-
1
-
-
33845997473
-
Modeling the reactions of superoxide and myeloperoxidase in the neutrophil phagosome: implications for microbial killing
-
Winterbourn CC, Hampton MB, Livesey JH, Kettle AJ. 2006. Modeling the reactions of superoxide and myeloperoxidase in the neutrophil phagosome: implications for microbial killing. J. Biol. Chem. 281:39860-39869. http://dx.doi.org/10.1074/jbc.M605898200.
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 39860-39869
-
-
Winterbourn, C.C.1
Hampton, M.B.2
Livesey, J.H.3
Kettle, A.J.4
-
2
-
-
0024811787
-
Bacterial adaptation to oxidative stress: implications for pathogenesis and interaction with phagocytic cells
-
Hassett DJ, Cohen MS. 1989. Bacterial adaptation to oxidative stress: implications for pathogenesis and interaction with phagocytic cells. FASEB J. 3:2574-2582.
-
(1989)
FASEB J.
, vol.3
, pp. 2574-2582
-
-
Hassett, D.J.1
Cohen, M.S.2
-
3
-
-
33746601080
-
Staphyloxanthin plays a role in the fitness of Staphylococcus aureus and its ability to cope with oxidative stress
-
Clauditz A, Resch A, Wieland KP, Peschel A, Gotz F. 2006. Staphyloxanthin plays a role in the fitness of Staphylococcus aureus and its ability to cope with oxidative stress. Infect. Immun. 74:4950-4953. http://dx.doi.org/10.1128/IAI.00204-06.
-
(2006)
Infect. Immun.
, vol.74
, pp. 4950-4953
-
-
Clauditz, A.1
Resch, A.2
Wieland, K.P.3
Peschel, A.4
Gotz, F.5
-
4
-
-
0032489438
-
Coenzyme A disulfide reductase, the primary low molecular weight disulfide reductase from Staphylococcus aureus. Purification and characterization of the native enzyme
-
delCardayre SB, Stock KP, Newton GL, Fahey RC, Davies JE. 1998. Coenzyme A disulfide reductase, the primary low molecular weight disulfide reductase from Staphylococcus aureus. Purification and characterization of the native enzyme. J. Biol. Chem. 273:5744-5751.
-
(1998)
J. Biol. Chem.
, vol.273
, pp. 5744-5751
-
-
delCardayre, S.B.1
Stock, K.P.2
Newton, G.L.3
Fahey, R.C.4
Davies, J.E.5
-
5
-
-
0033118910
-
Oxidative stress
-
Storz G, Imlay JA. 1999. Oxidative stress. Curr. Opin. Microbiol. 2:188-194. http://dx.doi.org/10.1016/S1369-5274(99)80033-2.
-
(1999)
Curr. Opin. Microbiol.
, vol.2
, pp. 188-194
-
-
Storz, G.1
Imlay, J.A.2
-
6
-
-
33750230997
-
An oxidation-sensing mechanism is used by the global regulator MgrA in Staphylococcus aureus
-
Chen PR, Bae T, Williams WA, Duguid EM, Rice PA, Schneewind O, He C. 2006. An oxidation-sensing mechanism is used by the global regulator MgrA in Staphylococcus aureus. Nat. Chem. Biol. 2:591-595. http://dx.doi.org/10.1038/nchembio820.
-
(2006)
Nat. Chem. Biol.
, vol.2
, pp. 591-595
-
-
Chen, P.R.1
Bae, T.2
Williams, W.A.3
Duguid, E.M.4
Rice, P.A.5
Schneewind, O.6
He, C.7
-
7
-
-
0037076330
-
The OhrR repressor senses organic hydroperoxides by reversible formation of a cysteine-sulfenic acid derivative
-
Fuangthong M, Helmann JD. 2002. The OhrR repressor senses organic hydroperoxides by reversible formation of a cysteine-sulfenic acid derivative. Proc. Natl. Acad. Sci. U. S. A. 99:6690-6695. http://dx.doi.org/10.1073/pnas.102483199.
-
(2002)
Proc. Natl. Acad. Sci. U. S. A.
, vol.99
, pp. 6690-6695
-
-
Fuangthong, M.1
Helmann, J.D.2
-
8
-
-
72049090645
-
Staphylococcus aureus SarA is a regulatory protein responsive to redox and pH that can support bacteriophage lambda integrase-mediated excision/recombination
-
Fujimoto DF, Higginbotham RH, Sterba KM, Maleki SJ, Segall AM, Smeltzer MS, Hurlburt BK. 2009. Staphylococcus aureus SarA is a regulatory protein responsive to redox and pH that can support bacteriophage lambda integrase-mediated excision/recombination. Mol. Microbiol. 74: 1445-1458. http://dx.doi.org/10.1111/j.1365-2958.2009.06942.x.
-
(2009)
Mol. Microbiol.
, vol.74
, pp. 1445-1458
-
-
Fujimoto, D.F.1
Higginbotham, R.H.2
Sterba, K.M.3
Maleki, S.J.4
Segall, A.M.5
Smeltzer, M.S.6
Hurlburt, B.K.7
-
9
-
-
0029790760
-
SoxR, a [2Fe-2S] transcription factor, is active only in its oxidized form
-
Gaudu P, Weiss B. 1996. SoxR, a [2Fe-2S] transcription factor, is active only in its oxidized form. Proc. Natl. Acad. Sci. U. S. A. 93:10094-10098. http://dx.doi.org/10.1073/pnas.93.19.10094.
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 10094-10098
-
-
Gaudu, P.1
Weiss, B.2
-
10
-
-
58149105545
-
A new oxidative sensing and regulation pathway mediated by the MgrA homologue SarZ in Staphylococcus aureus
-
Chen PR, Nishida S, Poor CB, Cheng A, Bae T, Kuechenmeister L, Dunman PM, Missiakas D, He C. 2009. A new oxidative sensing and regulation pathway mediated by the MgrA homologue SarZ in Staphylococcus aureus. Mol. Microbiol. 71:198-211. http://dx.doi.org/10.1111/j.13652958.2008.06518.x.
-
(2009)
Mol. Microbiol.
, vol.71
, pp. 198-211
-
-
Chen, P.R.1
Nishida, S.2
Poor, C.B.3
Cheng, A.4
Bae, T.5
Kuechenmeister, L.6
Dunman, P.M.7
Missiakas, D.8
He, C.9
-
11
-
-
51649131425
-
The Pseudomonas aeruginosa multidrug efflux regulator MexR uses an oxidation-sensing mechanism
-
Chen H, Hu J, Chen PR, Lan L, Li Z, Hicks LM, Dinner AR, He C. 2008. The Pseudomonas aeruginosa multidrug efflux regulator MexR uses an oxidation-sensing mechanism. Proc. Natl. Acad. Sci. U. S. A. 105:13586-13591. http://dx.doi.org/10.1073/pnas.0803391105.
-
(2008)
Proc. Natl. Acad. Sci. U. S. A.
, vol.105
, pp. 13586-13591
-
-
Chen, H.1
Hu, J.2
Chen, P.R.3
Lan, L.4
Li, Z.5
Hicks, L.M.6
Dinner, A.R.7
He, C.8
-
12
-
-
84855667761
-
AirSR, a [2Fe-2S] cluster-containing two-component system, mediates global oxygen sensing and redox signaling in Staphylococcus aureus
-
Sun F, Ji Q, Jones MB, Deng X, Liang H, Frank B, Telser J, Peterson SN, Bae T, He C. 2012. AirSR, a [2Fe-2S] cluster-containing two-component system, mediates global oxygen sensing and redox signaling in Staphylococcus aureus. J. Am. Chem. Soc. 134:305-314. http://dx.doi.org/10.1021/ja2071835.
-
(2012)
J. Am. Chem. Soc.
, vol.134
, pp. 305-314
-
-
Sun, F.1
Ji, Q.2
Jones, M.B.3
Deng, X.4
Liang, H.5
Frank, B.6
Telser, J.7
Peterson, S.N.8
Bae, T.9
He, C.10
-
13
-
-
84861848835
-
Quorum-sensing agr mediates bacterial oxidation response via an intramolecular disulfide redox switch in the response regulator AgrA
-
Sun F, Liang H, Kong X, Xie S, Cho H, Deng X, Ji Q, Zhang H, Alvarez S, Hicks LM, Bae T, Luo C, Jiang H, He C. 2012. Quorum-sensing agr mediates bacterial oxidation response via an intramolecular disulfide redox switch in the response regulator AgrA. Proc. Natl. Acad. Sci. U. S. A. 109:9095-9100. http://dx.doi.org/10.1073/pnas.1200603109.
-
(2012)
Proc. Natl. Acad. Sci. U. S. A.
, vol.109
, pp. 9095-9100
-
-
Sun, F.1
Liang, H.2
Kong, X.3
Xie, S.4
Cho, H.5
Deng, X.6
Ji, Q.7
Zhang, H.8
Alvarez, S.9
Hicks, L.M.10
Bae, T.11
Luo, C.12
Jiang, H.13
He, C.14
-
14
-
-
84862285306
-
Staphylococcus aureus CymR is a new thiol-based oxidation-sensing regulator of stress resistance and oxidative response
-
Ji Q, Zhang L, Sun F, Deng X, Liang H, Bae T, He C. 2012. Staphylococcus aureus CymR is a new thiol-based oxidation-sensing regulator of stress resistance and oxidative response. J. Biol. Chem. 287:21102-21109. http://dx.doi.org/10.1074/jbc.M112.359737.
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 21102-21109
-
-
Ji, Q.1
Zhang, L.2
Sun, F.3
Deng, X.4
Liang, H.5
Bae, T.6
He, C.7
-
15
-
-
72949110182
-
Pseudomonas aeruginosa OspR is an oxidative stress sensing regulator that affects pigment production, antibiotic resistance and dissemination during infection
-
Lan L, Murray TS, Kazmierczak BI, He C. 2010. Pseudomonas aeruginosa OspR is an oxidative stress sensing regulator that affects pigment production, antibiotic resistance and dissemination during infection. Mol. Microbiol. 75:76-91. http://dx.doi.org/10.1111/j.1365-2958.2009.06955.x.
-
(2010)
Mol. Microbiol.
, vol.75
, pp. 76-91
-
-
Lan, L.1
Murray, T.S.2
Kazmierczak, B.I.3
He, C.4
-
16
-
-
84875182792
-
Proteome-wide quantification and characterization of oxidation-sensitive cysteines in pathogenic bacteria
-
Deng X, Weerapana E, Ulanovskaya O, Sun F, Liang H, Ji Q, Ye Y, Fu Y, Zhou L, Li J, Zhang H, Wang C, Alvarez S, Hicks LM, Lan L, Wu M, Cravatt BF, He C. 2013. Proteome-wide quantification and characterization of oxidation-sensitive cysteines in pathogenic bacteria. Cell Host Microbe 13:358-370. http://dx.doi.org/10.1016/j.chom.2013.02.004.
-
(2013)
Cell Host Microbe
, vol.13
, pp. 358-370
-
-
Deng, X.1
Weerapana, E.2
Ulanovskaya, O.3
Sun, F.4
Liang, H.5
Ji, Q.6
Ye, Y.7
Fu, Y.8
Zhou, L.9
Li, J.10
Zhang, H.11
Wang, C.12
Alvarez, S.13
Hicks, L.M.14
Lan, L.15
Wu, M.16
Cravatt, B.F.17
He, C.18
-
17
-
-
79951878943
-
Redox signaling in human pathogens
-
Chen PR, Brugarolas P, He C. 2011. Redox signaling in human pathogens. Antioxid. Redox Signal. 14:1107-1118. http://dx.doi.org/10.1089/ars.2010.3374.
-
(2011)
Antioxid. Redox Signal.
, vol.14
, pp. 1107-1118
-
-
Chen, P.R.1
Brugarolas, P.2
He, C.3
-
18
-
-
79953906141
-
The pentose phosphate pathway is a metabolic redox sensor and regulates transcription during the antioxidant response
-
Kruger A, Gruning NM, Wamelink MM, Kerick M, Kirpy A, Parkhomchuk D, Bluemlein K, Schweiger MR, Soldatov A, Lehrach H, Jakobs C, Ralser M. 2011. The pentose phosphate pathway is a metabolic redox sensor and regulates transcription during the antioxidant response. Antioxid. Redox Signal. 15:311-324. http://dx.doi.org/10.1089/ars.2010.3797.
-
(2011)
Antioxid. Redox Signal.
, vol.15
, pp. 311-324
-
-
Kruger, A.1
Gruning, N.M.2
Wamelink, M.M.3
Kerick, M.4
Kirpy, A.5
Parkhomchuk, D.6
Bluemlein, K.7
Schweiger, M.R.8
Soldatov, A.9
Lehrach, H.10
Jakobs, C.11
Ralser, M.12
-
19
-
-
0026081456
-
Molecular characterization of the gor gene encoding glutathione reductase from Pseudomonas aeruginosa: determinants of substrate specificity among pyridine nucleotide-disulphide oxidoreductases
-
Perry AC, Ni Bhriain N, Brown NL, Rouch DA. 1991. Molecular characterization of the gor gene encoding glutathione reductase from Pseudomonas aeruginosa: determinants of substrate specificity among pyridine nucleotide-disulphide oxidoreductases. Mol. Microbiol. 5:163-171. http://dx.doi.org/10.1111/j.1365-2958.1991.tb01837.x.
-
(1991)
Mol. Microbiol.
, vol.5
, pp. 163-171
-
-
Perry, A.C.1
Ni Bhriain, N.2
Brown, N.L.3
Rouch, D.A.4
-
20
-
-
0347915666
-
Transcriptional regulation of the Staphylococcus aureus thioredoxin and thioredoxin reductase genes in response to oxygen and disulfide stress
-
Uziel O, Borovok I, Schreiber R, Cohen G, Aharonowitz Y. 2004. Transcriptional regulation of the Staphylococcus aureus thioredoxin and thioredoxin reductase genes in response to oxygen and disulfide stress. J. Bacteriol. 186:326-334. http://dx.doi.org/10.1128/JB.186.2.326-334.2004.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 326-334
-
-
Uziel, O.1
Borovok, I.2
Schreiber, R.3
Cohen, G.4
Aharonowitz, Y.5
-
21
-
-
0038460063
-
The DNA excision repair system of the highly radioresistant bacterium Deinococcus radiodurans is facilitated by the pentose phosphate pathway
-
Zhang YM, Liu JK, Wong TY. 2003. The DNA excision repair system of the highly radioresistant bacterium Deinococcus radiodurans is facilitated by the pentose phosphate pathway. Mol. Microbiol. 48:1317-1323. http://dx.doi.org/10.1046/j.1365-2958.2003.03486.x.
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 1317-1323
-
-
Zhang, Y.M.1
Liu, J.K.2
Wong, T.Y.3
-
22
-
-
78649938803
-
Comparison of the regulation, metabolic functions, and roles in virulence of the glyceraldehyde-3-phosphate dehydrogenase homologues gapA and gapB in Staphylococcus aureus
-
Purves J, Cockayne A, Moody PC, Morrissey JA. 2010. Comparison of the regulation, metabolic functions, and roles in virulence of the glyceraldehyde-3-phosphate dehydrogenase homologues gapA and gapB in Staphylococcus aureus.Infect.Immun.78:5223-5232.http://dx.doi.org/10.1128/IAI.00762-10.
-
(2010)
Infect. Immun.
, vol.78
, pp. 5223-5232
-
-
Purves, J.1
Cockayne, A.2
Moody, P.C.3
Morrissey, J.A.4
-
23
-
-
0037344870
-
Regulation of the central glycolytic genes in Bacillus subtilis: binding of the repressor CggR to its single DNA target sequence is modulated by fructose-1,6-bisphosphate
-
Doan T, Aymerich S. 2003. Regulation of the central glycolytic genes in Bacillus subtilis: binding of the repressor CggR to its single DNA target sequence is modulated by fructose-1,6-bisphosphate. Mol. Microbiol. 47: 1709-1721. http://dx.doi.org/10.1046/j.1365-2958.2003.03404.x.
-
(2003)
Mol. Microbiol.
, vol.47
, pp. 1709-1721
-
-
Doan, T.1
Aymerich, S.2
-
24
-
-
69249147800
-
Regulation of glucose metabolism in Pseudomonas: the phosphorylative branch and Entner-Doudoroff enzymes are regulated by a repressor containing a sugar isomerase domain
-
Daddaoua A, Krell T, Ramos JL. 2009. Regulation of glucose metabolism in Pseudomonas: the phosphorylative branch and Entner-Doudoroff enzymes are regulated by a repressor containing a sugar isomerase domain. J. Biol. Chem. 284:21360-21368. http://dx.doi.org/10.1074/jbc.M109.014555.
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 21360-21368
-
-
Daddaoua, A.1
Krell, T.2
Ramos, J.L.3
-
25
-
-
37549072681
-
Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress
-
Ralser M, Wamelink MM, Kowald A, Gerisch B, Heeren G, Struys EA, Klipp E, Jakobs C, Breitenbach M, Lehrach H, Krobitsch S. 2007. Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress. J. Biol. 6:10. http://dx.doi.org/10.1186/jbiol61.
-
(2007)
J. Biol.
, vol.6
, pp. 10
-
-
Ralser, M.1
Wamelink, M.M.2
Kowald, A.3
Gerisch, B.4
Heeren, G.5
Struys, E.A.6
Klipp, E.7
Jakobs, C.8
Breitenbach, M.9
Lehrach, H.10
Krobitsch, S.11
-
26
-
-
32444433730
-
Global transcriptome analysis of Staphylococcus aureus response to hydrogen peroxide
-
Chang W, Small DA, Toghrol F, Bentley WE. 2006. Global transcriptome analysis of Staphylococcus aureus response to hydrogen peroxide. J. Bacteriol. 188:1648-1659. http://dx.doi.org/10.1128/JB.188.4.1648-1659.2006.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 1648-1659
-
-
Chang, W.1
Small, D.A.2
Toghrol, F.3
Bentley, W.E.4
-
27
-
-
25444502996
-
Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxide
-
Chang W, Small DA, Toghrol F, Bentley WE. 2005. Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxide. BMC Genomics 6:115. http://dx.doi.org/10.1186/1471-2164-6-115.
-
(2005)
BMC Genomics
, vol.6
, pp. 115
-
-
Chang, W.1
Small, D.A.2
Toghrol, F.3
Bentley, W.E.4
-
28
-
-
77952886120
-
A protocol for the investigation of the intracellular Staphylococcus aureus metabolome
-
Meyer H, Liebeke M, Lalk M. 2010. A protocol for the investigation of the intracellular Staphylococcus aureus metabolome. Anal. Biochem. 401:250-259. http://dx.doi.org/10.1016/j.ab.2010.03.003
-
(2010)
Anal. Biochem.
, vol.401
, pp. 250-259
-
-
Meyer, H.1
Liebeke, M.2
Lalk, M.3
-
29
-
-
77956043214
-
The glycerophospho metabolome and its influence on amino acid homeostasis revealed by brain metabolomics of GDE1(-/-) mice
-
Kopp F, Komatsu T, Nomura DK, Trauger SA, Thomas JR, Siuzdak G, Simon GM, Cravatt BF. 2010. The glycerophospho metabolome and its influence on amino acid homeostasis revealed by brain metabolomics of GDE1(-/-) mice. Chem. Biol. 17:831-840. http://dx.doi.org/10.1016/j.chembiol.2010.06.009.
-
(2010)
Chem. Biol.
, vol.17
, pp. 831-840
-
-
Kopp, F.1
Komatsu, T.2
Nomura, D.K.3
Trauger, S.A.4
Thomas, J.R.5
Siuzdak, G.6
Simon, G.M.7
Cravatt, B.F.8
-
30
-
-
65449136284
-
TopHat: discovering splice junctions with RNA-Seq
-
Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25:1105-1111. http://dx.doi.org/10.1093/bioinformatics/btp120.
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
31
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell C, Williams BA, Pertea G, Mortazavi A, Kwan G, van Baren MJ, Salzberg SL, Wold BJ, Pachter L. 2010. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28:511-515. http://dx.doi.org/10.1038/nbt.1621.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
Williams, B.A.2
Pertea, G.3
Mortazavi, A.4
Kwan, G.5
van Baren, M.J.6
Salzberg, S.L.7
Wold, B.J.8
Pachter, L.9
-
32
-
-
61449172037
-
Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
-
Huang DW, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 4:44-57. http://dx.doi.org/10.1038/nprot.2008.211.
-
(2009)
Nat. Protoc.
, vol.4
, pp. 44-57
-
-
Huang, D.W.1
Sherman, B.T.2
Lempicki, R.A.3
-
33
-
-
84869054051
-
A travel guide to Cytoscape plugins
-
Saito R, Smoot ME, Ono K, Ruscheinski J, Wang PL, Lotia S, Pico AR, Bader GD, Ideker T. 2012. A travel guide to Cytoscape plugins. Nat. Methods 9:1069-1076. http://dx.doi.org/10.1038/nmeth.2212.
-
(2012)
Nat. Methods
, vol.9
, pp. 1069-1076
-
-
Saito, R.1
Smoot, M.E.2
Ono, K.3
Ruscheinski, J.4
Wang, P.L.5
Lotia, S.6
Pico, A.R.7
Bader, G.D.8
Ideker, T.9
-
34
-
-
0003772229
-
Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically
-
National Committee for Clinical Laboratory Standards, 5th ed: approved standard M7-A5. NCCLS, Wayne, PA
-
National Committee for Clinical Laboratory Standards. 2000. Methods for dilution antimicrobial susceptibility tests for bacteria that grow aerobically-5th ed: approved standard M7-A5. NCCLS, Wayne, PA.
-
(2000)
-
-
-
35
-
-
0037386640
-
Type III protein secretion in Pseudomonas syringae
-
Jin Q, Thilmony R, Zwiesler-Vollick J, He SY. 2003. Type III protein secretion in Pseudomonas syringae. Microbes Infect. 5:301-310.http://dx.doi.org/10.1016/S1286-4579(03)00032-7.
-
(2003)
Microbes Infect.
, vol.5
, pp. 301-310
-
-
Jin, Q.1
Thilmony, R.2
Zwiesler-Vollick, J.3
He, S.Y.4
-
36
-
-
33646579179
-
An expression vector tailored for largescale, high-throughput purification of recombinant proteins
-
Donnelly MI, Zhou M, Millard CS, Clancy S, Stols L, Eschenfeldt WH, Collart FR, Joachimiak A. 2006. An expression vector tailored for largescale, high-throughput purification of recombinant proteins. Protein Expr. Purif. 47:446-454. http://dx.doi.org/10.1016/j.pep.2005.12.011.
-
(2006)
Protein Expr. Purif.
, vol.47
, pp. 446-454
-
-
Donnelly, M.I.1
Zhou, M.2
Millard, C.S.3
Clancy, S.4
Stols, L.5
Eschenfeldt, W.H.6
Collart, F.R.7
Joachimiak, A.8
-
37
-
-
33745875402
-
Identification of the DNA bases of a DNase I footprint by the use of dye primer sequencing on an automated capillary DNA analysis instrument
-
Zianni M, Tessanne K, Merighi M, Laguna R, Tabita FR. 2006. Identification of the DNA bases of a DNase I footprint by the use of dye primer sequencing on an automated capillary DNA analysis instrument. J. Biomol. Tech. 17:103-113.
-
(2006)
J. Biomol. Tech.
, vol.17
, pp. 103-113
-
-
Zianni, M.1
Tessanne, K.2
Merighi, M.3
Laguna, R.4
Tabita, F.R.5
-
38
-
-
79955886933
-
Metabolite-enabled eradication of bacterial persisters by aminoglycosides
-
Allison KR, Brynildsen MP, Collins JJ. 2011. Metabolite-enabled eradication of bacterial persisters by aminoglycosides. Nature 473:216-220. http://dx.doi.org/10.1038/nature10069.
-
(2011)
Nature
, vol.473
, pp. 216-220
-
-
Allison, K.R.1
Brynildsen, M.P.2
Collins, J.J.3
-
39
-
-
0003443850
-
Methods of enzymatic analysis
-
3rd ed. Verlag Chemie, Weinheim, Germany
-
Bergmeyer HU, Bergmeyer J, Grassl M. 1983. Methods of enzymatic analysis, 3rd ed. Verlag Chemie, Weinheim, Germany.
-
(1983)
-
-
Bergmeyer, H.U.1
Bergmeyer, J.2
Grassl, M.3
-
40
-
-
0018240468
-
A rapid, enzymatic assay for the measurement of inorganic pyrophosphate in animal tissues
-
Cook GA, O'Brien WE, Wood HG, King MT, Veech RL. 1978. A rapid, enzymatic assay for the measurement of inorganic pyrophosphate in animal tissues. Anal. Biochem. 91:557-565. http://dx.doi.org/10.1016/0003-2697(78)90543-2.
-
(1978)
Anal. Biochem.
, vol.91
, pp. 557-565
-
-
Cook, G.A.1
O'Brien, W.E.2
Wood, H.G.3
King, M.T.4
Veech, R.L.5
-
41
-
-
2142803656
-
Transporter-mediated uptake of 2-chloro- and 2-hydroxybenzoate by Pseudomonas huttiensis strain D1
-
Yuroff AS, Sabat G, Hickey WJ. 2003. Transporter-mediated uptake of 2-chloro- and 2-hydroxybenzoate by Pseudomonas huttiensis strain D1. Appl. Environ. Microbiol. 69:7401-7408. http://dx.doi.org/10.1128/AEM.69.12.7401-7408.2003.
-
(2003)
Appl. Environ. Microbiol.
, vol.69
, pp. 7401-7408
-
-
Yuroff, A.S.1
Sabat, G.2
Hickey, W.J.3
-
42
-
-
35648977174
-
Mutagenesis of the phosphatebinding pocket of KDPG aldolase enhances selectivity for hydrophobic substrates
-
Cheriyan M, Toone EJ, Fierke CA. 2007. Mutagenesis of the phosphatebinding pocket of KDPG aldolase enhances selectivity for hydrophobic substrates. Protein Sci. 16:2368-2377. http://dx.doi.org/10.1110/ps.073042907.
-
(2007)
Protein Sci.
, vol.16
, pp. 2368-2377
-
-
Cheriyan, M.1
Toone, E.J.2
Fierke, C.A.3
-
43
-
-
0032575051
-
A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants
-
Hoang TT, Karkhoff-Schweizer RR, Kutchma AJ, Schweizer HP. 1998. A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: application for isolation of unmarked Pseudomonas aeruginosa mutants. Gene 212:77-86. http://dx.doi.org/10.1016/S0378-1119(98)00130-9.
-
(1998)
Gene
, vol.212
, pp. 77-86
-
-
Hoang, T.T.1
Karkhoff-Schweizer, R.R.2
Kutchma, A.J.3
Schweizer, H.P.4
-
44
-
-
0034912851
-
NAD(P)H, a directly operating antioxidant?
-
Kirsch M, De Groot H. 2001. NAD(P)H, a directly operating antioxidant? FASEB J. 15:1569-1574. http://dx.doi.org/10.1096/fj.00-0823hyp.
-
(2001)
FASEB J.
, vol.15
, pp. 1569-1574
-
-
Kirsch, M.1
De Groot, H.2
-
45
-
-
0023491513
-
Control of glycolysis by glyceraldehyde-3-phosphate dehydrogenase in Streptococcus cremoris and Streptococcus lactis
-
Poolman B, Bosman B, Kiers J, Konings WN. 1987. Control of glycolysis by glyceraldehyde-3-phosphate dehydrogenase in Streptococcus cremoris and Streptococcus lactis. J. Bacteriol. 169:5887-5890.
-
(1987)
J. Bacteriol.
, vol.169
, pp. 5887-5890
-
-
Poolman, B.1
Bosman, B.2
Kiers, J.3
Konings, W.N.4
-
46
-
-
0036194027
-
A potential role for periplasmic superoxide dismutase in blocking the penetration of external superoxide into the cytosol of Gram-negative bacteria
-
Korshunov SS, Imlay JA. 2002. A potential role for periplasmic superoxide dismutase in blocking the penetration of external superoxide into the cytosol of Gram-negative bacteria. Mol. Microbiol. 43:95-106. http://dx.doi.org/10.1046/j.1365-2958.2002.02719.x.
-
(2002)
Mol. Microbiol.
, vol.43
, pp. 95-106
-
-
Korshunov, S.S.1
Imlay, J.A.2
-
47
-
-
0346991729
-
Transcriptome analysis of the response of Pseudomonas aeruginosa to hydrogen peroxide
-
Palma M, DeLuca D, Worgall S, Quadri LE. 2004. Transcriptome analysis of the response of Pseudomonas aeruginosa to hydrogen peroxide. J. Bacteriol. 186:248-252. http://dx.doi.org/10.1128/JB.186.1.248-252.2004.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 248-252
-
-
Palma, M.1
DeLuca, D.2
Worgall, S.3
Quadri, L.E.4
-
48
-
-
16844381838
-
Genome-wide transcriptional profiling of the steady-state response of Pseudomonas aeruginosa to hydrogen peroxide
-
Salunkhe P, Topfer T, Buer J, Tummler B. 2005. Genome-wide transcriptional profiling of the steady-state response of Pseudomonas aeruginosa to hydrogen peroxide. J. Bacteriol. 187:2565-2572. http://dx.doi.org/10.1128/JB.187.8.2565-2572.2005.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 2565-2572
-
-
Salunkhe, P.1
Topfer, T.2
Buer, J.3
Tummler, B.4
-
49
-
-
49749101196
-
Proteomic analysis of antioxidant strategies of Staphylococcus aureus: diverse responses to different oxidants
-
Wolf C, Hochgrafe F, Kusch H, Albrecht D, Hecker M, Engelmann S. 2008. Proteomic analysis of antioxidant strategies of Staphylococcus aureus: diverse responses to different oxidants. Proteomics 8:3139-3153. http://dx.doi.org/10.1002/pmic.200701062.
-
(2008)
Proteomics
, vol.8
, pp. 3139-3153
-
-
Wolf, C.1
Hochgrafe, F.2
Kusch, H.3
Albrecht, D.4
Hecker, M.5
Engelmann, S.6
-
50
-
-
11144354767
-
Global regulation of quorum sensing and virulence by VqsR in Pseudomonas aeruginosa
-
Juhas M, Wiehlmann L, Huber B, Jordan D, Lauber J, Salunkhe P, Limpert AS, von Gotz F, Steinmetz I, Eberl L, Tummler B. 2004. Global regulation of quorum sensing and virulence by VqsR in Pseudomonas aeruginosa. Microbiology 150:831-841. http://dx.doi.org/10.1099/mic.0.26906-0.
-
(2004)
Microbiology
, vol.150
, pp. 831-841
-
-
Juhas, M.1
Wiehlmann, L.2
Huber, B.3
Jordan, D.4
Lauber, J.5
Salunkhe, P.6
Limpert, A.S.7
von Gotz, F.8
Steinmetz, I.9
Eberl, L.10
Tummler, B.11
-
51
-
-
84866924923
-
The single-nucleotide resolution transcriptome of Pseudomonas aeruginosa grown in body temperature
-
Wurtzel O, Yoder-Himes DR, Han K, Dandekar AA, Edelheit S, Greenberg EP, Sorek R, Lory S. 2012. The single-nucleotide resolution transcriptome of Pseudomonas aeruginosa grown in body temperature. PLoS Pathog. 8:e1002945. http://dx.doi.org/10.1371/journal.ppat.1002945.
-
(2012)
PLoS Pathog.
, vol.8
-
-
Wurtzel, O.1
Yoder-Himes, D.R.2
Han, K.3
Dandekar, A.A.4
Edelheit, S.5
Greenberg, E.P.6
Sorek, R.7
Lory, S.8
-
52
-
-
68049100110
-
Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli
-
Bennett BD, Kimball EH, Gao M, Osterhout R, Van Dien SJ, Rabinowitz JD. 2009. Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli. Nat. Chem. Biol. 5:593-599. http://dx.doi.org/10.1038/nchembio.186.
-
(2009)
Nat. Chem. Biol.
, vol.5
, pp. 593-599
-
-
Bennett, B.D.1
Kimball, E.H.2
Gao, M.3
Osterhout, R.4
Van Dien, S.J.5
Rabinowitz, J.D.6
-
53
-
-
0141941680
-
Making informed decisions: regulatory interactions between two-component systems
-
Bijlsma JJ, Groisman EA. 2003. Making informed decisions: regulatory interactions between two-component systems. Trends Microbiol. 11: 359-366. http://dx.doi.org/10.1016/S0966-842X(03)00176-8.
-
(2003)
Trends Microbiol.
, vol.11
, pp. 359-366
-
-
Bijlsma, J.J.1
Groisman, E.A.2
-
54
-
-
18944375835
-
Quantitative interdependence of coeffectors, CcpA and cre in carbon catabolite regulation of Bacillus subtilis
-
Seidel G, Diel M, Fuchsbauer N, Hillen W. 2005. Quantitative interdependence of coeffectors, CcpA and cre in carbon catabolite regulation of Bacillus subtilis. FEBS J. 272:2566-2577. http://dx.doi.org/10.1111/j.1742-4658.2005.04682.x.
-
(2005)
FEBS J.
, vol.272
, pp. 2566-2577
-
-
Seidel, G.1
Diel, M.2
Fuchsbauer, N.3
Hillen, W.4
-
55
-
-
0037167469
-
Analysis of the zwf-pgl-eda-operon in Pseudomonas putida strainsHand KT2440
-
Petruschka L, Adolf K, Burchhardt G, Dernedde J, Jurgensen J, Herrmann H. 2002. Analysis of the zwf-pgl-eda-operon in Pseudomonas putida strainsHand KT2440. FEMS Microbiol. Lett. 215:89-95. http://dx.doi.org/10.1111/j.1574-6968.2002.tb11375.x.
-
(2002)
FEMS Microbiol. Lett.
, vol.215
, pp. 89-95
-
-
Petruschka, L.1
Adolf, K.2
Burchhardt, G.3
Dernedde, J.4
Jurgensen, J.5
Herrmann, H.6
-
56
-
-
78449249372
-
Control of redox balance by the stringent response regulatory protein promotes antioxidant defenses of Salmonella
-
Henard CA, Bourret TJ, Song M, Vazquez-Torres A. 2010. Control of redox balance by the stringent response regulatory protein promotes antioxidant defenses of Salmonella. J. Biol. Chem. 285:36785-36793. http://dx.doi.org/10.1074/jbc.M110.160960.
-
(2010)
J. Biol. Chem.
, vol.285
, pp. 36785-36793
-
-
Henard, C.A.1
Bourret, T.J.2
Song, M.3
Vazquez-Torres, A.4
-
57
-
-
67650473274
-
Metabolic reconfiguration precedes transcriptional regulation in the antioxidant response
-
Ralser M, Wamelink MM, Latkolik S, Jansen EE, Lehrach H, Jakobs C. 2009. Metabolic reconfiguration precedes transcriptional regulation in the antioxidant response. Nat. Biotechnol. 27:604-605. http://dx.doi.org/10.1038/nbt0709-604.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 604-605
-
-
Ralser, M.1
Wamelink, M.M.2
Latkolik, S.3
Jansen, E.E.4
Lehrach, H.5
Jakobs, C.6
-
58
-
-
81355127364
-
α-Ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition
-
Doucette CD, Schwab DJ, Wingreen NS, Rabinowitz JD. 2011. α-Ketoglutarate coordinates carbon and nitrogen utilization via enzyme I inhibition. Nat. Chem. Biol. 7:894-901. http://dx.doi.org/10.1038/nchembio.685.
-
(2011)
Nat. Chem. Biol.
, vol.7
, pp. 894-901
-
-
Doucette, C.D.1
Schwab, D.J.2
Wingreen, N.S.3
Rabinowitz, J.D.4
-
59
-
-
58949096129
-
Dual regulation of zwf-1 by both 2-keto-3-deoxy-6-phosphogluconate and oxidative stress in Pseudomonas putida
-
Kim J, Jeon CO, Park W. 2008. Dual regulation of zwf-1 by both 2-keto-3-deoxy-6-phosphogluconate and oxidative stress in Pseudomonas putida. Microbiology 154:3905-3916. http://dx.doi.org/10.1099/mic.0.2008/020362-0.
-
(2008)
Microbiology
, vol.154
, pp. 3905-3916
-
-
Kim, J.1
Jeon, C.O.2
Park, W.3
-
60
-
-
55749116150
-
Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network
-
Chechik G, Oh E, Rando O, Weissman J, Regev A, Koller D. 2008. Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network. Nat. Biotechnol. 26:1251-1259. http://dx.doi.org/10.1038/nbt.1499.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1251-1259
-
-
Chechik, G.1
Oh, E.2
Rando, O.3
Weissman, J.4
Regev, A.5
Koller, D.6
-
61
-
-
12444279265
-
On the origin of cancer cells
-
Warburg O. 1956. On the origin of cancer cells. Science 123:309-314. http://dx.doi.org/10.1126/science.123.3191.309.
-
(1956)
Science
, vol.123
, pp. 309-314
-
-
Warburg, O.1
-
62
-
-
8144228566
-
Why do cancers have high aerobic glycolysis?
-
Gatenby RA, Gillies RJ. 2004. Why do cancers have high aerobic glycolysis? Nat. Rev. Cancer 4:891-899. http://dx.doi.org/10.1038/nrc1478.
-
(2004)
Nat. Rev. Cancer
, vol.4
, pp. 891-899
-
-
Gatenby, R.A.1
Gillies, R.J.2
-
63
-
-
33749478922
-
Cancer's molecular sweet tooth and the Warburg effect
-
Kim JW, Dang CV. 2006. Cancer's molecular sweet tooth and the Warburg effect. Cancer Res. 66:8927-8930. http://dx.doi.org/10.1158/0008-5472.CAN-06-1501.
-
(2006)
Cancer Res.
, vol.66
, pp. 8927-8930
-
-
Kim, J.W.1
Dang, C.V.2
|