-
1
-
-
58949085660
-
Genome evolution in plant pathogenic and symbiotic fungi
-
doi: 10.1016/S0065-2296(08)00603-4
-
Aguileta, G., Hood, M., Refregier, G., Giraud, T., Kader, J., and Delseny, M. (2009). Genome evolution in plant pathogenic and symbiotic fungi. Adv. Bot. Res. 49, 151-193. doi: 10.1016/S0065-2296(08)00603-4
-
(2009)
Adv. Bot. Res.
, vol.49
, pp. 151-193
-
-
Aguileta, G.1
Hood, M.2
Refregier, G.3
Giraud, T.4
Kader, J.5
Delseny, M.6
-
2
-
-
16544393499
-
Host-parasite coevolutionary conflict between Arabidopsis and downy mildew
-
doi: 10.1126/science.1104022
-
Allen, R., Bittner-Eddy, P., Grenvitte-Briggs, L., Meitz, J., Rehmany, A., Rose, L., et al. (2004). Host-parasite coevolutionary conflict between Arabidopsis and downy mildew. Science 306, 457, 1957-1960. doi: 10.1126/science.1104022
-
(2004)
Science
, vol.306
, Issue.457
, pp. 1957-1960
-
-
Allen, R.1
Bittner-Eddy, P.2
Grenvitte-Briggs, L.3
Meitz, J.4
Rehmany, A.5
Rose, L.6
-
3
-
-
78049247057
-
Genome size variation in the pine fusiform rust pathogen Cronartium quercuum f. sp. fusiforme as determined by flow cytometry
-
doi: 10.3852/10-040
-
Anderson, C., Kubisiak, T., Nelson, C., Smith, J., and Davis, J. (2010). Genome size variation in the pine fusiform rust pathogen Cronartium quercuum f. sp. fusiforme as determined by flow cytometry. Mycologia 102, 1295-1302. doi: 10.3852/10-040
-
(2010)
Mycologia
, vol.102
, pp. 1295-1302
-
-
Anderson, C.1
Kubisiak, T.2
Nelson, C.3
Smith, J.4
Davis, J.5
-
4
-
-
73349090580
-
Diversity and evolution of effector loci in natural populations of the plant pathogen Melampsora lini
-
doi: 10.1093/molbev/msp166
-
Barrett, L., Thrall, P., Dodds, P., van der Merwe, M., Linde, C., Lawrence, G., et al. (2009). Diversity and evolution of effector loci in natural populations of the plant pathogen Melampsora lini. Mol. Biol. Evol. 26, 2499-2513. doi: 10.1093/molbev/msp166
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 2499-2513
-
-
Barrett, L.1
Thrall, P.2
Dodds, P.3
van der Merwe, M.4
Linde, C.5
Lawrence, G.6
-
5
-
-
3042521098
-
Improved prediction of signal peptides: SignalP 3.0
-
doi: 10.1016/j.jmb.2004.05.028
-
Bendtsen, J., Nielsen, H., Von Heijne, G., and Brunak, S. (2004). Improved prediction of signal peptides: SignalP 3.0. J. Mol. Biol. 340, 783-795. doi: 10.1016/j.jmb.2004.05.028
-
(2004)
J. Mol. Biol.
, vol.340
, pp. 783-795
-
-
Bendtsen, J.1
Nielsen, H.2
Von Heijne, G.3
Brunak, S.4
-
6
-
-
84900848599
-
Using transcription of six Puccinia triticina races to identify the effective secretome during infection of wheat
-
doi: 10.3389/fpls.2013.00520
-
Bruce, M., Neugebauer, K. A., Joly, D. L., Migeon, P., Cuomo, C. A., Wang, S., et al. (2014). Using transcription of six Puccinia triticina races to identify the effective secretome during infection of wheat. Front. Plant Sci. 4:520. doi: 10.3389/fpls.2013.00520
-
(2014)
Front. Plant Sci.
, vol.4
, pp. 520
-
-
Bruce, M.1
Neugebauer, K.A.2
Joly, D.L.3
Migeon, P.4
Cuomo, C.A.5
Wang, S.6
-
7
-
-
80052327127
-
Next Generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp tritici, the causal agent of wheat stripe rust
-
doi: 10.1371/journal.pone.0024230
-
Cantu, D., Govindarajulu, M., Kozik, A., Wang, M., Chen, X., Kojima, K., et al. (2011). Next Generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp tritici, the causal agent of wheat stripe rust. PLoS ONE 6:e24230. doi: 10.1371/journal.pone.0024230
-
(2011)
PLoS ONE
, vol.6
-
-
Cantu, D.1
Govindarajulu, M.2
Kozik, A.3
Wang, M.4
Chen, X.5
Kojima, K.6
-
8
-
-
0031278132
-
The adenylate cyclase gene MAC1 of Magnaporthe grisea controls appressorium formation and other aspects of growth and development
-
doi: 10.1105/tpc.9.11.1973
-
Choi, W., and Dean, R. (1997). The adenylate cyclase gene MAC1 of Magnaporthe grisea controls appressorium formation and other aspects of growth and development. Plant Cell 9, 1973-1983. doi: 10.1105/tpc.9.11.1973
-
(1997)
Plant Cell
, vol.9
, pp. 1973-1983
-
-
Choi, W.1
Dean, R.2
-
9
-
-
0033213017
-
Magnaporthe grisea Pth11p is a novel plasma membrane protein that mediates appressorium differentiation in response to inductive substrate cues
-
doi: 10.1105/tpc.11.10.2013
-
DeZwaan, T., Carroll, A., Valent, B., and Sweigard, J. (1999). Magnaporthe grisea Pth11p is a novel plasma membrane protein that mediates appressorium differentiation in response to inductive substrate cues. Plant Cell 11, 2013-2030. doi: 10.1105/tpc.11.10.2013
-
(1999)
Plant Cell
, vol.11
, pp. 2013-2030
-
-
DeZwaan, T.1
Carroll, A.2
Valent, B.3
Sweigard, J.4
-
10
-
-
68749119746
-
Effectors of biotrophic fungi and oomycetes: Pathogenicity factors and triggers of host resistance
-
doi: 10.1111/j.1469-8137.2009.02922.x
-
Dodds, P., Rafiqi, M., Gan, P., Hardham, A., Jones, D., and Ellis, J. (2009). Effectors of biotrophic fungi and oomycetes: pathogenicity factors and triggers of host resistance. New Phytol. 183, 993-999. doi: 10.1111/j.1469-8137.2009.02922.x
-
(2009)
New Phytol.
, vol.183
, pp. 993-999
-
-
Dodds, P.1
Rafiqi, M.2
Gan, P.3
Hardham, A.4
Jones, D.5
Ellis, J.6
-
11
-
-
79959340303
-
Obligate biotrophy features unraveled by the genomic analysis of rust fungi
-
doi: 10.1073/pnas.1019315108
-
Duplessis, S., Cuomo, C. A., Lin, Y. C., Aerts, A., Tisserant, E., Veneault-Fourrey, C., et al. (2011b). Obligate biotrophy features unraveled by the genomic analysis of rust fungi. Proc. Natl. Acad. Sci. U.S.A. 108, 9166-9171. doi: 10.1073/pnas.1019315108
-
(2011)
Proc. Natl. Acad. Sci. U.S.A.
, vol.108
, pp. 9166-9171
-
-
Duplessis, S.1
Cuomo, C.A.2
Lin, Y.C.3
Aerts, A.4
Tisserant, E.5
Veneault-Fourrey, C.6
-
12
-
-
79959353285
-
Melampsora larici-populina transcript profiling during germination and timecourse infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy
-
doi: 10.1094/MPMI-01-11-0006
-
Duplessis, S., Hacquard, S., Delaruelle, C., Tisserant, E., Frey, P., Martin, F., et al. (2011a). Melampsora larici-populina transcript profiling during germination and timecourse infection of poplar leaves reveals dynamic expression patterns associated with virulence and biotrophy. Mol. Plant Microbe Interact. 24, 808-818. doi: 10.1094/MPMI-01-11-0006
-
(2011)
Mol. Plant Microbe Interact.
, vol.24
, pp. 808-818
-
-
Duplessis, S.1
Hacquard, S.2
Delaruelle, C.3
Tisserant, E.4
Frey, P.5
Martin, F.6
-
13
-
-
79961228770
-
The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi
-
doi: 10.1126/science.1205411
-
Eastwood, D. C., Floudas, D., Binder, M., Majcherczyk, A., Schneider, P., Aerts, A., et al. (2011). The plant cell wall-decomposing machinery underlies the functional diversity of forest fungi. Science 333, 762-765. doi: 10.1126/science.1205411
-
(2011)
Science
, vol.333
, pp. 762-765
-
-
Eastwood, D.C.1
Floudas, D.2
Binder, M.3
Majcherczyk, A.4
Schneider, P.5
Aerts, A.6
-
14
-
-
13244255415
-
MUSCLE: A multiple sequence alignment method with reduced time and space complexity
-
doi: 10.1186/1471-2105-5-113
-
Edgar, R. (2004). MUSCLE: a multiple sequence alignment method with reduced time and space complexity. BMC Bioinformatics 5:113. doi: 10.1186/1471-2105-5-113
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 113
-
-
Edgar, R.1
-
15
-
-
0033600935
-
Prediction of potential GPI-modification sites in proprotein sequences
-
Eisenhaber, B., Bork, P., and Eisenhaber, F. (1999). Prediction of potential GPI-modification sites in proprotein sequences. J. Mol. Biol. 292, 741-758.
-
(1999)
J. Mol. Biol.
, vol.292
, pp. 741-758
-
-
Eisenhaber, B.1
Bork, P.2
Eisenhaber, F.3
-
16
-
-
68249085816
-
Recent progress in discovery and functional analysis of effector proteins of fungal and oomycete plant pathogens
-
doi: 10.1016/j.pbi.2009.05.004
-
Ellis, J., Rafiqi, M., Gan, P., Chakrabarti, A., and Dodds, P. (2009). Recent progress in discovery and functional analysis of effector proteins of fungal and oomycete plant pathogens. Curr. Opin. Plant Biol. 12, 399-405. doi: 10.1016/j.pbi.2009.05.004
-
(2009)
Curr. Opin. Plant Biol.
, vol.12
, pp. 399-405
-
-
Ellis, J.1
Rafiqi, M.2
Gan, P.3
Chakrabarti, A.4
Dodds, P.5
-
17
-
-
0034697980
-
Predicting subcellular localization of proteins based on their N-terminal amino acid sequence
-
doi: 10.1006/jmbi.2000.3903
-
Emanuelsson, O., Nielsen, H., Brunak, S., and Von Heijne, G. (2000). Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. J. Mol. Biol. 300, 1005-1016. doi: 10.1006/jmbi.2000.3903
-
(2000)
J. Mol. Biol.
, vol.300
, pp. 1005-1016
-
-
Emanuelsson, O.1
Nielsen, H.2
Brunak, S.3
Von Heijne, G.4
-
18
-
-
84887929250
-
Filamentous plant pathogen effectors in action
-
doi: 10.1038/nrmicro3119
-
Giraldo, M., and Valent, B. (2013). Filamentous plant pathogen effectors in action. Nat. Rev. Microbiol. 11, 800-814. doi: 10.1038/nrmicro3119
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 800-814
-
-
Giraldo, M.1
Valent, B.2
-
19
-
-
10244239321
-
Life with 6000 genes
-
Goffeau, A., Barrell, B., Bussey, H., Davis, R., Dujon, B., Feldmann, H., et al. (1996). Life with 6000 genes. Science 274, 546-567.
-
(1996)
Science
, vol.274
, pp. 546-567
-
-
Goffeau, A.1
Barrell, B.2
Bussey, H.3
Davis, R.4
Dujon, B.5
Feldmann, H.6
-
20
-
-
33847295811
-
URec: A system for unrooted reconciliation
-
doi: 10.1093/bioinformatics/btl634
-
Gorecki, P., and Tiuryn, J. (2007). URec: a system for unrooted reconciliation. Bioinformatics 23, 511-512. doi: 10.1093/bioinformatics/btl634
-
(2007)
Bioinformatics
, vol.23
, pp. 511-512
-
-
Gorecki, P.1
Tiuryn, J.2
-
21
-
-
0011637837
-
An ultrastructural comparison of monokaryotic and dikaryotic haustoria formed by the fusiform rust fungus Cronartium-quercuum f-sp fusiforme
-
doi: 10.1139/b82-352
-
Gray, D., Amerson, H., and Van Dyke, C. (1982). An ultrastructural comparison of monokaryotic and dikaryotic haustoria formed by the fusiform rust fungus Cronartium-quercuum f-sp fusiforme. Can. J. Bot. 60, 2914-2922. doi: 10.1139/b82-352
-
(1982)
Can. J. Bot.
, vol.60
, pp. 2914-2922
-
-
Gray, D.1
Amerson, H.2
Van Dyke, C.3
-
22
-
-
84891752209
-
MycoCosm portal: Gearing up for 1000 fungal genomes
-
doi: 10.1093/nar/gkt1183
-
Grigoriev, I., Nikitin, R., Haridas, S., Kuo, A., Ohm, R., Otillar, R., et al. (2014). MycoCosm portal: gearing up for 1000 fungal genomes. Nucleic Acids Res. 42, D699-D704. doi: 10.1093/nar/gkt1183
-
(2014)
Nucleic Acids Res.
, vol.42
-
-
Grigoriev, I.1
Nikitin, R.2
Haridas, S.3
Kuo, A.4
Ohm, R.5
Otillar, R.6
-
23
-
-
84863115537
-
A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (Poplar Leaf Rust)
-
doi: 10.1094/MPMI-09-11-0238
-
Hacquard, S., Joly, D., Lin, Y., Tisserant, E., Feau, N., Delaruelle, C., et al. (2012). A comprehensive analysis of genes encoding small secreted proteins identifies candidate effectors in Melampsora larici-populina (Poplar Leaf Rust). Mol. Plant Microbe Interact. 25, 279-293. doi: 10.1094/MPMI-09-11-0238
-
(2012)
Mol. Plant Microbe Interact.
, vol.25
, pp. 279-293
-
-
Hacquard, S.1
Joly, D.2
Lin, Y.3
Tisserant, E.4
Feau, N.5
Delaruelle, C.6
-
24
-
-
0000207681
-
TMbase-A database of membrane spanning protein segments
-
Hofmann, K. (1993). TMbase-A database of membrane spanning protein segments. Biol. Chem. 374, 166.
-
(1993)
Biol. Chem.
, vol.374
, pp. 166
-
-
Hofmann, K.1
-
25
-
-
84858602406
-
InterPro in 2011: New developments in the family and domain prediction database
-
doi: 10.1093/nar/gkr948
-
Hunter, S., Jones, P., Mitchell, A., Apweiler, R., Attwood, T., Bateman, A., et al. (2012). InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 40, D306-D312. doi: 10.1093/nar/gkr948
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Hunter, S.1
Jones, P.2
Mitchell, A.3
Apweiler, R.4
Attwood, T.5
Bateman, A.6
-
26
-
-
77955400711
-
Comparative analysis of secreted protein evolution using expressed sequence tags from four poplar leaf rusts (Melampsora spp.)
-
doi: 10.1186/1471-2164-11-422
-
Joly, D., Feau, N., Tanguay, P., and Hamelin, R. (2010). Comparative analysis of secreted protein evolution using expressed sequence tags from four poplar leaf rusts (Melampsora spp.). BMC Genomics 11: 422. doi: 10.1186/1471-2164-11-422
-
(2010)
BMC Genomics
, vol.11
, pp. 422
-
-
Joly, D.1
Feau, N.2
Tanguay, P.3
Hamelin, R.4
-
27
-
-
33751100626
-
The plant immune system
-
doi: 10.1038/nature05286
-
Jones, J., and Dangl, J. (2006). The plant immune system. Nature 444, 323-329. doi: 10.1038/nature05286
-
(2006)
Nature
, vol.444
, pp. 323-329
-
-
Jones, J.1
Dangl, J.2
-
28
-
-
33750597877
-
Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis
-
doi: 10.1038/nature05248
-
Kamper, J., Kahmann, R., Bolker, M., Ma, L., Brefort, T., Saville, B., et al. (2006). Insights from the genome of the biotrophic fungal plant pathogen Ustilago maydis. Nature 444, 97-101. doi: 10.1038/nature05248
-
(2006)
Nature
, vol.444
, pp. 97-101
-
-
Kamper, J.1
Kahmann, R.2
Bolker, M.3
Ma, L.4
Brefort, T.5
Saville, B.6
-
29
-
-
0035910270
-
Predicting transmembrane protein topology with a hidden Markov model: Application to complete genomes
-
doi: 10.1006/jmbi.2000.4315
-
Krogh, A., Larsson, B., Von Heijne, G., and Sonnhammer, E. (2001). Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. J. Mol. Biol. 305, 567-580. doi: 10.1006/jmbi.2000.4315
-
(2001)
J. Mol. Biol.
, vol.305
, pp. 567-580
-
-
Krogh, A.1
Larsson, B.2
Von Heijne, G.3
Sonnhammer, E.4
-
30
-
-
78751613313
-
A genomic map enriched for markers linked to Avr1 in Cronartium quercuum f. sp. fusiforme
-
doi: 10.1016/j.fgb.2010.09.008
-
Kubisiak, T., Anderson, C., Amerson, H., Smith, J., Davis, J., and Nelson, C. (2011). A genomic map enriched for markers linked to Avr1 in Cronartium quercuum f. sp. fusiforme. Fungal Genet. Biol. 48, 266-274. doi: 10.1016/j.fgb.2010.09.008
-
(2011)
Fungal Genet. Biol.
, vol.48
, pp. 266-274
-
-
Kubisiak, T.1
Anderson, C.2
Amerson, H.3
Smith, J.4
Davis, J.5
Nelson, C.6
-
31
-
-
0033839705
-
Fruiting body production in basidiomycetes
-
doi: 10.1007/s002530000396
-
Kues, U., and Liu, Y. (2000). Fruiting body production in basidiomycetes. Appl. Microbiol. Biotechnol. 54, 141-152. doi: 10.1007/s002530000396
-
(2000)
Appl. Microbiol. Biotechnol.
, vol.54
, pp. 141-152
-
-
Kues, U.1
Liu, Y.2
-
32
-
-
79955575438
-
Multiple multi-copper oxidase gene families in basidiomycetes-what for?
-
doi: 10.2174/138920211795564377
-
Kües, U., and Rühl, M. (2011). Multiple multi-copper oxidase gene families in basidiomycetes-what for? Curr. Genomics 12, 72-94. doi: 10.2174/138920211795564377
-
(2011)
Curr. Genomics
, vol.12
, pp. 72-94
-
-
Kües, U.1
Rühl, M.2
-
33
-
-
0347927334
-
An eight-cysteine-containing CFEM domain unique to a group of fungal membrane proteins
-
doi: 10.1038/nature03449
-
Kulkarni, R., Kelkar, H., and Dean, R. (2003). An eight-cysteine-containing CFEM domain unique to a group of fungal membrane proteins. Trends Biochem. Sci. 28, 118-121. doi: 10.1038/nature03449
-
(2003)
Trends Biochem. Sci.
, vol.28
, pp. 118-121
-
-
Kulkarni, R.1
Kelkar, H.2
Dean, R.3
-
34
-
-
0037373742
-
Biosynthesis of fungal melanins and their importance for human pathogenic fungi
-
doi: 10.1016/S1087-1845(02)00526-1
-
Langfelder, K., Streibel, M., Jahn, B., Haase, G., and Brakhage, A. (2003). Biosynthesis of fungal melanins and their importance for human pathogenic fungi. Fungal Genet. Biol. 38, 143-158. doi: 10.1016/S1087-1845(02)00526-1
-
(2003)
Fungal Genet. Biol.
, vol.38
, pp. 143-158
-
-
Langfelder, K.1
Streibel, M.2
Jahn, B.3
Haase, G.4
Brakhage, A.5
-
35
-
-
0034788827
-
Fungal laccase: Properties and activity on lignin
-
doi: 10.1002/1521-4028(200107)41:3/4<185::AID-JOBM185>3.0.CO;2-T
-
Leonowicz, A., Cho, N., Luterek, J., Wilkolazka, A., Wojtas-Wasilewska, M., Matuszewska, A., et al. (2001). Fungal laccase: properties and activity on lignin. J. Basic Microb. 41, 185-227. doi: 10.1002/1521-4028(200107)41:3/4<185::AID-JOBM185>3.0.CO;2-T
-
(2001)
J. Basic Microb.
, vol.41
, pp. 185-227
-
-
Leonowicz, A.1
Cho, N.2
Luterek, J.3
Wilkolazka, A.4
Wojtas-Wasilewska, M.5
Matuszewska, A.6
-
36
-
-
79960004119
-
Interactive Tree Of Life v2: Online annotation and display of phylogenetic trees made easy
-
doi: 10.1093/nar/gkr201
-
Letunic, I., and Bork, P. (2011). Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy. Nucleic Acids Res. 39, W475-W478. doi: 10.1093/nar/gkr201
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Letunic, I.1
Bork, P.2
-
37
-
-
0141519279
-
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
-
doi: 10.1101/gr.122450
-
Li, L., Stoeckert, C., and Roos, D. (2003). OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res. 13, 2178-2189. doi: 10.1101/gr.122450
-
(2003)
Genome Res.
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, C.2
Roos, D.3
-
38
-
-
77049096911
-
Lignin-modifying enzymes in filamentous basidiomycetes-ecological, functional and phylogenetic review
-
doi: 10.1002/jobm.200900338
-
Lundell, T., Makela, M., and Hilden, K. (2010). Lignin-modifying enzymes in filamentous basidiomycetes-ecological, functional and phylogenetic review. J. Basic Microb. 50, 5-20. doi: 10.1002/jobm.200900338
-
(2010)
J. Basic Microb.
, vol.50
, pp. 5-20
-
-
Lundell, T.1
Makela, M.2
Hilden, K.3
-
39
-
-
40449120632
-
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
-
doi: 10.1038/nature06556
-
Martin, F., Aerts, A., Ahren, D., Brun, A., Danchin, E., Duchaussoy, F., et al. (2008). The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature 452, 88-92. doi: 10.1038/nature06556
-
(2008)
Nature
, vol.452
, pp. 88-92
-
-
Martin, F.1
Aerts, A.2
Ahren, D.3
Brun, A.4
Danchin, E.5
Duchaussoy, F.6
-
40
-
-
2542601548
-
Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78
-
doi: 10.1038/nbt967
-
Martinez, D., Larrondo, L. F., Putnam, N., Gelpke, M. D. S., Huang, K., Chapman, J., et al. (2004). Genome sequence of the lignocellulose degrading fungus Phanerochaete chrysosporium strain RP78. Nat. Biotechnol. 22, 695-700. doi: 10.1038/nbt967
-
(2004)
Nat. Biotechnol.
, vol.22
, pp. 695-700
-
-
Martinez, D.1
Larrondo, L.F.2
Putnam, N.3
Gelpke, M.D.S.4
Huang, K.5
Chapman, J.6
-
41
-
-
0030027285
-
Ultrastructure of telia and teliospores of the rust fungus Cronartium quercuum f. sp. fusiforme
-
doi: 10.2307/376078
-
Mims, C. W., Liljebjelke, K. A., and Covert, S. F. (1996). Ultrastructure of telia and teliospores of the rust fungus Cronartium quercuum f. sp. fusiforme. Mycologia 88, 47-56. doi: 10.2307/376078
-
(1996)
Mycologia
, vol.88
, pp. 47-56
-
-
Mims, C.W.1
Liljebjelke, K.A.2
Covert, S.F.3
-
42
-
-
84867919345
-
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche
-
doi: 10.1073/pnas.1206847109
-
Morin, E., Kohler, A., Baker, A. R., Foulongne-Oriol, M., Lombard, V., Nagye, L. G., et al. (2012). Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche. Proc. Natl. Acad. Sci. U.S.A. 109, 17501-17506. doi: 10.1073/pnas.1206847109
-
(2012)
Proc. Natl. Acad. Sci. U.S.A.
, vol.109
, pp. 17501-17506
-
-
Morin, E.1
Kohler, A.2
Baker, A.R.3
Foulongne-Oriol, M.4
Lombard, V.5
Nagye, L.G.6
-
43
-
-
0030614959
-
Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites
-
doi: 10.1093/protein/10.1.1
-
Nielsen, H., Engelbrecht, J., Brunak, S., and von Heijne, G. (1997). Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites. Protein Eng. 10, 1-6. doi: 10.1093/protein/10.1.1
-
(1997)
Protein Eng.
, vol.10
, pp. 1-6
-
-
Nielsen, H.1
Engelbrecht, J.2
Brunak, S.3
von Heijne, G.4
-
44
-
-
84860511529
-
Insight into trade off between wood decay and parasitism from the genome of a fungal forest pathogen
-
doi: 10.1111/j.1469-8137.2012.04128.x
-
Olson, Å., Aerts, A., Asiegbu, F., Belbahri, L., Bouzid, O., Broberg, A., et al. (2012). Insight into trade off between wood decay and parasitism from the genome of a fungal forest pathogen. New Phytol. 194, 1001-1013. doi: 10.1111/j.1469-8137.2012.04128.x
-
(2012)
New Phytol.
, vol.194
, pp. 1001-1013
-
-
Olson, A.1
Aerts, A.2
Asiegbu, F.3
Belbahri, L.4
Bouzid, O.5
Broberg, A.6
-
45
-
-
79954425432
-
Some biological features of Candida albicans mutants for genes coding fungal proteins containing the CFEM domain
-
doi: 10.1111/j.1567-1364.2010.00714.x
-
Perez, A., Ramage, G., Blanes, R., Murgui, A., Casanova, M., and Martinez, J. P. (2011). Some biological features of Candida albicans mutants for genes coding fungal proteins containing the CFEM domain. FEMS Yeast Res. 11, 273-284. doi: 10.1111/j.1567-1364.2010.00714.x
-
(2011)
FEMS Yeast Res.
, vol.11
, pp. 273-284
-
-
Perez, A.1
Ramage, G.2
Blanes, R.3
Murgui, A.4
Casanova, M.5
Martinez, J.P.6
-
46
-
-
80053345905
-
SignalP 4.0: Discriminating signal peptides from transmembrane regions
-
doi: 10.1038/nmeth.1701
-
Petersen, T., Brunak, S., Von Heijne, G., and Nielsen, H. (2011). SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat. Methods 8, 785-786. doi: 10.1038/nmeth.1701
-
(2011)
Nat. Methods
, vol.8
, pp. 785-786
-
-
Petersen, T.1
Brunak, S.2
Von Heijne, G.3
Nielsen, H.4
-
47
-
-
84864503262
-
Challenges and progress towards understanding the role of effectors in plant-fungal interactions
-
doi: 10.1016/j.pbi.2012.05.003
-
Rafiqi, M., Ellis, J., Ludowici, V., Hardham, A., and Dodds, P. (2012). Challenges and progress towards understanding the role of effectors in plant-fungal interactions. Curr. Opin. Plant Biol. 15, 477-482. doi: 10.1016/j.pbi.2012.05.003
-
(2012)
Curr. Opin. Plant Biol.
, vol.15
, pp. 477-482
-
-
Rafiqi, M.1
Ellis, J.2
Ludowici, V.3
Hardham, A.4
Dodds, P.5
-
48
-
-
78650481676
-
A Bayesian approach for fast and accurate gene tree reconstruction
-
doi: 10.1093/molbev/msq189
-
Rasmussen, M., and Kellis, M. (2011). A Bayesian approach for fast and accurate gene tree reconstruction. Mol. Biol. Evol. 28, 273-290. doi: 10.1093/molbev/msq189
-
(2011)
Mol. Biol. Evol.
, vol.28
, pp. 273-290
-
-
Rasmussen, M.1
Kellis, M.2
-
49
-
-
27744582427
-
Small proteins of plant-pathogenic fungi secreted during host colonization
-
doi: 10.1016/j.femsle.2005.09.014
-
Rep, M. (2005). Small proteins of plant-pathogenic fungi secreted during host colonization. FEMS Microbiol. Lett. 253, 19-27. doi: 10.1016/j.femsle.2005.09.014
-
(2005)
FEMS Microbiol. Lett.
, vol.253
, pp. 19-27
-
-
Rep, M.1
-
50
-
-
84863709162
-
Large-scale gene disruption in Magnaporthe oryzae identifies MC69, a secreted protein required for infection by monocot and dicot fungal pathogens
-
doi: 10.1371/journal.ppat.1002711
-
Saitoh, H., Fujisawa, S., Mitsuoka, C., Ito, A., Hirabuchi, A., Ikeda, K., et al. (2012). Large-scale gene disruption in Magnaporthe oryzae identifies MC69, a secreted protein required for infection by monocot and dicot fungal pathogens. PLoS Pathog. 8:e1002711. doi: 10.1371/journal.ppat.1002711
-
(2012)
PLoS Pathog.
, vol.8
-
-
Saitoh, H.1
Fujisawa, S.2
Mitsuoka, C.3
Ito, A.4
Hirabuchi, A.5
Ikeda, K.6
-
51
-
-
84855424171
-
Using hierarchical clustering of secreted protein families to classify and rank candidate effectors of rust fungi
-
doi: 10.1371/journal.pone.0029847
-
Saunders, D. G., Win, J., Cano, L. M., Szabo, L. J., Kamoun, S., and Raffaele, S. (2012). Using hierarchical clustering of secreted protein families to classify and rank candidate effectors of rust fungi. PLoS ONE 7:e29847. doi: 10.1371/journal.pone.0029847
-
(2012)
PLoS ONE
, vol.7
-
-
Saunders, D.G.1
Win, J.2
Cano, L.M.3
Szabo, L.J.4
Kamoun, S.5
Raffaele, S.6
-
52
-
-
84864519955
-
The genomics of obligate (and nonobligate) biotrophs
-
doi: 10.1146/annurev-phyto-081211-173024
-
Spanu, P. D. (2012). The genomics of obligate (and nonobligate) biotrophs. Annu. Rev. Phytopathol. 50, 91-109. doi: 10.1146/annurev-phyto-081211-173024
-
(2012)
Annu. Rev. Phytopathol.
, vol.50
, pp. 91-109
-
-
Spanu, P.D.1
-
53
-
-
27744546445
-
RAxML-III: A program for sequential, parallel and distributed inference of large phylogenetic trees
-
doi: 10.1093/bioinformatics/bti191
-
Stamatakis, A., Ludwig, T., and Meier, H. (2005). RAxML-III: a program for sequential, parallel and distributed inference of large phylogenetic trees. Concurr. Comput. Pract. Exp. 17, 1705-1723. doi: 10.1093/bioinformatics/bti191
-
(2005)
Concurr. Comput. Pract. Exp.
, vol.17
, pp. 1705-1723
-
-
Stamatakis, A.1
Ludwig, T.2
Meier, H.3
-
54
-
-
67649550674
-
Fungal effector proteins
-
doi: 10.1146/annurev.phyto.112408.132637
-
Stergiopoulos, I., and de Wit, P. (2009). Fungal effector proteins. Annu. Rev. Phytopathol. 47, 233-263. doi: 10.1146/annurev.phyto.112408.132637
-
(2009)
Annu. Rev. Phytopathol.
, vol.47
, pp. 233-263
-
-
Stergiopoulos, I.1
de Wit, P.2
-
55
-
-
84859423134
-
Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation
-
doi: 10.1111/j.1461-0248.2012.01749.x
-
Thrall, P., Laine, A., Ravensdal, M., Nemri, A., Dodds, P., Barrett, L., et al. (2012). Rapid genetic change underpins antagonistic coevolution in a natural host-pathogen metapopulation. Ecol. Lett. 15, 425-435. doi: 10.1111/j.1461-0248.2012.01749.x
-
(2012)
Ecol. Lett.
, vol.15
, pp. 425-435
-
-
Thrall, P.1
Laine, A.2
Ravensdal, M.3
Nemri, A.4
Dodds, P.5
Barrett, L.6
-
56
-
-
0028013536
-
The structure and function of fungal laccases
-
doi: 10.1099/13500872-140-1-19
-
Thurston, C. (1994). The structure and function of fungal laccases. Microbiol 140, 19-26. doi: 10.1099/13500872-140-1-19
-
(1994)
Microbiol
, vol.140
, pp. 19-26
-
-
Thurston, C.1
-
57
-
-
84896547853
-
Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae
-
doi: 10.1111/nph.12653
-
Toome, M., Ohm, R. A., Riley, R. W., James, T. Y., Lazarus, K. L., Henrissat, B., et al. (2014). Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae. New Phytol. 202, 554-564. doi: 10.1111/nph.12653
-
(2014)
New Phytol.
, vol.202
, pp. 554-564
-
-
Toome, M.1
Ohm, R.A.2
Riley, R.W.3
James, T.Y.4
Lazarus, K.L.5
Henrissat, B.6
-
58
-
-
33748329373
-
Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis
-
doi: 10.1126/science.1128796
-
Tyler, B., Tripathy, S., Zhang, X., Dehal, P., Jiang, R., Aerts, A., et al. (2006). Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis. Science 313, 1261-1266. doi: 10.1126/science.1128796
-
(2006)
Science
, vol.313
, pp. 1261-1266
-
-
Tyler, B.1
Tripathy, S.2
Zhang, X.3
Dehal, P.4
Jiang, R.5
Aerts, A.6
-
59
-
-
79953758198
-
Nutrient uptake in rust fungi: How sweet is parasitic life?
-
doi: 10.1007/s10681-011-0358-5
-
Voegele, R., and Mendgen, K. (2011). Nutrient uptake in rust fungi: how sweet is parasitic life? Euphytica 179, 41-55. doi: 10.1007/s10681-011-0358-5
-
(2011)
Euphytica
, vol.179
, pp. 41-55
-
-
Voegele, R.1
Mendgen, K.2
-
60
-
-
0031898091
-
Phylogenetic relationships among the pine stem rust fungi (Cronartium and Peridermium spp.)
-
doi: 10.2307/3761300
-
Vogler, D., and Bruns, T. (1998). Phylogenetic relationships among the pine stem rust fungi (Cronartium and Peridermium spp.). Mycologia 90, 244-257. doi: 10.2307/3761300
-
(1998)
Mycologia
, vol.90
, pp. 244-257
-
-
Vogler, D.1
Bruns, T.2
-
61
-
-
84871822882
-
TreeFix: Statistically informed gene tree error correction using species trees
-
doi: 10.1093/sysbio/sys076
-
Wu, Y., Rasmussen, M., Bansal, M., and Kellis, M. (2013). TreeFix: statistically informed gene tree error correction using species trees. Syst. Biol. 62, 110-120. doi: 10.1093/sysbio/sys076
-
(2013)
Syst. Biol.
, vol.62
, pp. 110-120
-
-
Wu, Y.1
Rasmussen, M.2
Bansal, M.3
Kellis, M.4
-
62
-
-
36749090098
-
Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens
-
doi: 10.1073/pnas.0706756104
-
Xu, J., Saunders, C. W., Hu, P., Grant, R. A., Boekhout, T., Kuramae, E. E., et al. (2007). Dandruff-associated Malassezia genomes reveal convergent and divergent virulence traits shared with plant and human fungal pathogens. Proc. Natl. Acad. Sci. U.S.A. 104, 18730-18735. doi: 10.1073/pnas.0706756104
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 18730-18735
-
-
Xu, J.1
Saunders, C.W.2
Hu, P.3
Grant, R.A.4
Boekhout, T.5
Kuramae, E.E.6
-
63
-
-
4644240769
-
Role of laccase in the biology and virulence of Cryptococcus neoformans
-
doi: 10.1016/j.femsyr.2004.04.004
-
Zhu, X., and Williamson, P. (2004). Role of laccase in the biology and virulence of Cryptococcus neoformans. FEMS Yeast Res. 5, 1-10. doi: 10.1016/j.femsyr.2004.04.004
-
(2004)
FEMS Yeast Res.
, vol.5
, pp. 1-10
-
-
Zhu, X.1
Williamson, P.2
|