mewes, H.W.1    Albermann, K.2    Heumann, K.3    Liebl, S.4    Pfeiffer, F.5
  • 24
    • 0026320245 scopus 로고
    • Association of RAP1 binding sites with stringent control of ribosomal protein gene transcription in Saccharomyces cerevisiae
    • Moehle, C.M. and Hinnebusch, A.G. 1991. Association of RAP1 binding sites with stringent control of ribosomal protein gene transcription in Saccharomyces cerevisiae. Mol. Cell Biol. 11: 2723-2735.
    • (1991) Mol. Cell Biol. , vol.11 , pp. 2723-2735
    • Moehle, C.M.1    Hinnebusch, A.G.2
  • 25
    • 0030856840 scopus 로고    scopus 로고
    • Analysis of the yeast genome: Identification of new non-coding and small ORF-containing RNAs
    • Olivas, W.M., Muhlrad, D., and Parker, R. 1997. Analysis of the yeast genome: Identification of new non-coding and small ORF-containing RNAs. Nucleic Acids Res. 25: 4619-4625.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 4619-4625
    • Olivas, W.M.1    Muhlrad, D.2    Parker, R.3
  • 26
    • 0031037911 scopus 로고    scopus 로고
    • Regulation of gene expression during meiosis in Saccharomyces cerevisiae: SPR3 is controlled by both ABFI and a new sporulation control element
    • Ozsarac, N., Straffon, M.J., Dalton, H.E., and Dawes, I.W. 1997. Regulation of gene expression during meiosis in Saccharomyces cerevisiae: SPR3 is controlled by both ABFI and a new sporulation control element. Mol. Cell Biol. 17: 1152-1159.
    • (1997) Mol. Cell Biol. , vol.17 , pp. 1152-1159
    • Ozsarac, N.1    Straffon, M.J.2    Dalton, H.E.3    Dawes, I.W.4
  • 28
    • 0024418861 scopus 로고
    • Relationships between sensitivity to hydroxyurea and 4-methyl-5-amino-1- formylisoquinoline thiosemicarbazone (MAIO) and ribonucleotide reductase RNR2 mRNA levels in strains of Saccharomyces cerevisiae
    • Rittberg, D.A. and Wright, J.A. 1989. Relationships between sensitivity to hydroxyurea and 4-methyl-5-amino-1-formylisoquinoline thiosemicarbazone (MAIO) and ribonucleotide reductase RNR2 mRNA levels in strains of Saccharomyces cerevisiae. Biochem. Cell Biol. 67: 352-357.
    • (1989) Biochem. Cell Biol. , vol.67 , pp. 352-357
    • Rittberg, D.A.1    Wright, J.A.2
  • 30
    • 0023650543 scopus 로고
    • The codon adaptation index - A measure of directional synonymous codon usage bias, and its potential applications
    • Sharp, P.M. and Li, W.H. 1987. The codon adaptation index - a measure of directional synonymous codon usage bias, and its potential applications. Nucleic Acids Res. 15: 1281-1295.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 1281-1295
    • Sharp, P.M.1    Li, W.H.2
  • 33
    • 0035106351 scopus 로고    scopus 로고
    • Large-scale analysis of the yeast proteome by multidimensional protein identification technology
    • Washburn, M.P., Wolters, D., and Yates, 3rd, J.R., 2001. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 19: 242-247.
    • (2001) Nat. Biotechnol. , vol.19 , pp. 242-247
    • Washburn, M.P.1    Wolters, D.2    Yates III, J.R.3
  • 34
  • 35
    • 0035582244 scopus 로고    scopus 로고
    • An automated multidimensional protein identification technology for shotgun proteomics
    • Wolters, D.A., Washburn, M.P., and Yates, 3rd, J.R. 2001. An automated multidimensional protein identification technology for shotgun proteomics. Anal. Chem. 73: 5683-5690.
    • (2001) Anal. Chem. , vol.73 , pp. 5683-5690
    • Wolters, D.A.1    Washburn, M.P.2    Yates III, J.R.3
  • 36
    • 24644478417 scopus 로고    scopus 로고
    • Genomics Institute of the Novartis Research Foundation site
    • http://pub.gnf.org/~ewinzeler/identification_of_new_gene.htm; Genomics Institute of the Novartis Research Foundation site.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.