-
1
-
-
0015549345
-
Ribosome-membrane interaction. Nondestructive disassembly of rat liver rough microsomes into ribosomal and membranous components
-
Adelman MR, Sabatini DD, Blobel G (1973) Ribosome-membrane interaction. Nondestructive disassembly of rat liver rough microsomes into ribosomal and membranous components. J Cell Biol 56:206-229
-
(1973)
J Cell Biol
, vol.56
, pp. 206-229
-
-
Adelman, M.R.1
Sabatini, D.D.2
Blobel, G.3
-
2
-
-
0019531674
-
Segregation of specific classes of messenger RNA into free and membrane-bound polysomes
-
Adesnik M, Maschio F (1981) Segregation of specific classes of messenger RNA into free and membrane-bound polysomes. Eur J Biochem 114:271-284
-
(1981)
Eur J Biochem
, vol.114
, pp. 271-284
-
-
Adesnik, M.1
Maschio, F.2
-
3
-
-
0003880161
-
-
Garland, New York
-
Alberts B, Johnson A, Lewis J, Raff M, Roberts K, Walter P (eds) (2002) Molecular biology of the cell. Garland, New York
-
(2002)
Molecular Biology of the Cell
-
-
Alberts, B.1
Johnson, A.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Walter, P.6
-
4
-
-
10744227895
-
Secondary structure of two regions in expansion segments ES3 and ES6 with the potential of forming a tertiary interaction in eukaryotic 40S ribosomal subunits
-
DOI 10.1261/rna.5135204
-
Alkemar G, Nygard O (2004) Secondary structure of two regions in expansion segments ES3 and ES6 with the potential of forming a tertiary interaction in eukaryotic 40S ribosomal subunits. RNA 10:403-411 (Pubitemid 38241001)
-
(2004)
RNA
, vol.10
, Issue.3
, pp. 403-411
-
-
Alkemar, G.1
Nygard, O.2
-
5
-
-
78650546283
-
Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution
-
Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soding J, Westhof E, Wilson DN, Beckmann R (2010a) Cryo-EM structure and rRNA model of a translating eukaryotic 80S ribosome at 5.5-A resolution. Proc Natl Acad Sci USA 107:19748-19753
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 19748-19753
-
-
Armache, J.P.1
Jarasch, A.2
Anger, A.M.3
Villa, E.4
Becker, T.5
Bhushan, S.6
Jossinet, F.7
Habeck, M.8
Dindar, G.9
Franckenberg, S.10
Marquez, V.11
Mielke, T.12
Thomm, M.13
Berninghausen, O.14
Beatrix, B.15
Soding, J.16
Westhof, E.17
Wilson, D.N.18
Beckmann, R.19
-
6
-
-
78650532579
-
Localization of eukaryote-specific ribosomal proteins in a 5.5-A cryo-EM map of the 80S eukaryotic ribosome
-
Armache JP, Jarasch A, Anger AM, Villa E, Becker T, Bhushan S, Jossinet F, Habeck M, Dindar G, Franckenberg S, Marquez V, Mielke T, Thomm M, Berninghausen O, Beatrix B, Soding J, Westhof E, Wilson DN, Beckmann R (2010b) Localization of eukaryote-specific ribosomal proteins in a 5.5-A cryo-EM map of the 80S eukaryotic ribosome. Proc Natl Acad Sci USA 107:19754-19759
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 19754-19759
-
-
Armache, J.P.1
Jarasch, A.2
Anger, A.M.3
Villa, E.4
Becker, T.5
Bhushan, S.6
Jossinet, F.7
Habeck, M.8
Dindar, G.9
Franckenberg, S.10
Marquez, V.11
Mielke, T.12
Thomm, M.13
Berninghausen, O.14
Beatrix, B.15
Soding, J.16
Westhof, E.17
Wilson, D.N.18
Beckmann, R.19
-
7
-
-
84881331096
-
New twist to nuclear import: When two travel together
-
Bange G, Murat G, Sinning I, Hurt E, Kressler D (2013) New twist to nuclear import: when two travel together. Commun Integr Biol 6:e24792
-
(2013)
Commun Integr Biol
, vol.6
-
-
Bange, G.1
Murat, G.2
Sinning, I.3
Hurt, E.4
Kressler, D.5
-
8
-
-
0035798359
-
Architecture of the protein-conducting channel associated with the translating 80S ribosome
-
DOI 10.1016/S0092-8674(01)00541-4
-
Beckmann R, SpahnCM, EswarN,Helmers J, Penczek PA, SaliA, Frank J, Blobel G (2001) Architecture of the protein-conducting channel associated with the translating 80S ribosome. Cell 107:361-372 (Pubitemid 33049979)
-
(2001)
Cell
, vol.107
, Issue.3
, pp. 361-372
-
-
Beckmann, R.1
Spahn, C.M.T.2
Eswar, N.3
Helmers, J.4
Penczek, P.A.5
Sali, A.6
Frank, J.7
Blobel, G.8
-
9
-
-
83855162728
-
The structure of the eukaryotic ribosome at 3.0 A resolution
-
Ben-Shem A, Garreau de Loubresse N, Melnikov S, Jenner L, Yusupova G, Yusupov M (2011) The structure of the eukaryotic ribosome at 3.0 A resolution. Science 334:1524-1529
-
(2011)
Science
, vol.334
, pp. 1524-1529
-
-
Ben-Shem, A.1
Garreau De Loubresse, N.2
Melnikov, S.3
Jenner, L.4
Yusupova, G.5
Yusupov, M.6
-
10
-
-
0017371657
-
Post transcriptional regulation of ribosome accumulation during myoblast differentiation
-
Bowman LH, Emerson CP Jr (1977) Post-transcriptional regulation of ribosome accumulation during myoblast differentiation. Cell 10:587-596 (Pubitemid 8102703)
-
(1977)
Cell
, vol.10
, Issue.4
, pp. 587-596
-
-
Bowman, L.H.1
Emerson Jr., C.P.2
-
11
-
-
0036892660
-
Unusually expanded SSU ribosomal DNA of primary osmotrophic euglenids: Molecular evolution and phylogenetic inference
-
DOI 10.1007/s00239-002-2371-8
-
Busse I, Preisfeld A (2002) Unusually expanded SSU ribosomal DNA of primary osmotrophic euglenids: molecular evolution and phylogenetic inference. J Mol Evol 55:757-767 (Pubitemid 35387408)
-
(2002)
Journal of Molecular Evolution
, vol.55
, Issue.6
, pp. 757-767
-
-
Busse, I.1
Preisfeld, A.2
-
12
-
-
2942571539
-
The comparative RNA web (CRW) site: An online database of comparative sequence and structure information for ribosomal, intron, and other RNAs
-
Cannone JJ, Subramanian S, Schnare MN, Collett JR, D'Souza LM, Du Y, Feng B, Lin N, Madabusi LV, Muller KM, Pande N, Shang Z, Yu N, Gutell RR (2002) The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs. BMC Bioinform 3:2
-
(2002)
BMC Bioinform
, vol.3
, pp. 2
-
-
Cannone, J.J.1
Subramanian, S.2
Schnare, M.N.3
Collett, J.R.4
D'Souza, L.M.5
Du, Y.6
Feng, B.7
Lin, N.8
Madabusi, L.V.9
Muller, K.M.10
Pande, N.11
Shang, Z.12
Yu, N.13
Gutell, R.R.14
-
13
-
-
41549119061
-
Structure of the Mammalian 80S Ribosome at 8.7 A Resolution
-
DOI 10.1016/j.str.2008.01.007, PII S0969212608000543
-
Chandramouli P, Topf M, Menetret JF, Eswar N, Cannone JJ, Gutell RR, Sali A, Akey CW (2008) Structure of the mammalian 80S ribosome at 8.7 A resolution. Structure 16:535-548 (Pubitemid 351467748)
-
(2008)
Structure
, vol.16
, Issue.4
, pp. 535-548
-
-
Chandramouli, P.1
Topf, M.2
Menetret, J.-F.3
Eswar, N.4
Cannone, J.J.5
Gutell, R.R.6
Sali, A.7
Akey, C.W.8
-
14
-
-
0032898902
-
Protein folding in Escherichia coli: Role of 23S ribosomal RNA
-
DOI 10.1016/S0167-4838(98)00179-4, PII S0167483898001794
-
Chattopadhyay S, Pal S, Pal D, Sarkar D, Chandra S, Das Gupta C (1999) Protein folding in Escherichia coli : role of 23S ribosomal RNA. Biochim Biophys Acta 1429:293-298 (Pubitemid 29065393)
-
(1999)
Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology
, vol.1429
, Issue.2
, pp. 293-298
-
-
Chattopadhyay, S.1
Pal, S.2
Pal, D.3
Sarkar, D.4
Chandra, S.5
Das, G.C.6
-
15
-
-
84864319440
-
Mechanism of protein biosynthesis in mammalian mitochondria
-
Christian BE, Spremulli LL (2012) Mechanism of protein biosynthesis in mammalian mitochondria. Biochim Biophys Acta 1819:1035-1054
-
(2012)
Biochim Biophys Acta
, vol.1819
, pp. 1035-1054
-
-
Christian, B.E.1
Spremulli, L.L.2
-
16
-
-
75149174817
-
Analysis of interactions between ribosomal proteins and RNA structural motifs
-
Ciriello G, Gallina C, Guerra C (2010) Analysis of interactions between ribosomal proteins and RNA structural motifs. BMC Bioinform 11(Suppl 1):S41
-
(2010)
BMC Bioinform
, vol.11
, Issue.SUPPL. 1
-
-
Ciriello, G.1
Gallina, C.2
Guerra, C.3
-
17
-
-
0021759601
-
Xenopus laevis 28S ribosomal RNA: A secondary structure model and its evolutionary and functional implications
-
Clark CG, Tague BW, Ware VC, Gerbi SA (1984) Xenopus laevis 28S ribosomal RNA: a secondary structure model and its evolutionary and functional implications. Nucleic Acids Res 12:6197-6220
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 6197-6220
-
-
Clark, C.G.1
Tague, B.W.2
Ware, V.C.3
Gerbi, S.A.4
-
18
-
-
84861534927
-
p180 promotes the ribosome-independent localization of a subset of mRNA to the endoplasmic reticulum
-
Cui XA, Zhang H, Palazzo AF (2011) p180 promotes the ribosome-independent localization of a subset of mRNA to the endoplasmic reticulum. PLoS Biol 10:e1001336
-
(2011)
PLoS Biol
, vol.10
-
-
Cui, X.A.1
Zhang, H.2
Palazzo, A.F.3
-
19
-
-
0036384268
-
L22 ribosomal protein and effect of its mutation on ribosome resistance to erythromycin
-
Davydova N, Streltsov V, Wilce M, Liljas A, Garber M (2002) L22 ribosomal protein and effect of its mutation on ribosome resistance to erythromycin. J Mol Biol 322:635-644
-
(2002)
J Mol Biol
, vol.322
, pp. 635-644
-
-
Davydova, N.1
Streltsov, V.2
Wilce, M.3
Liljas, A.4
Garber, M.5
-
20
-
-
2942592340
-
The ribosome receptor, p180, interacts with kinesin heavy chain, KIF5B
-
DOI 10.1016/j.bbrc.2004.05.069, PII S0006291X04010617
-
Diefenbach RJ, Diefenbach E, Douglas MW, Cunningham AL (2004) The ribosome receptor, p180, interacts with kinesin heavy chain, KIF5B. Biochem Biophys Res Commun 319:987-992 (Pubitemid 38739417)
-
(2004)
Biochemical and Biophysical Research Communications
, vol.319
, Issue.3
, pp. 987-992
-
-
Diefenbach, R.J.1
Diefenbach, E.2
Douglas, M.W.3
Cunningham, A.L.4
-
21
-
-
33644687877
-
Crystal structure of the first KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.7 A
-
DOI 10.1074/jbc.M508183200
-
Du Z, Lee JK, Tjhen R, Li S, Pan H, Stroud RM, James TL (2005) Crystal structure of the first KH domain of human poly(C)-binding protein-2 in complex with a C-rich strand of human telomeric DNA at 1.7 A. J Biol Chem 280:38823-38830 (Pubitemid 43853785)
-
(2005)
Journal of Biological Chemistry
, vol.280
, Issue.46
, pp. 38823-38830
-
-
Du, Z.1
Lee, J.K.2
Tjhen, R.3
Li, S.4
Pan, H.5
Stroud, R.M.6
James, T.L.7
-
22
-
-
33847042739
-
Protein-RNA interactions: Structural analysis and functional classes
-
Ellis JJ, Broom M, Jones S (2007) Protein-RNA interactions: structural analysis and functional classes. Proteins 66:903-911
-
(2007)
Proteins
, vol.66
, pp. 903-911
-
-
Ellis, J.J.1
Broom, M.2
Jones, S.3
-
23
-
-
80052138512
-
GC-biased gene conversion impacts ribosomal DNA evolution in vertebrates, angiosperms, and other eukaryotes
-
Escobar JS, Glemin S, Galtier N (2011) GC-biased gene conversion impacts ribosomal DNA evolution in vertebrates, angiosperms, and other eukaryotes. Mol Biol Evol 28:2561-2575
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2561-2575
-
-
Escobar, J.S.1
Glemin, S.2
Galtier, N.3
-
24
-
-
0034885664
-
The polypeptide tunnel system in the ribosome and its gating in erythromycin resistance mutants of L4 and L22
-
DOI 10.1016/S1097-2765(01)00293-3
-
Gabashvili IS, Gregory ST, Valle M, Grassucci R, Worbs M, Wahl MC, Dahlberg AE, Frank J (2001) The polypeptide tunnel system in the ribosome and its gating in erythromycin resistance mutants of L4 and L22. Mol Cell 8:181-188 (Pubitemid 32772916)
-
(2001)
Molecular Cell
, vol.8
, Issue.1
, pp. 181-188
-
-
Gabashvili, I.S.1
Gregory, S.T.2
Valle, M.3
Grassucci, R.4
Worbs, M.5
Wahl, M.C.6
Dahlberg, A.E.7
Frank, J.8
-
25
-
-
84859270325
-
Cryo-EM structure of the archaeal 50S ribosomal subunit in complex with initiation factor 6 and implications for ribosome evolution
-
Greber BJ, Boehringer D, Godinic-Mikulcic V, Crnkovic A, Ibba M, Weygand-Durasevic I, Ban N (2012) Cryo-EM structure of the archaeal 50S ribosomal subunit in complex with initiation factor 6 and implications for ribosome evolution. J Mol Biol 418:145-160
-
(2012)
J Mol Biol
, vol.418
, pp. 145-160
-
-
Greber, B.J.1
Boehringer, D.2
Godinic-Mikulcic, V.3
Crnkovic, A.4
Ibba, M.5
Weygand-Durasevic, I.6
Ban, N.7
-
26
-
-
0028261409
-
Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
-
Gutell RR, Larsen N, Woese CR (1994) Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol Rev 58:10-26
-
(1994)
Microbiol Rev
, vol.58
, pp. 10-26
-
-
Gutell, R.R.1
Larsen, N.2
Woese, C.R.3
-
28
-
-
0021770476
-
The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes
-
Hassouna N, Michot B, Bachellerie JP (1984) The complete nucleotide sequence of mouse 28S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nucleic Acids Res 12:3563-3583
-
(1984)
Nucleic Acids Res
, vol.12
, pp. 3563-3583
-
-
Hassouna, N.1
Michot, B.2
Bachellerie, J.P.3
-
29
-
-
85041133119
-
Association of Escherichia coli ribosomes with the inner membrane requires the signal recognition particle receptor but is independent of the signal recognition particle
-
DOI 10.1073/pnas.080077197
-
Herskovits AA, Bibi E (2000) Association of Escherichia coli ribosomes with the inner membrane requires the signal recognition particle receptor but is independent of the signal recognition particle. Proc Natl Acad Sci USA 97:4621-4626 (Pubitemid 30238607)
-
(2000)
Proceedings of the National Academy of Sciences of the United States of America
, vol.97
, Issue.9
, pp. 4621-4626
-
-
Herskovits, A.A.1
Bibi, E.2
-
30
-
-
0028067224
-
Degradation of rRNA in Salmonella strains: A novel mechanism to regulate the concentrations of rRNA and ribosomes
-
Hsu D, Shih LM, Zee YC (1994) Degradation of rRNA in Salmonella strains: a novel mechanism to regulate the concentrations of rRNA and ribosomes. J Bacteriol 176:4761-4765 (Pubitemid 24237984)
-
(1994)
Journal of Bacteriology
, vol.176
, Issue.15
, pp. 4761-4765
-
-
Hsu, D.1
Shih, L.-M.2
Yuan, C.Z.3
-
31
-
-
0040251482
-
Importin beta, transportin, RanBP5 and RanBP7 mediate nuclear import of ribosomal proteins in mammalian cells
-
DOI 10.1093/emboj/17.15.4491
-
Jakel S, Gorlich D (1998) Importin beta, transportin, RanBP5 and RanBP7 mediate nuclear import of ribosomal proteins in mammalian cells. EMBO J 17:4491-4502 (Pubitemid 28362637)
-
(1998)
EMBO Journal
, vol.17
, Issue.15
, pp. 4491-4502
-
-
Jakel, S.1
Gorlich, D.2
-
32
-
-
84866634798
-
Ribosomal proteins L7 and L8 function in concert with six A(3) assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits
-
Jakovljevic J, Ohmayer U, Gamalinda M, Talkish J, Alexander L, Linnemann J, Milkereit P, Woolford JL Jr (2012) Ribosomal proteins L7 and L8 function in concert with six A(3) assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits. RNA 18:1805-1822
-
(2012)
RNA
, vol.18
, pp. 1805-1822
-
-
Jakovljevic, J.1
Ohmayer, U.2
Gamalinda, M.3
Talkish, J.4
Alexander, L.5
Linnemann, J.6
Milkereit, P.7
Woolford Jr., J.L.8
-
33
-
-
0031750818
-
Changes in ribosomal activity in Escherichia coli cells during prolonged culture in sea salts medium
-
Kalpaxis DL, Karahalios P, Papapetropoulou M (1998) Changes in ribosomal activity of Escherichia coli cells during prolonged culture in sea salts medium. J Bacteriol 180:3114-3119 (Pubitemid 28285024)
-
(1998)
Journal of Bacteriology
, vol.180
, Issue.12
, pp. 3114-3119
-
-
Kalpaxis, D.L.1
Karahalios, P.2
Papapetropoulou, M.3
-
34
-
-
81555219350
-
Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6
-
Klinge S, Voigts-Hoffmann F, Leibundgut M, Arpagaus S, Ban N (2011) Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6. Science 334:941-948
-
(2011)
Science
, vol.334
, pp. 941-948
-
-
Klinge, S.1
Voigts-Hoffmann, F.2
Leibundgut, M.3
Arpagaus, S.4
Ban, N.5
-
35
-
-
0344678999
-
Characterization and mapping of mitochondrial ribosomal RNA and mitochondrial DNA in Drosophila melanogaster
-
Klukas CK, Dawid IB (1976) Characterization and mapping of mitochondrial ribosomal RNA and mitochondrial DNA in Drosophila melanogaster. Cell 9:615-625
-
(1976)
Cell
, vol.9
, pp. 615-625
-
-
Klukas, C.K.1
Dawid, I.B.2
-
36
-
-
80455178839
-
Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide-protein complexes
-
Kondo J, Westhof E (2011) Classification of pseudo pairs between nucleotide bases and amino acids by analysis of nucleotide-protein complexes. Nucleic Acids Res 39:8628-8637
-
(2011)
Nucleic Acids Res
, vol.39
, pp. 8628-8637
-
-
Kondo, J.1
Westhof, E.2
-
37
-
-
34249096783
-
Intranucleolar sites of ribosome biogenesis defined by the localization of early binding ribosomal proteins
-
DOI 10.1083/jcb.200612048
-
Kruger T, Zentgraf H, Scheer U (2007) Intranucleolar sites of ribosome biogenesis defined by the localization of early binding ribosomal proteins. J Cell Biol 177:573-578 (Pubitemid 46799829)
-
(2007)
Journal of Cell Biology
, vol.177
, Issue.4
, pp. 573-578
-
-
Kruger, T.1
Zentgraf, H.2
Scheer, U.3
-
38
-
-
0017710194
-
Release of poly A(+) messenger RNA from rat liver rough microsomes upon disassembly of bound polysomes
-
DOI 10.1083/jcb.74.2.414
-
Kruppa J, Sabatini DD (1977) Release of poly A(+) messenger RNA from rat liver rough microsomes upon disassembly of bound polysomes. J Cell Biol 74:414-427 (Pubitemid 8153979)
-
(1977)
Journal of Cell Biology
, vol.74
, Issue.2
, pp. 414-427
-
-
Kruppa, J.1
Sabatini, D.D.2
-
39
-
-
79953737877
-
The bacterial SRP receptor, SecA and the ribosome use overlapping binding sites on the SecY translocon
-
Kuhn P, Weiche B, Sturm L, Sommer E, Drepper F, Warscheid B, Sourjik V, Koch HG (2011) The bacterial SRP receptor, SecA and the ribosome use overlapping binding sites on the SecY translocon. Traffic 12:563-578
-
(2011)
Traffic
, vol.12
, pp. 563-578
-
-
Kuhn, P.1
Weiche, B.2
Sturm, L.3
Sommer, E.4
Drepper, F.5
Warscheid, B.6
Sourjik, V.7
Koch, H.G.8
-
40
-
-
0031893927
-
The phylogenetic potential of entire 26S rDNA sequences in plants
-
Kuzoff RK, Sweere JA, Soltis DE, Soltis PS, Zimmer EA (1998) The phylogenetic potential of entire 26S rDNA sequences in plants. Mol Biol Evol 15:251-263 (Pubitemid 28113682)
-
(1998)
Molecular Biology and Evolution
, vol.15
, Issue.3
, pp. 251-263
-
-
Kuzoff, R.K.1
Sweere, J.A.2
Soltis, D.E.3
Soltis, P.S.4
Zimmer, E.A.5
-
41
-
-
0020475449
-
A simple method for displaying the hydropathic character of a protein
-
Kyte J, Doolittle RF (1982) A simple method for displaying the hydropathic character of a protein. J Mol Biol 157:105-132
-
(1982)
J Mol Biol
, vol.157
, pp. 105-132
-
-
Kyte, J.1
Doolittle, R.F.2
-
42
-
-
0016760859
-
Direct association of messenger RNA with microsomal membranes in human diploid fibroblasts
-
Lande MA, Adesnik M, Sumida M, Tashiro Y, Sabatini DD (1975) Direct association of messenger RNA with microsomal membranes in human diploid fibroblasts. J Cell Biol 65:513-528
-
(1975)
J Cell Biol
, vol.65
, pp. 513-528
-
-
Lande, M.A.1
Adesnik, M.2
Sumida, M.3
Tashiro, Y.4
Sabatini, D.D.5
-
43
-
-
0035852965
-
Proposed secondary structure of eukaryote specific expansion segment 15 in 28S rRNA from mice, rats, and rabbits
-
DOI 10.1021/bi002286q
-
Larsson SL, Nygard O (2001) Proposed secondary structure of eukaryote specific expansion segment 15 in 28S rRNA from mice, rats, and rabbits. Biochemistry 40:3222-3231 (Pubitemid 32205367)
-
(2001)
Biochemistry
, vol.40
, Issue.10
, pp. 3222-3231
-
-
Larsson, S.L.1
Nygard, O.2
-
44
-
-
0027267021
-
The sequence of 28S ribosomal RNA varies within and between human cell lines
-
Leffers H, Andersen AH (1993) The sequence of 28S ribosomal RNA varies within and between human cell lines. Nucleic Acids Res 21:1449-1455 (Pubitemid 23154377)
-
(1993)
Nucleic Acids Research
, vol.21
, Issue.6
, pp. 1449-1455
-
-
Leffers, H.1
Andersen, A.H.2
-
45
-
-
33845407784
-
Reconstitution, Activities, and Structure of the Eukaryotic RNA Exosome
-
DOI 10.1016/j.cell.2006.10.037, PII S0092867406014279
-
Liu Q, Greimann JC, Lima CD (2006) Reconstitution, activities, and structure of the eukaryotic RNA exosome. Cell 127:1223-1237 (Pubitemid 44894519)
-
(2006)
Cell
, vol.127
, Issue.6
, pp. 1223-1237
-
-
Liu, Q.1
Greimann, J.C.2
Lima, C.D.3
-
46
-
-
0037452671
-
Isolation and characterization of Staufen-containing ribonucleoprotein particles from rat brain
-
DOI 10.1073/pnas.0334355100
-
Mallardo M, Deitinghoff A, Muller J, Goetze B, Macchi P, Peters C, Kiebler MA (2003) Isolation and characterization of Staufen-containing ribonucleoprotein particles from rat brain. Proc Natl Acad Sci USA 100:2100-2105 (Pubitemid 36254580)
-
(2003)
Proceedings of the National Academy of Sciences of the United States of America
, vol.100
, Issue.4
, pp. 2100-2105
-
-
Mallardo, M.1
Deitinghoff, A.2
Muller, J.3
Goetze, B.4
Macchi, P.5
Peters, C.6
Kiebler, M.A.7
-
47
-
-
46049116259
-
Single Copies of Sec61 and TRAP Associate with a Nontranslating Mammalian Ribosome
-
DOI 10.1016/j.str.2008.05.003, PII S0969212608001883
-
Menetret JF, Hegde RS, Aguiar M, Gygi SP, Park E, Rapoport TA, Akey CW (2008) Single copies of Sec61 and TRAP associate with a nontranslating mammalian ribosome. Structure 16:1126-1137 (Pubitemid 351899291)
-
(2008)
Structure
, vol.16
, Issue.7
, pp. 1126-1137
-
-
Menetret, J.-F.1
Hegde, R.S.2
Aguiar, M.3
Gygi, S.P.4
Park, E.5
Rapoport, T.A.6
Akey, C.W.7
-
48
-
-
0020480564
-
Sequence and secondary structure of mouse 28S rRNA 50 terminal domain. Organisation of the 5.8S-28S rRNA complex
-
Michot B, Bachellerie JP, Raynal F (1982) Sequence and secondary structure of mouse 28S rRNA 50 terminal domain. Organisation of the 5.8S-28S rRNA complex. Nucleic Acids Res 10:5273-5283
-
(1982)
Nucleic Acids Res
, vol.10
, pp. 5273-5283
-
-
Michot, B.1
Bachellerie, J.P.2
Raynal, F.3
-
49
-
-
63249107241
-
The ribosome returned
-
Moore PB (2009) The ribosome returned. J Biol 8:8
-
(2009)
J Biol
, vol.8
, pp. 8
-
-
Moore, P.B.1
-
50
-
-
0034794820
-
Yeast ribosomes bind to highly purified reconstituted Sec61p complex and to mammalian p180
-
DOI 10.1034/j.1600-0854.2001.21005.x
-
Morrow MW, Brodsky JL (2001) Yeast ribosomes bind to highly purified reconstituted Sec61p complex and to mammalian p180. Traffic 2:705-716 (Pubitemid 32904368)
-
(2001)
Traffic
, vol.2
, Issue.10
, pp. 705-716
-
-
Morrow, M.W.1
Brodsky, J.L.2
-
51
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
DOI 10.1126/science.289.5481.920
-
Nissen P, Hansen J, Ban N, Moore PB, Steitz TA (2000) The structural basis of ribosome activity in peptide bond synthesis. Science 289:920-930 (Pubitemid 30659940)
-
(2000)
Science
, vol.289
, Issue.5481
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
52
-
-
0029923819
-
Simplicity-correlated size growth of the nuclear 28S ribosomal RNA D3 expansion segment in the crustacean order Isopoda
-
DOI 10.1007/BF02198847
-
Nunn GB, Theisen BF, Christensen B, Arctander P (1996) Simplicity-correlated size growth of the nuclear 28S ribosomal RNA D3 expansion segment in the crustacean order Isopoda. J Mol Evol 42:211-223 (Pubitemid 26102488)
-
(1996)
Journal of Molecular Evolution
, vol.42
, Issue.2
, pp. 211-223
-
-
Nunn, G.B.1
Theisen, B.F.2
Christensen, B.3
Arctander, P.4
-
53
-
-
0018909468
-
Ribonucleic acid synthesis in embryonic chick muscle, rates of synthesis and half-lives of transfer and ribosomal RNA species
-
Nwagwu M, Nana M (1980) Ribonucleic acid synthesis in embryonic chick muscle, rates of synthesis and half-lives of transfer and ribosomal RNA species. J Embryol Exp Morphol 56:253-267 (Pubitemid 10135590)
-
(1980)
Journal of Embryology and Experimental Morphology
, vol.56
, pp. 253-267
-
-
Nwagwu, M.1
Nana, M.2
-
54
-
-
0037020098
-
Identification of mRNA/protein (mRNP) complexes containing Puralpha, mStaufen, fragile X protein, and myosin Va and their association with rough endoplasmic reticulum equipped with a kinesin motor
-
Ohashi S, Koike K, Omori A, Ichinose S, Ohara S, Kobayashi S, Sato TA, Anzai K (2002) Identification of mRNA/protein (mRNP) complexes containing Puralpha, mStaufen, fragile X protein, and myosin Va and their association with rough endoplasmic reticulum equipped with a kinesin motor. J Biol Chem 277:37804-37810
-
(2002)
J Biol Chem
, vol.277
, pp. 37804-37810
-
-
Ohashi, S.1
Koike, K.2
Omori, A.3
Ichinose, S.4
Ohara, S.5
Kobayashi, S.6
Sato, T.A.7
Anzai, K.8
-
56
-
-
24044470332
-
Angiogenesis and rhodopsin-like receptors: A role for N-terminal acidic residues?
-
DOI 10.1016/j.bbrc.2005.06.158, PII S0006291X0501377X
-
Parker SL, Parker MS, Sah R, Sallee F (2005) Angiogenesis and rhodopsin-like receptors: a role for N-terminal acidic residues? Biochem Biophys Res Commun 335:983-992 (Pubitemid 41215517)
-
(2005)
Biochemical and Biophysical Research Communications
, vol.335
, Issue.4
, pp. 983-992
-
-
Parker, S.L.1
Parker, M.S.2
Sah, R.3
Sallee, F.4
-
57
-
-
84872682327
-
On the segregation of protein ionic residues by charge type
-
Parker MS, Balasubramaniam A, Parker SL (2012) On the segregation of protein ionic residues by charge type. Amino Acids 43:2231-2247
-
(2012)
Amino Acids
, vol.43
, pp. 2231-2247
-
-
Parker, M.S.1
Balasubramaniam, A.2
Parker, S.L.3
-
58
-
-
0033990061
-
Flexible sequence similarity searching with the FASTA3 program package
-
Pearson WR (2000) Flexible sequence similarity searching with the FASTA3 program package. Methods Mol Biol 132:185-219
-
(2000)
Methods Mol Biol
, vol.132
, pp. 185-219
-
-
Pearson, W.R.1
-
59
-
-
0036146539
-
Ribosomal protein L12 uses a distinct nuclear import pathway mediated by importin 11
-
DOI 10.1128/MCB.22.4.1266-1275.2002
-
Plafker SM, Macara IG (2002) Ribosomal protein L12 uses a distinct nuclear import pathway mediated by importin 11. Mol Cell Biol 22:1266-1275 (Pubitemid 34094861)
-
(2002)
Molecular and Cellular Biology
, vol.22
, Issue.4
, pp. 1266-1275
-
-
Plafker, S.M.1
Macara, I.G.2
-
60
-
-
79953727280
-
The ribotoxin restrictocin recognizes its RNA substrate by selective engagement of active site residues
-
Plantinga MJ, Korennykh AV, Piccirilli JA, Correll CC (2011) The ribotoxin restrictocin recognizes its RNA substrate by selective engagement of active site residues. Biochemistry 50:3004-3013
-
(2011)
Biochemistry
, vol.50
, pp. 3004-3013
-
-
Plantinga, M.J.1
Korennykh, A.V.2
Piccirilli, J.A.3
Correll, C.C.4
-
61
-
-
0037189518
-
Endoplasmic reticulum-bound ribosomes reside in stable association with the translocon following termination of protein synthesis
-
DOI 10.1074/jbc.M202559200
-
Potter MD, Nicchitta CV (2002) Endoplasmic reticulum-bound ribosomes reside in stable association with the translocon following termination of protein synthesis. J Biol Chem 277:23314-23320 (Pubitemid 34952161)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.26
, pp. 23314-23320
-
-
Potter, M.D.1
Nicchitta, C.V.2
-
62
-
-
0034678632
-
Evolutionarily conserved binding of ribosomes to the translocation channel via the large ribosomal RNA
-
Prinz A, Behrens C, Rapoport TA, Hartmann E, Kalies KU (2000) Evolutionarily conserved binding of ribosomes to the translocation channel via the large ribosomal RNA. EMBO J 19:1900-1906 (Pubitemid 30204400)
-
(2000)
EMBO Journal
, vol.19
, Issue.8
, pp. 1900-1906
-
-
Prinz, A.1
Behrens, C.2
Rapoport, T.A.3
Hartmann, E.4
Kalies, K.-U.5
-
63
-
-
40449115740
-
Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum
-
DOI 10.1261/rna.721108
-
Pyhtila B, Zheng T, Lager PJ, Keene JD, Reedy MC, Nicchitta CV (2008) Signal sequence- and translation-independent mRNA localization to the endoplasmic reticulum. RNA 14:445-453 (Pubitemid 351397809)
-
(2008)
RNA
, vol.14
, Issue.3
, pp. 445-453
-
-
Pyhtila, B.1
Zheng, T.2
Lager, P.J.3
Keene, J.D.4
Reedy, M.C.5
Nicchitta, C.V.6
-
64
-
-
79959676389
-
The ribosome uses two active mechanisms to unwind messenger RNA during translation
-
Qu X, Wen JD, Lancaster L, Noller HF, Bustamante C, Tinoco I Jr (2011) The ribosome uses two active mechanisms to unwind messenger RNA during translation. Nature 475:118-121
-
(2011)
Nature
, vol.475
, pp. 118-121
-
-
Qu, X.1
Wen, J.D.2
Lancaster, L.3
Noller, H.F.4
Bustamante, C.5
Tinoco Jr., I.6
-
65
-
-
0030722506
-
A distinct nuclear import pathway used by ribosomal proteins
-
Rout MP, Blobel G, Aitchison JD (1997) A distinct nuclear import pathway used by ribosomal proteins. Cell 89:715-725 (Pubitemid 27516174)
-
(1997)
Cell
, vol.89
, Issue.5
, pp. 715-725
-
-
Rout, M.P.1
Blobel, G.2
Aitchison, J.D.3
-
66
-
-
85010245118
-
On the attachment of ribosomes to microsomal membranes
-
Sabatini DD, Tashiro Y, Palade GE (1966) On the attachment of ribosomes to microsomal membranes. J Mol Biol 19:503-524
-
(1966)
J Mol Biol
, vol.19
, pp. 503-524
-
-
Sabatini, D.D.1
Tashiro, Y.2
Palade, G.E.3
-
67
-
-
0019798272
-
Dual pathways for ribonucleic acid turnover in WI-38 but not in I-cell human diploid fibroblasts
-
Sameshima M, Liebhaber SA, Schlessinger D (1981) Dual pathways for ribonucleic acid turnover in WI-38 but not in I-cell human diploid fibroblasts. Mol Cell Biol 1:75-81 (Pubitemid 11119413)
-
(1981)
Molecular and Cellular Biology
, vol.1
, Issue.1
, pp. 75-81
-
-
Sameshima, M.1
Liebhaber, S.A.2
Schlessinger, D.3
-
68
-
-
84857530435
-
Structural diversity in bacterial ribosomes: Mycobacterial 70S ribosome structure reveals novel features
-
Shasmal M, Sengupta J (2012) Structural diversity in bacterial ribosomes: mycobacterial 70S ribosome structure reveals novel features. PLoS One 7:e31742
-
(2012)
PLoS One
, vol.7
-
-
Shasmal, M.1
Sengupta, J.2
-
69
-
-
38849095337
-
Sequence variation within the rRNA gene loci of 12 Drosophila species
-
DOI 10.1101/gr.6376807
-
Stage DE, Eickbush TH (2007) Sequence variation within the rRNA gene loci of 12 Drosophila species. Genome Res 17:1888-1897 (Pubitemid 351360011)
-
(2007)
Genome Research
, vol.17
, Issue.12
, pp. 1888-1897
-
-
Stage, D.E.1
Eickbush, T.H.2
-
70
-
-
28644450485
-
Stable ribosome binding to the endoplasmic reticulum enables compartment-specific regulation of mRNA translation
-
DOI 10.1091/mbc.E05-07-0685
-
Stephens SB, Dodd RD, Brewer JW, Lager PJ, Keene JD, Nicchitta CV (2005) Stable ribosome binding to the endoplasmic reticulum enables compartment-specific regulation of mRNA translation. Mol Biol Cell 16:5819-5831 (Pubitemid 41752229)
-
(2005)
Molecular Biology of the Cell
, vol.16
, Issue.12
, pp. 5819-5831
-
-
Stephens, S.B.1
Dodd, R.D.2
Brewer, J.W.3
Lager, P.J.4
Keene, J.D.5
Nicchitta, C.V.6
-
72
-
-
84875536742
-
The quantitative assessment of the role played by basic amino acid clusters in the nuclear uptake of human ribosomal protein L7
-
Tai LR, Chou CW, Lee IF, Kirby R, Lin A (2013) The quantitative assessment of the role played by basic amino acid clusters in the nuclear uptake of human ribosomal protein L7. Exp Cell Res 319:367-375
-
(2013)
Exp Cell Res
, vol.319
, pp. 367-375
-
-
Tai, L.R.1
Chou, C.W.2
Lee, I.F.3
Kirby, R.4
Lin, A.5
-
73
-
-
34547560560
-
RNABindR: A server for analyzing and predicting RNA-binding sites in proteins
-
Terribilini M, Sander JD, Lee JH, Zaback P, Jernigan RL, Honavar V, Dobbs D (2007) RNABindR: a server for analyzing and predicting RNA-binding sites in proteins. Nucleic Acids Res 35:W578-W584
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Terribilini, M.1
Sander, J.D.2
Lee, J.H.3
Zaback, P.4
Jernigan, R.L.5
Honavar, V.6
Dobbs, D.7
-
74
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD,HigginsDG,Gibson TJ (1994)CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680 (Pubitemid 24354800)
-
(1994)
Nucleic Acids Research
, vol.22
, Issue.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
75
-
-
0021106022
-
Ribosomal proteins cross-linked to 28-S and 18-S rRNA separated by sedimentation after ultraviolet irradiation of rat-liver ribosomes
-
Uchiumi T, Terao K, Ogata K (1983) Ribosomal proteins cross-linked to 28-S and 18-S rRNA separated by sedimentation after ultraviolet irradiation of rat-liver ribosomes. Eur J Biochem 132:495-499
-
(1983)
Eur J Biochem
, vol.132
, pp. 495-499
-
-
Uchiumi, T.1
Terao, K.2
Ogata, K.3
-
76
-
-
84860135774
-
Regulation of polysome assembly on the endoplasmic reticulum by a coiled-coil protein, p180
-
Ueno T, Kaneko K, Sata T, Hattori S, Ogawa-Goto K (2012) Regulation of polysome assembly on the endoplasmic reticulum by a coiled-coil protein, p180. Nucleic Acids Res 40:3006-3017
-
(2012)
Nucleic Acids Res
, vol.40
, pp. 3006-3017
-
-
Ueno, T.1
Kaneko, K.2
Sata, T.3
Hattori, S.4
Ogawa-Goto, K.5
-
77
-
-
0024603045
-
28 S ribosomal RNA in vertebrates. Locations of large-scale features revealed by electron microscopy in relation to other features of the sequences
-
Wakeman JA, Maden BE (1989) 28 S ribosomal RNA in vertebrates. Locations of large-scale features revealed by electron microscopy in relation to other features of the sequences. Biochem J 258:49-56 (Pubitemid 19062252)
-
(1989)
Biochemical Journal
, vol.258
, Issue.1
, pp. 49-56
-
-
Wakeman, J.A.1
Maden, E.H.2
-
78
-
-
33747828217
-
BindN: A web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences
-
DOI 10.1093/nar/gkl298
-
Wang L, Brown SJ (2006) BindN: a web-based tool for efficient prediction of DNA and RNA binding sites in amino acid sequences. Nucleic Acids Res 34:W243-W248 (Pubitemid 44529772)
-
(2006)
Nucleic Acids Research
, vol.34
, Issue.WEB. SERV. ISS.
-
-
Wang, L.1
Brown, S.J.2
-
79
-
-
0029054827
-
Functional characterization of the 180-kD ribosome receptor in vivo
-
Wanker EE, Sun Y, Savitz AJ, Meyer DI (1995) Functional characterization of the 180-kD ribosome receptor in vivo. J Cell Biol 130:29-39
-
(1995)
J Cell Biol
, vol.130
, pp. 29-39
-
-
Wanker, E.E.1
Sun, Y.2
Savitz, A.J.3
Meyer, D.I.4
-
80
-
-
0021112747
-
Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis
-
Ware VC, Tague BW, Clark CG, Gourse RL, Brand RC, Gerbi SA (1983) Sequence analysis of 28S ribosomal DNA from the amphibian Xenopus laevis. Nucleic Acids Res 11:7795-7817
-
(1983)
Nucleic Acids Res
, vol.11
, pp. 7795-7817
-
-
Ware, V.C.1
Tague, B.W.2
Clark, C.G.3
Gourse, R.L.4
Brand, R.C.5
Gerbi, S.A.6
-
81
-
-
0035451794
-
The once and future nanomachine
-
Whitesides GM (2001) The once and future nanomachine. Sci Am 285:78-83
-
(2001)
Sci Am
, vol.285
, pp. 78-83
-
-
Whitesides, G.M.1
-
82
-
-
69849114530
-
Classification and energetics of the base-phosphate interactions in RNA
-
Zirbel CL, Sponer JE, Sponer J, Stombaugh J, Leontis NB (2009) Classification and energetics of the base-phosphate interactions in RNA. Nucleic Acids Res 37:4898-4918
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 4898-4918
-
-
Zirbel, C.L.1
Sponer, J.E.2
Sponer, J.3
Stombaugh, J.4
Leontis, N.B.5
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