A genomic map enriched for markers linked to Avr1 in Cronartium quercuum f.sp. fusiforme

Fungal Genetics and Biology

Volumn 48, Issue 3, 2011, Pages 266-274

  Kubisiak, Thomas L ^a   Anderson, Claire L ^b   Amerson, Henry V ^c   Smith, Jason A ^b   Davis, John M ^b   Nelson, C Dana ^a  

^a USDA FOREST SERVICE   (United States)

^b UNIVERSITY OF FLORIDA   (United States)

^c NORTH CAROLINA STATE UNIVERSITY   (United States)

Author keywords

AFLP; Avirulence gene; Cronartium quercuum f.sp. fusiforme; Fusiform rust; Gene for gene interaction; Linkage map; RAPD

Indexed keywords

DNA MARKER;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; AVR1 GENE; BASIDIOMYCETES; CRONARTIUM QUERCUUM; DNA EXTRACTION; FUNGAL GENE; FUNGUS ISOLATION; GENE FR1; GENE MAPPING; GENETIC LINKAGE; GENETIC MARKER; HETEROZYGOSITY; NONHUMAN; PINE; PRIORITY JOURNAL; PROGENY; RANDOM AMPLIFIED POLYMORPHIC DNA;

BASIDIOMYCOTA; CHROMOSOME MAPPING; CROSSES, GENETIC; GENES, FUNGAL; GENOME, FUNGAL; PINUS TAEDA; VIRULENCE;

CRONARTIUM QUERCUUM; PINUS TAEDA;

EID: 78751613313     PISSN: 10871845     EISSN: 10960937     Source Type: Journal    
DOI: 10.1016/j.fgb.2010.09.008     Document Type: Article

References (67)

1. Amerson H.V., Mott R.L. Technique for the axenic production and application of Cronartium fusiforme basidiospores. Phytopathology 1978, 68:673-675.
2. Amerson, H.V., Kubisiak, T.L., Garcia, S.A., Kuhlman, E.G., Nelson, C.D., McKeand, S.E., Mullin, T.J. Li, B., 2005. Interacting genes in the pine-fusiform rust forest pathosystem. In: Proceedings of the 28th Biennial Southern Forest Tree Improvement Conference, June 21-23, 2005. Raleigh, NC, US Department of Agriculture, Forest Service, p. 60. .
3. Anderson R.L., McClure J.P., Cost N.C., Uhler R.L. Estimating fusiform rust losses in five southeastern states. South. J. Appl. Forest. 1986, 10(4):237-240.
4. Anderson C.L., Kubisiak T.L., Nelson C.D., Smith J.A., Davis J.M. Genome size variation in the pine fusiform rust pathogen, Cronartium quercuum f.sp. fusiforme, as determined by flow cytometry. Mycologia 2010, 10.3852/10-040.
5. Boehm E.W.A., Bushnell W.R. An ultrastructural pachytene karyotype for Melampsora lini. Phytopathology 1992, 82:1212-1218.
6. Boehm E.W.A., Wenstrom J.C., McLaughlin D.J., Szabo L.J., Roelfs A.P., Bushnell W.R. An ultrastructural pachytene karyotype for Puccinia graminis f.sp. tritici. Can. J. Bot. 1992, 70:401-413.
7. Broggini, G.A.L., Bus, V.G.M., Parravicini, G., Kumar, S., Groenwold, R., Gessler, C., 2010. Genetic mapping of 14 avirulence genes in an EU-B04 × 1639 progeny of Venturia inaequalis. Fungal Gen. Biol. .
8. Burdine C.S., Kubisiak T.L., Johnson G.N., Nelson C.D. Fifty-two polymorphic microsatellite loci in the rust fungus, Cronartium quercuum f.sp. fusiforme. Mol. Ecol. Notes 2007, 7:1005-1008.
9. Cervera M.T., Gusmão J., Steenackers M., Peleman J., Storme V., Vanden Broeck A., Van Montagu M., Boerjan W. Identification of AFLP molecular markers for resistance against Melampsora larici-populina in Populus. Theor. Appl. Genet. 1996, 93:733-737.
10. Cubbage F., Pye J., Holmes T., Wagner J. An economic analysis of fusiform rust protection research. South. J. Appl. Forest. 2000, 24:77-85.
11. De Vos L., Myburg A.A., Wingfield M.J., Desjardins A.E., Gordon T.R., Wingfield B.D. Complete genetic linkage maps from an interspecific cross between Fusarium circinatum and Fusarium subglutinans. Fungal Gen. Biol. 2007, 44:701-714.
12. Dodds P.N., Lawrence G.J., Catanzariti A., Ayliffe M.A., Ellis J.G. The Melampsora lini AvrL567 avirulence genes are expressed in haustoria and their products are recognized inside plant cells. Plant Cell 2004, 16:755-768.
13. Doudrick R.L., Nelson C.D., Nance W.L. Genetic analysis of a single urediniospore culture of Cronartium quercuum f.sp. fusiforme, using random amplified polymorphic DNA markers. Mycologia 1993, 85:902-911.
14. Gale L.R., Bryant J.D., Calvo S., Giese H., Katan T., O'Donnell K., Suga H., Taga M., Usgaard T.R., Ward T.J., Kistler H.C. Chromosome complement of the fungal plant pathogen Fusarium graminearum based on genetic and physical mapping and cytological observations. Genetics 2005, 171:985-1001.
15. Geron C.D., Hafley L.H. Impact of fusiform rust on product yields of loblolly pine plantations. South. J. Appl. Forest. 1988, 12:226-231.
16. Harkins D.M., Johnson G.N., Skaggs P.A., Mix A.D., Dupper G.A., Devey M.E., Kinloch B.B., Neale D.B. Saturation mapping of a major gene for resistance to white pine blister rust in sugar pine. Theor. Appl. Genet. 1996, 97:1355-1360.
17. Jordan A.P., 1997. Fusiform Rust Disease Resistance and Genomic Mapping in Loblolly Pine. Master's Thesis, North Carolina State University, Raleigh, NC, 105 p.
18. Jorge V., Dowkiw A., Faivre-Rampant P., Bastien C. Genetic architecture of qualitative and quantitative Melampsora larici-populina leaf rust resistance in hybrid poplar: genetic mapping and QTL detection. New Phytol. 2005, 167:113-127.
19. Jurgenson J.E., Bowden R.L., Zeller K.A., Leslie J.F., Alexander N.J., Plattner R.D. A genetic map of Gibberella zeae (Fusarium graminearum). Genetics 2002, 160:1451-1460.
20. Kema G.H.J., Goodwin S.B., Hamza S., Verstappen E.C.P., Cavaletto J.R., Lee T.A.J.van der., Weerdt M.de., Bonants P.J.M., Waalwijk C. A combined amplified fragment length polymorphism and randomly amplified polymorphism DNA genetic linkage map of Mycosphaerella graminicola, the Septoria tritici leaf blotch pathogen of wheat. Genetics 2002, 161(4):1497-1505.
21. Kerrigan R.W., Royer J.C., Baller L.M., Kohli Y., Horgen P.A., Anderson J.B. Meiotic behavior and linkage relationships in the secondarily homothallic fungus Agaricus bisporus. Genetics 1993, 133:225-236.
22. Kinloch B.B., Dupper G.E. Genetic specificity in the white pine-blister rust pathosystem. Phytopathology 2002, 92:278-280.
23. Kinloch Jr., B.B., Walkinshaw, C.H., 1991. Resistance to fusiform rust in southern pines:how is it inherited? In: Hiratsuka et al. Y., (Ed.), Rusts of Pine. Proceedings IUFRO Rusts of Pine Working Party Conference. For. Can. Northwest. Reg. Info. Rep. NOR-X-317, Edmonton, Can, pp. 219-228.
24. Knighten, J.L., Young, C.H., McCartney, T.C., Anderson, R.L., 1988. Resistance Screening Center Procedures Manual: a Step-by-step Guide Used in the Operational Screening of Southern Pines for Resistance to Fusiform Rust, USDA Forest Service Forest Pest Management, Asheville, NC, pp 1-62.
25. Kubisiak T.L., Milgroom M.G. Markers linked to vegetative incompatibility (vic) genes and a region of high heterogeneity and reduced recombination near the mating type locus (MAT) in Cryphonectria parasitica. Fungal Genet. Biol. 2006, 43:453-463.
26. Kubisiak T.L., Roberds J.H., Spaine P.C., Doudrick R.L. Microsatellite DNA suggests regional structure in the fusiform rust fungus Cronartium quercuum f. sp fusiforme. Heredity 2004, 92:41-50.
27. Kubisiak T.L., Amerson H.V., Nelson C.D. Genetic interaction of the fusiform rust fungus with resistance gene Fr1 in loblolly pine. Phytopathology 2005, 95:376-380.
28. Kuhlman E.G. Interaction of virulent single-gall isolates of Cronartium quercuum f.sp. fusifiorme and resistant families of loblolly pine. Forest Sci. 1992, 38:641-651.
29. Kuhlman E.G., Amerson H.V., Jordan A.P., Pepper W.D. Inoculum density and expression of major gene resistance to fusiform rust disease in loblolly pine. Plant Disease 1997, 81:597-600.
30. Kuhn M.L., Gout L., Howlett B.J., Melayah D., Meyer M., Balesdent M.H., Rouxel T. Genetic linkage maps and genomic organization in Leptosphaeria maculans. European J. Plant Pathol. 2006, 114(1):17-31.
31. Lai Z., Faris J.D., Weiland J.J., Steffenson B.J., Friesen T.L. Genetic mapping of Pyrenophora teres f. teres genes conferring avirulence on barley. Fungal Genet. Biol. 2007, 44:323-329.
32. Larraya L.M., Perez G., Ritter E., Pisabarro A.G., Ramirez L. Genetic linkage map of the edible basidiomycete Pleurotus ostreatus. Appl. Environ. Microbiol. 2000, 66:5290-5300.
33. Li, H., 2003. Major gene Detection for Fusiform Rust Resistance Using Segregation Analysis and Linkage Analysis in Loblolly Pine. Ph.D. Thesis N.C. State Univ. Raleigh, NC, 130p.
34. Lincoln, S.E., Daly, M.J., Lander, E.S., 1992. Constructing Genetic Linkage Maps with Mapmaker 3.0: A Tutorial and Reference Manual. Whitehead Institute for Biomedical Research.
35. Lind M., Olson A., Stenlid J. An AFLP-markers based genetic linkage map of Heterobasidion annosum locating intersterility genes. Fungal Genet. Biol. 2005, 42:519-527.
36. Liu J.J., Ekramoddoullah A.K.M. Development of leucine-rich repeat polymorphism, amplified fragment length polymorphism, and sequence characterized amplified region markers to the Cronartium ribicola resistance gene Cr2 in western white pine (Pinus monticola). Tree Genet. Genomes 2008, 4:601-610.
37. Liu J.J., Ekramoddoullah A.K.M., Hunt R.S., Zamani A. Identification and characterization of random amplified polymorphic DNA markers linked to a major gene (Cr2) for resistance to Cronartium ribicola in Pinus monticola. Phytopathology 2006, 96:395-399.
38. Luna-Martínez F., Rodríguez-Guerra R., Victoria-Campos M., Simpson J. Development of a molecular genetic linkage map for Colletotrichum lindemuthianum and segregation analysis of two avirulence genes. Curr. Genet. 2007, 51:109-121.
39. Marra R.E., Huang J.C., Fung E., Nielsen K., Heitman J., Vilgalys R., Mitchell T.G. A genetic linkage map of Cryptococcus neoformans variety neoformans serotype D (Filobasidiella neoformans). Genetics 2004, 167:619-631.
40. Matthews F.R., Rowan J. An improved method for large-scale inoculations of pine and oak with Cronartium fusiforme. Plant Disease Rep. 1972, 56:931-934.
41. May K.J., Whisson S.C., Zwart R.S., Searle I.R., Irwin J.A.G., Maclean D.J., Carroll B.J., Drenth A. Inheritance and mapping of 11 avirulence genes in Phytophthora sojae. Fungal Genet. Biol. 2002, 37:1-12.
42. Michelmore R.W., Paran I., Kesseli R.V. Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. USA 1991, 88:9828-9832.
43. Myburg H., Morse A.M., Amerson H.V., Kubisiak T.L., Huber D., Osborne J.A., Garcia S.A., Nelson C.D., Davis J.M., Covert S.F., van Zyl L. Differential gene expression in loblolly pine (Pinus taeda L) challenged with the fusiform rust fungus, Cronartium quercuum f.sp. fusiforme. Physiol. Mol. Plant Pathol. 2006, 68:79-91.
44. Nelson, C.D., Doudrick, R.L., Nance, W.L., Hamaker, J.M., Capo, B., 1993. Specificity of host:pathogen genetic interaction for fusiform rust disease on slash pine. In: Proc. So. For. Tree Improv. Conf., 22nd. US Dep. Agric. For. Serv., Atlanta, GA, pp. 403-411.
45. Nelson, C.D., Josserand, S., Echt, C.S., Koppelman, J., 2007. Loblolly pine SSR markers for shortleaf pine genetics. In: Kabrick et al (Ed.), Shortleaf Pine Restoration and Ecology in the Ozarks: Proceedings of a Symposium. Gen. Tech. Rep. NRS-P-15. Newtown Square, PA, pp. 95-98.
46. Nelson C.D., Amerson H.V., Kubisiak T.L. Unravelling and managing fusiform rust disease: a model approach for coevolved forest tree pathosystems. Forest Pathol. 2010, 40:67-72.
47. Newcombe G., Bradshaw H.D., Chastagner G.A., Stettler R.F. A major gene for resistance to Melampsora medusae f.sp. deltoidae in a hybrid poplar pedigree. Phytopathology 1996, 86:87-94.
48. Nitta N., Farman M.L., Leong S.A. Genome organization of Magnaporthe grisea: integration of genetic maps, clustering of transposable elements and identification of genome duplications and rearrangements. Theor. Appl. Genet. 1997, 95(2):20-32.
49. Paran I., Michelmore R.W. Development of reliable PCR-based markers linked to downy mildew resistance genes in lettuce. Theor. Appl. Genet. 1993, 85:985-993.
50. Pedersen C., Rasmussen S.W., Giese H. A genetic map of Blumeria graminis based on functional genes, avirulence genes, and molecular markers. Fungal Genet. Biol. 2002, 35:235-246.
51. Pongam P., Osborn T.C., Williams P.H. Genetic analysis and identification of amplified fragment length polymorphism markers linked to the alm1 avirulence gene of Leptosphaeria maculans. Phytopathology 1998, 88:1068-1072.
52. Powers H.R., McClure J.P., Knight H.A., Dutrow G.F. Incidence and financial impacts of fusiform rust in the south. J. Forest. 1974, 72(7):398-401.
53. Remington D.L., O'Malley D.M. Evaluation of major genetic loci contributing to inbreeding depression for survival and early growth in a selfed family of Pinus taeda. Evolution 2000, 54(5):1580-1589.
54. Sicard D., Legg E., Brown S., Babu N.K., Ochoa O., Sudarshana P., Michelmore R.W. A genetic map of the lettuce downy mildew pathogen, Bremia lactucae, constructed from molecular markers and avirulence genes. Fungal Genet. Biol. 2003, 39:16-30.
55. Sweigard J.A., Carroll A.M., Kang S., Farrall L., Chumley F.G., Valent B. Identification, cloning, and characterization of PWL2, a gene for host species specificity in the rice blast fungus. Plant Cell 1995, 7:1221-1233.
56. Taberlet P., Gielly L., Patou G., Bouvet G. Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol. Biol. 1991, 17:1105-1109.
57. Tabor G.M., Kubisiak T.L., Klopfenstein N.B., Hall R.B., McNabb H.S. Bulked segregant analysis identifies molecular markers linked to Melampsora medusae resistance in Populus deltoides. Phytopathology 2000, 90:1039-1042.
58. Van der Lee T., Testa A., Robold A., van't Klooster J., Govers F. High-density genetic linkage maps of Phytophthora infestans reveal trisomic progeny and chromosomal rearrangements. Genetics 2004, 167:1643-1661.
59. Villar M., Lefevre F., Bradshaw H.D., du-Cros E.T. Molecular genetics of rust resistance in poplars (Melampsora larici-populina Kleb/Populus sp.) by bulked segregant analysis in a 2×2 factorial mating design. Genetics 1996, 143:531-536.
60. Voorrips R.E. MapChart: software for the graphical presentation of linkage maps and QTLs. J. Hered. 2002, 93:77-78.
61. Vos P., Hogers R., Bleeker M., Reijans M., van de Lee T., Hornes M., Frijters A., Pot J., Peleman J., Kuiper M. AFLP: a new technique for DNA fingerprinting. Nucl. Acids Res. 1995, 23(21):4407-4414.
62. Whisson S.C., Drenth A., Maclean D.J., Irwin J.A.G. Phytophthora sojae avirulence genes, RAPD, and RFLP markers used to construct a detailed genetic linkage map. Mol. Plant-Microbe Interact. 1995, 8:988-995.
63. Wilcox P.L., Amerson H.V., Kuhlman E.G., Lui B.H., O'Malley D.M., Sederoff R. Detection of a major gene for resistance to fusiform rust disease in loblolly pine by genomic mapping. Proc. Natl. Acad. Sci. 1996, 93:3859-3864.
64. Xu J.R., Leslie J.F. A genetic map of Gibberella fujikuroi mating population A (Fusarium moniliforme). Genetics 1996, 143:175-189.
65. Yin T.M., Di Fazio S.P., Gunter L.E., Jawdy S.S., Boerjan W., Tuscan G.A. Genetic and physical mapping of Melampsora rust resistance genes in Populus and characterization of linkage disequilibrium and flanking genomic sequence. New Phytol. 2004, 164:95-105.
66. Zambino P.J., Kubelik A.R., Szabo L.J. Gene action and linkage of avirulence genes to DNA markers in the rust fungus Puccinia graminis. Phytopathology 2000, 90:819-826.
67. Zhong S., Steffenson B.J., Martinez J.P., Ciuffetti L.M. A molecular genetic map and electrophoretic karyotype of the plant pathogenic fungus Cochliobolus sativus. Mol. Plant-Microbe Interact. 2002, 15:481-492.