-
1
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein J. Evolutionary trees from DNA sequences: A maximum likelihood approach. Journal of Molecular Evolution 1981; 17:368-376.
-
(1981)
Journal of Molecular Evolution
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
2
-
-
2542523843
-
ARB: A software environment for sequence data
-
Ludwig W et al. ARB: A software environment for sequence data. Nucleic Acids Research 2004; 32(4): 1363-1371.
-
(2004)
Nucleic Acids Research
, vol.32
, Issue.4
, pp. 1363-1371
-
-
Ludwig, W.1
-
5
-
-
85129670957
-
Parallel implementation and performance of fastDNAml-a program for maximum likelihood phylogenetic inference
-
CD-ROM
-
Stewart CA, Hart D, Berry DK, Olsen GJ, Wernert E, Fischer W. Parallel implementation and performance of fastDNAml-a program for maximum likelihood phylogenetic inference. Proceedings of 14th IEEE/ACM Supercomputing Conference (SC2001), 2001; (CD-ROM).
-
(2001)
Proceedings of 14th IEEE/ACM Supercomputing Conference (SC2001)
-
-
Stewart, C.A.1
Hart, D.2
Berry, D.K.3
Olsen, G.J.4
Wernert, E.5
Fischer, W.6
-
6
-
-
3142728258
-
-
[14 April]
-
PHYLIP homepage. http://evolution.genetics.washington.edu/phylip.html [14 April 2003].
-
(2003)
PHYLIP Homepage
-
-
-
7
-
-
0034849408
-
MRBAYES: Bayesian inference of phylogenetic trees
-
Huelsenbeck JP, Ronquist F. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 2001; 17(8):754-755.
-
(2001)
Bioinformatics
, vol.17
, Issue.8
, pp. 754-755
-
-
Huelsenbeck, J.P.1
Ronquist, F.2
-
8
-
-
27744447001
-
-
[30 May]
-
PAUP project site, http://paup.csit.fsu.edu [30 May 2003].
-
(2003)
-
-
-
9
-
-
0029836454
-
Quartet puzzling: A maximum-likelihood method for reconstructing tree topologies
-
Strimmer K, Haeseler Av. Quartet puzzling: A maximum-likelihood method for reconstructing tree topologies. Molecular Biology and Evolution 1996; 13:964-969.
-
(1996)
Molecular Biology and Evolution
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
Haeseler, Av.2
-
11
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematc Biology 2003; 52(5):696-704.
-
(2003)
Systematc Biology
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
12
-
-
0036679128
-
The metapopulation genetic algorithm: An efficient solution for the problem of large phylogeny estimation
-
Lemmon A, Milinkovitch M. The metapopulation genetic algorithm: An efficient solution for the problem of large phylogeny estimation. Proceedings of the National Academy of Sciences U.S.A. 2002; 99:10 516-10 521.
-
(2002)
Proceedings of the National Academy of Sciences U.S.A.
, vol.99
, pp. 10516-10521
-
-
Lemmon, A.1
Milinkovitch, M.2
-
13
-
-
0037379673
-
Phylogeny estimation: Traditional and Bayesian approaches
-
Holder MT, Lewis PO. Phylogeny estimation: Traditional and Bayesian approaches. Nature Reviews Genetics 2003; 4:275-284.
-
(2003)
Nature Reviews Genetics
, vol.4
, pp. 275-284
-
-
Holder, M.T.1
Lewis, P.O.2
-
15
-
-
0036790011
-
Genetic algorithms and parallel processing in maximum-likelihood phylogeny inference
-
Brauer MJ, Holder MT, Dries LA, Zwickl DJ, Lewis PO, Hillis DM. Genetic algorithms and parallel processing in maximum-likelihood phylogeny inference. Molecular Biology and Evolution 2002; 19:1717-1726.
-
(2002)
Molecular Biology and Evolution
, vol.19
, pp. 1717-1726
-
-
Brauer, M.J.1
Holder, M.T.2
Dries, L.A.3
Zwickl, D.J.4
Lewis, P.O.5
Hillis, D.M.6
-
16
-
-
0031149251
-
Links between maximum likelihood and maximum parsimony under a simple model of site substitution
-
Tuffley C, Steel M. Links between maximum likelihood and maximum parsimony under a simple model of site substitution. Bulletin of Mathematical Biology 1997; 3:581-607.
-
(1997)
Bulletin of Mathematical Biology
, vol.3
, pp. 581-607
-
-
Tuffley, C.1
Steel, M.2
-
17
-
-
27744496438
-
-
[20 July]
-
SETI@home project site, http://setiathome.ssl.berkeley.edu [20 July 2003].
-
(2003)
-
-
-
19
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa M, Kishino H, Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 1985; 22:160-174.
-
(1985)
Journal of Molecular Evolution
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, T.3
-
20
-
-
12444319280
-
-
(Information on tr/tv definitions) [11 November]
-
PAML Manual (Information on tr/tv definitions: page 20). http://bcr.musc.edu/manuals/pamlDOC.pdf [11 November 2003].
-
(2003)
PAML Manual
, pp. 20
-
-
-
21
-
-
27744576615
-
-
[12 October]
-
Regionales Rechenzentrum Erlangen: HPC services, http://www.rrze.uni- erlangen.de [12 October 2004].
-
(2004)
-
-
-
23
-
-
0024307824
-
Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data and the branching order in Homonoidae
-
Kishino H, Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data and the branching order in Homonoidae. Journal of Molecular Evolution 1989; 29:170-179.
-
(1989)
Journal of Molecular Evolution
, vol.29
, pp. 170-179
-
-
Kishino, H.1
Hasegawa, M.2
-
25
-
-
0036806280
-
Potential applications and pitfalls of Bayesian inference of phylogeny
-
Huelsenbeck JP, Larget B, Miller RE, Ronquist F. Potential applications and pitfalls of Bayesian inference of phylogeny. Systematic Biology 2002; 51(5):673-688.
-
(2002)
Systematic Biology
, vol.51
, Issue.5
, pp. 673-688
-
-
Huelsenbeck, J.P.1
Larget, B.2
Miller, R.E.3
Ronquist, F.4
-
27
-
-
0042695888
-
The challenge of constructing large phylogenetic trees
-
Sanderson MJ, Driskell AC. The challenge of constructing large phylogenetic trees. Trends in Plant Science 2003; 8(8):374-378.
-
(2003)
Trends in Plant Science
, vol.8
, Issue.8
, pp. 374-378
-
-
Sanderson, M.J.1
Driskell, A.C.2
-
28
-
-
2442489795
-
Performance of supertree methods on various data set decompositions
-
ch. 14, Bininda Edmonds ORP (ed.). Springer: Berlin
-
Roshan U, Moret BME, Warnow T, Williams TL. Performance of supertree methods on various data set decompositions. Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life (Computational Biology Series, vol. 4), ch. 14, Bininda Edmonds ORP (ed.). Springer: Berlin, 2004; 301-328.
-
(2004)
Phylogenetic Supertrees: Combining Information to Reveal the Tree of Life (Computational Biology Series)
, vol.4
, pp. 301-328
-
-
Roshan, U.1
Moret, B.M.E.2
Warnow, T.3
Williams, T.L.4
-
29
-
-
27744589511
-
-
[12 February]
-
Parallel fastDNAml download site. http://www.indiana.edu/~/rac/hpc/ fastDNAml [12 February 2003].
-
(2003)
-
-
-
30
-
-
0036205377
-
TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
-
Schmidt HA et al. TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 2002; 18:502-504.
-
(2002)
Bioinformatics
, vol.18
, pp. 502-504
-
-
Schmidt, H.A.1
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