메뉴 건너뛰기




Volumn 202, Issue 2, 2014, Pages 554-564

Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae

Author keywords

Biotrophic fungi; CAZy; Fungal genomics; Mixiomycetes; Osmunda spp.; Sporogenesis

Indexed keywords

FERN; FUNGUS; GENOME; GENOMICS; NUTRITIONAL STATUS; PATHOGENICITY; REPRODUCTIVE BIOLOGY; SEXUAL REPRODUCTION;

EID: 84896547853     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/nph.12653     Document Type: Article
Times cited : (48)

References (68)
  • 7
    • 80052327127 scopus 로고    scopus 로고
    • Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust
    • Cantu D, Govindarajulu M, Kozik A, Wang M, Chen X, Kojima KK, Jurka J, Michelmore RW, Dubcovsky J. 2011. Next generation sequencing provides rapid access to the genome of Puccinia striiformis f. sp. tritici, the causal agent of wheat stripe rust. PLoS ONE 6: e24230.
    • (2011) PLoS ONE , vol.6
    • Cantu, D.1    Govindarajulu, M.2    Kozik, A.3    Wang, M.4    Chen, X.5    Kojima, K.K.6    Jurka, J.7    Michelmore, R.W.8    Dubcovsky, J.9
  • 8
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J. 2000. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution 17: 540-552.
    • (2000) Molecular Biology and Evolution , vol.17 , pp. 540-552
    • Castresana, J.1
  • 11
    • 80052141955 scopus 로고    scopus 로고
    • Evidence for maintenance of sex determinants but not of sexual stages in red yeasts, a group of early diverged basidiomycetes
    • Coelho MA, Gonçalves P, Sampaio JP. 2011. Evidence for maintenance of sex determinants but not of sexual stages in red yeasts, a group of early diverged basidiomycetes. BMC Evolutionary Biology 11: 249.
    • (2011) BMC Evolutionary Biology , vol.11 , pp. 249
    • Coelho, M.A.1    Gonçalves, P.2    Sampaio, J.P.3
  • 12
    • 46949083482 scopus 로고    scopus 로고
    • Identification of mating type genes in the bipolar basidiomycetous yeast Rhodosporidium toruloides: first insight into the MAT locus structure of the Sporidiobolales
    • Coelho MA, Rosa A, Rodrigues N, Fonseca Á, Gonçalves P. 2008. Identification of mating type genes in the bipolar basidiomycetous yeast Rhodosporidium toruloides: first insight into the MAT locus structure of the Sporidiobolales. Eukaryotic Cell 7: 1053-1061.
    • (2008) Eukaryotic Cell , vol.7 , pp. 1053-1061
    • Coelho, M.A.1    Rosa, A.2    Rodrigues, N.3    Fonseca, A.4    Gonçalves, P.5
  • 13
    • 77957360460 scopus 로고    scopus 로고
    • A deviation from the bipolar-tetrapolar mating paradigm in an early diverged basidiomycete
    • Coelho MA, Sampaio JP, Gonçalves P. 2010. A deviation from the bipolar-tetrapolar mating paradigm in an early diverged basidiomycete. PLoS Genetics 6: e1001052.
    • (2010) PLoS Genetics , vol.6
    • Coelho, M.A.1    Sampaio, J.P.2    Gonçalves, P.3
  • 14
    • 84866410010 scopus 로고    scopus 로고
    • The comparison of phyllosphere fungal assemblages of European beech (Fagus sylvatica) varies significantly along an elevation gradient
    • Cordier T, Robin C, Capdevielle X, Fabreguettes O, Desprez-Loustau M-L, Vacher C. 2012. The comparison of phyllosphere fungal assemblages of European beech (Fagus sylvatica) varies significantly along an elevation gradient. New Phytologist 196: 510-519.
    • (2012) New Phytologist , vol.196 , pp. 510-519
    • Cordier, T.1    Robin, C.2    Capdevielle, X.3    Fabreguettes, O.4    Desprez-Loustau, M.-L.5    Vacher, C.6
  • 16
    • 33646856440 scopus 로고    scopus 로고
    • CAFE: a computational tool for the study of gene family evolution
    • De Bie T, Cristianini N, Demuth JP, Hahn MW. 2006. CAFE: a computational tool for the study of gene family evolution. Bioinformatics 22: 1269-1271.
    • (2006) Bioinformatics , vol.22 , pp. 1269-1271
    • De Bie, T.1    Cristianini, N.2    Demuth, J.P.3    Hahn, M.W.4
  • 19
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar RC. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research 32: 1792-1797.
    • (2004) Nucleic Acids Research , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 21
    • 0027580147 scopus 로고
    • ITS primers with enhanced specificity for basidiomycetes: application to the identification of mycorrhiza and rusts
    • Gardes M, Bruns TD. 1993. ITS primers with enhanced specificity for basidiomycetes: application to the identification of mycorrhiza and rusts. Molecular Ecology 2: 113-118.
    • (1993) Molecular Ecology , vol.2 , pp. 113-118
    • Gardes, M.1    Bruns, T.D.2
  • 24
  • 28
    • 33645217329 scopus 로고    scopus 로고
    • Evolution of the bipolar mating system of the mushroom Coprinellus disseminatus from its tetrapolar ancestors involves loss of mating-type-specific pheromone receptor function
    • James TY, Srivilai P, Kües U, Vilgalys R. 2006. Evolution of the bipolar mating system of the mushroom Coprinellus disseminatus from its tetrapolar ancestors involves loss of mating-type-specific pheromone receptor function. Genetics 172: 1877-1891.
    • (2006) Genetics , vol.172 , pp. 1877-1891
    • James, T.Y.1    Srivilai, P.2    Kües, U.3    Vilgalys, R.4
  • 29
    • 84864389068 scopus 로고    scopus 로고
    • Obligate biotroph parasitism: can we link genomes to lifestyles?
    • Kemen E, Jones JDG. 2012. Obligate biotroph parasitism: can we link genomes to lifestyles? Trends in Plant Science 17: 448-457.
    • (2012) Trends in Plant Science , vol.17 , pp. 448-457
    • Kemen, E.1    Jones, J.D.G.2
  • 30
    • 0009879334 scopus 로고
    • A new genus in the Protomycetaceae
    • Kramer CL. 1958. A new genus in the Protomycetaceae. Mycologia 50: 916-926.
    • (1958) Mycologia , vol.50 , pp. 916-926
    • Kramer, C.L.1
  • 32
    • 0035910270 scopus 로고    scopus 로고
    • Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes
    • Krogh A, Larsson B, von Heijne G, Sonnhammer EL. 2001. Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes. Journal of Molecular Biology 305: 567-580.
    • (2001) Journal of Molecular Biology , vol.305 , pp. 567-580
    • Krogh, A.1    Larsson, B.2    von Heijne, G.3    Sonnhammer, E.L.4
  • 34
    • 45949109669 scopus 로고    scopus 로고
    • MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences
    • Kumar S, Nei M, Dudley J, Tamura K. 2008. MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics 9: 299-306.
    • (2008) Briefings in Bioinformatics , vol.9 , pp. 299-306
    • Kumar, S.1    Nei, M.2    Dudley, J.3    Tamura, K.4
  • 35
    • 84867904219 scopus 로고    scopus 로고
    • Mating type in Basidiomycetes: unipolar, bipolar, and tetrapolar patterns of sexuality
    • Pöggeler S, Wöstemeyer J, eds., Berlin, Germany: Springer-Verlag
    • Kües U, James TY, Heitman J. 2011. Mating type in Basidiomycetes: unipolar, bipolar, and tetrapolar patterns of sexuality. In: Pöggeler S, Wöstemeyer J, eds. The Mycota, evolution of fungi and fungal-like organisms, vol. 14. Berlin, Germany: Springer-Verlag, 97-160.
    • (2011) The Mycota, evolution of fungi and fungal-like organisms , vol.14 , pp. 97-160
    • Kües, U.1    James, T.Y.2    Heitman, J.3
  • 36
    • 78751558547 scopus 로고    scopus 로고
    • Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gateway Computing Environments Workshop New Orleans, LA
    • Miller MA, Pfeiffer W, Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gateway Computing Environments Workshop New Orleans, LA, 1-8.
    • (2010) , pp. 1-8
    • Miller, M.A.1    Pfeiffer, W.2    Schwartz, T.3
  • 37
    • 0009861621 scopus 로고
    • Taphrina osmundae Nishida and Taphrina higginsii sp. nov
    • Mix AJ. 1947. Taphrina osmundae Nishida and Taphrina higginsii sp. nov. Mycologia 39: 71-76.
    • (1947) Mycologia , vol.39 , pp. 71-76
    • Mix, A.J.1
  • 38
    • 59149085273 scopus 로고    scopus 로고
    • Sexual reproduction and dimorphism in the pathogenic basidiomycetes
    • Morrow CA, Fraser JA. 2009. Sexual reproduction and dimorphism in the pathogenic basidiomycetes. FEMS Yeast Research 9: 161-177.
    • (2009) FEMS Yeast Research , vol.9 , pp. 161-177
    • Morrow, C.A.1    Fraser, J.A.2
  • 39
    • 0001588312 scopus 로고
    • Mixia osmundae: transfer from the Ascomycota to the Basidiomycota based on evidence from molecules and morphology
    • Nishida H, Ando K, Ando Y, Hirata A, Sugiyama J. 1995. Mixia osmundae: transfer from the Ascomycota to the Basidiomycota based on evidence from molecules and morphology. Canadian Journal of Botany 73(Suppl. 1): S660-S666.
    • (1995) Canadian Journal of Botany , vol.73 , Issue.SUPPL. 1
    • Nishida, H.1    Ando, K.2    Ando, Y.3    Hirata, A.4    Sugiyama, J.5
  • 41
    • 84884854337 scopus 로고    scopus 로고
    • Mixia C.L. Kramer emend. H. Nishida, K. Ando, Y. Ando, Hirata & Sugiyama (1995)
    • Kurtzman CP, Fell JW, Boekhout T, eds., London, UK: Elsevier
    • Nishida H, Robert V, Sugiyama J. 2011b. Mixia C.L. Kramer emend. H. Nishida, K. Ando, Y. Ando, Hirata & Sugiyama (1995). In: Kurtzman CP, Fell JW, Boekhout T, eds. The Yeasts, a taxonomic study, vol. 3. London, UK: Elsevier, 1499-1502.
    • (2011) The Yeasts, a taxonomic study , vol.3 , pp. 1499-1502
    • Nishida, H.1    Robert, V.2    Sugiyama, J.3
  • 42
    • 45249108856 scopus 로고
    • A contribution to the monograph of the parasitic Exoascaceae of Japan
    • Takahashi Y, ed. Rokumeikwan: Tokyo, Japan
    • Nishida T. 1911. A contribution to the monograph of the parasitic Exoascaceae of Japan. In: Takahashi Y, ed. Miyabe-Festschrift. Rokumeikwan: Tokyo, Japan, 157-212.
    • (1911) Miyabe-Festschrift , pp. 157-212
    • Nishida, T.1
  • 45
    • 34249848751 scopus 로고    scopus 로고
    • CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes
    • Parra G, Bradnam K, Korf I. 2007. CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes. Bioinformatics 23: 1061-1067.
    • (2007) Bioinformatics , vol.23 , pp. 1061-1067
    • Parra, G.1    Bradnam, K.2    Korf, I.3
  • 47
    • 84861182813 scopus 로고    scopus 로고
    • Genome evolution in filamentous plant pathogens: why bigger can be better
    • Raffaele S, Kamoun S. 2012. Genome evolution in filamentous plant pathogens: why bigger can be better. Nature Reviews 10: 417-430.
    • (2012) Nature Reviews , vol.10 , pp. 417-430
    • Raffaele, S.1    Kamoun, S.2
  • 48
    • 23344434987 scopus 로고    scopus 로고
    • The origin of multiple B mating specificities in Coprinus cinereus
    • Riquelme M, Challen MP, Casselton LA, Brown AJ. 2005. The origin of multiple B mating specificities in Coprinus cinereus. Genetics 170: 1105-1119.
    • (2005) Genetics , vol.170 , pp. 1105-1119
    • Riquelme, M.1    Challen, M.P.2    Casselton, L.A.3    Brown, A.J.4
  • 50
    • 0001987065 scopus 로고
    • A phylogeny of the Basidiomycetes
    • Savile DBO. 1955. A phylogeny of the Basidiomycetes. Canadian Journal of Botany 33: 60-104.
    • (1955) Canadian Journal of Botany , vol.33 , pp. 60-104
    • Savile, D.B.O.1
  • 51
    • 80052579993 scopus 로고    scopus 로고
    • A new lineage in Pucciniomycotina: class Tritirachiomycetes, order Tritirachiales, family Tritirachiaceae
    • Schell WA, Lee AG, Aime MC. 2011. A new lineage in Pucciniomycotina: class Tritirachiomycetes, order Tritirachiales, family Tritirachiaceae. Mycologia 103: 1331-1340.
    • (2011) Mycologia , vol.103 , pp. 1331-1340
    • Schell, W.A.1    Lee, A.G.2    Aime, M.C.3
  • 53
    • 79961171580 scopus 로고    scopus 로고
    • Pathogenomics of fungal plant parasites: what have we learnt about pathogenesis?
    • Schmidt SM, Panstruga R. 2011. Pathogenomics of fungal plant parasites: what have we learnt about pathogenesis? Current Opinion in Plant Biology 14: 392-399.
    • (2011) Current Opinion in Plant Biology , vol.14 , pp. 392-399
    • Schmidt, S.M.1    Panstruga, R.2
  • 56
    • 0038357675 scopus 로고    scopus 로고
    • The nutrient supply of pathogenic fungi; a fertile field for study
    • Solomon PS, Tan K-C, Oliver RP. 2003. The nutrient supply of pathogenic fungi; a fertile field for study. Molecular Plant Pathology 4: 203-210.
    • (2003) Molecular Plant Pathology , vol.4 , pp. 203-210
    • Solomon, P.S.1    Tan, K.-C.2    Oliver, R.P.3
  • 57
    • 84864519955 scopus 로고    scopus 로고
    • The genomics of obligate (and nonobligate) biotrophs
    • Spanu PD. 2012. The genomics of obligate (and nonobligate) biotrophs. Annual Review of Phytopathology 50: 91-109.
    • (2012) Annual Review of Phytopathology , vol.50 , pp. 91-109
    • Spanu, P.D.1
  • 58
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22: 2688-2690.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 59
    • 50249100595 scopus 로고    scopus 로고
    • A fast bootstrapping algorithm for the RAxML web-servers
    • Stamatakis A, Hoover P, Rougemont J. 2008. A fast bootstrapping algorithm for the RAxML web-servers. Systematic Biology 57: 758-771.
    • (2008) Systematic Biology , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 60
    • 0032535143 scopus 로고    scopus 로고
    • Relatedness, phylogeny, and evolution of the fungi
    • Sugiyama J. 1998. Relatedness, phylogeny, and evolution of the fungi. Mycoscience 39: 487-511.
    • (1998) Mycoscience , vol.39 , pp. 487-511
    • Sugiyama, J.1
  • 61
    • 45249106150 scopus 로고    scopus 로고
    • Identity of the plasmodial slime mold Phytoceratiomyxa osmundae and the lectotypification of Taphrina osmundae, the basionym of Mixia osmundae
    • Sugiyama J, Katumoto K. 2008. Identity of the plasmodial slime mold Phytoceratiomyxa osmundae and the lectotypification of Taphrina osmundae, the basionym of Mixia osmundae. Mycoscience 49: 192-198.
    • (2008) Mycoscience , vol.49 , pp. 192-198
    • Sugiyama, J.1    Katumoto, K.2
  • 62
    • 0002650636 scopus 로고    scopus 로고
    • Urediniomycetes
    • McLaughlin DJ, McLaughlin EG, Lemke PA, eds., vol. 7B. Berlin, Germany: Springer-Verlag
    • Swann EC, Frieders EM, McLaughlin DJ. 2001. Urediniomycetes. In: McLaughlin DJ, McLaughlin EG, Lemke PA, eds. The Mycota, systematics and evolution, vol. 7B. Berlin, Germany: Springer-Verlag, 37-56.
    • (2001) The Mycota, systematics and evolution , pp. 37-56
    • Swann, E.C.1    Frieders, E.M.2    McLaughlin, D.J.3
  • 63
    • 84881364761 scopus 로고    scopus 로고
    • Meredithblackwellia eburnea sp. et gen. nov., Kriegeriaceae fam. nov. and Kriegeriales ord. nov. - toward resolving higher-level classification in Microbotryomycetes
    • Toome M, Roberson RW, Aime MC. 2013. Meredithblackwellia eburnea sp. et gen. nov., Kriegeriaceae fam. nov. and Kriegeriales ord. nov. - toward resolving higher-level classification in Microbotryomycetes. Mycologia 105: 486-495.
    • (2013) Mycologia , vol.105 , pp. 486-495
    • Toome, M.1    Roberson, R.W.2    Aime, M.C.3
  • 66
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. San Diego, CA, USA: Academic Press
    • White TJ, Bruns TD, Lee S, Taylor JW. 1990. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis MA, Gelfand DH, Sninsky JJ, White TJ, eds. PCR protocols: a guide to methods and applications. San Diego, CA, USA: Academic Press, 315-322.
    • (1990) PCR protocols: a guide to methods and applications , pp. 315-322
    • White, T.J.1    Bruns, T.D.2    Lee, S.3    Taylor, J.W.4
  • 68
    • 0031253701 scopus 로고    scopus 로고
    • Bamboozled again! Inadvertent isolation of fungal rDNA sequences from bamboos (Poaceae: Bambusoideae)
    • Zhang W, Wendel JF, Clark LG. 1997. Bamboozled again! Inadvertent isolation of fungal rDNA sequences from bamboos (Poaceae: Bambusoideae). Molecular Phylogenetics and Evolution 8: 205-217.
    • (1997) Molecular Phylogenetics and Evolution , vol.8 , pp. 205-217
    • Zhang, W.1    Wendel, J.F.2    Clark, L.G.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.