메뉴 건너뛰기




Volumn 6, Issue , 2005, Pages

Microarray analysis of Pseudomonas aeruginosa reveals induction of pyocin genes in response to hydrogen peroxide

Author keywords

[No Author keywords available]

Indexed keywords

ANTIOXIDANT; CATALASE; HYDROGEN PEROXIDE; IRON; PROTEIN; PYOCIN; PYOCIN S2 IMMUNITY PROTEIN; TRANSCRIPTOME; UNCLASSIFIED DRUG;

EID: 25444502996     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-6-115     Document Type: Article
Times cited : (146)

References (57)
  • 1
  • 2
    • 0028871420 scopus 로고
    • Superoxide and the production of oxidative DNA damage
    • Keyer K, Gort AS, Imlay JA: Superoxide and the production of oxidative DNA damage. J Bacteriol 1995, 177:6782-6790.
    • (1995) J. Bacteriol. , vol.177 , pp. 6782-6790
    • Keyer, K.1    Gort, A.S.2    Imlay, J.A.3
  • 3
    • 0031935122 scopus 로고    scopus 로고
    • Endogenous superoxide dismutase levels regulate iron-dependent hydroxyl radical formation in Escherichia coli exposed to hydrogen peroxide
    • McCormick ML, Buettner GR, Britigan BE: Endogenous superoxide dismutase levels regulate iron-dependent hydroxyl radical formation in Escherichia coli exposed to hydrogen peroxide. J Bacteriol 1998, 180:622-625.
    • (1998) J. Bacteriol. , vol.180 , pp. 622-625
    • McCormick, M.L.1    Buettner, G.R.2    Britigan, B.E.3
  • 4
    • 0030465238 scopus 로고    scopus 로고
    • Superoxide accelerates DNA damage by elevating free-iron levels
    • Keyer K, Imlay JA: Superoxide accelerates DNA damage by elevating free-iron levels. Proc Natl Acad Sci 1996, 93:13635-13640.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 13635-13640
    • Keyer, K.1    Imlay, J.A.2
  • 5
    • 0242608621 scopus 로고    scopus 로고
    • Pathways of oxidative damage
    • Imlay JA: Pathways of oxidative damage. Annu Rev Microbiol 2003, 57: 395-418.
    • (2003) Annu. Rev. Microbiol. , vol.57 , pp. 395-418
    • Imlay, J.A.1
  • 6
    • 0028889269 scopus 로고
    • Cloning and characterization of the katB gene of Pseudomonas aeruginosa encoding a hydrogen peroxide-inducible catalase: Purification of KatB, cellular localization, and demonstration that it is essential for optimal resistance to hydrogen peroxide
    • Brown SM, Howell ML, Vasil ML, Anderson AJ, Hassett DJ: Cloning and characterization of the katB gene of Pseudomonas aeruginosa encoding a hydrogen peroxide-inducible catalase: purification of KatB, cellular localization, and demonstration that it is essential for optimal resistance to hydrogen peroxide. J Bacteriol 1995, 177:6536-6544.
    • (1995) J. Bacteriol. , vol.177 , pp. 6536-6544
    • Brown, S.M.1    Howell, M.L.2    Vasil, M.L.3    Anderson, A.J.4    Hassett, D.J.5
  • 7
    • 0033874090 scopus 로고    scopus 로고
    • Role of the Pseudomonas aeruginosa oxyR-recG operon in oxidative stress defense and DNA repair: OxyR-dependent regulation of katB-ankB, ahpB, and ahpC-ahpF
    • Ochsner UA, Vasil ML, Alsabbagh E, Parvatiyar K, Hassett DJ: Role of the Pseudomonas aeruginosa oxyR-recG operon in oxidative stress defense and DNA repair: OxyR-dependent regulation of katB-ankB, ahpB, and ahpC-ahpF. J Bacteriol 2000, 182:4533-4544.
    • (2000) J. Bacteriol. , vol.182 , pp. 4533-4544
    • Ochsner, U.A.1    Vasil, M.L.2    Alsabbagh, E.3    Parvatiyar, K.4    Hassett, D.J.5
  • 8
    • 1242351547 scopus 로고    scopus 로고
    • Analysis of regulatory networks in Pseudomonas aeruginosa by genomewide transcriptional profiling
    • Goodman AL, Lory S: Analysis of regulatory networks in Pseudomonas aeruginosa by genomewide transcriptional profiling. Curr Opin Microbiol 2004, 7:39-44.
    • (2004) Curr. Opin. Microbiol. , vol.7 , pp. 39-44
    • Goodman, A.L.1    Lory, S.2
  • 9
    • 1842585499 scopus 로고    scopus 로고
    • The temporal expression profile of Mycobacterium tuberculosis infection in mice
    • Talaat A, Lyons R, Howard S, Johnston S: The temporal expression profile of Mycobacterium tuberculosis infection in mice. Proc Natl Acad Sci 2004, 101:4602-4607.
    • (2004) Proc. Natl. Acad. Sci. , vol.101 , pp. 4602-4607
    • Talaat, A.1    Lyons, R.2    Howard, S.3    Johnston, S.4
  • 11
    • 0033907235 scopus 로고    scopus 로고
    • A protease-resistant catalase, KatA, released upon cell lysis during stationary phase is essential for aerobic survival of a Pseudomonas aeruginosa oxyR mutant at low cell densities
    • Hassett DJ, Alsabbagh E, Parvatiyar K, Howell ML, Wilmott RW, Ochsner UA: A protease-resistant catalase, KatA, released upon cell lysis during stationary phase is essential for aerobic survival of a Pseudomonas aeruginosa oxyR mutant at low cell densities. J Bacteriol 2000 182:4557-4563.
    • (2000) J. Bacteriol. , vol.182 , pp. 4557-4563
    • Hassett, D.J.1    Alsabbagh, E.2    Parvatiyar, K.3    Howell, M.L.4    Wilmott, R.W.5    Ochsner, U.A.6
  • 12
    • 0346991729 scopus 로고    scopus 로고
    • Transcriptome analysis of the response of Pseudomonas aeruginosa to hydrogen peroxide
    • Palma M, DeLuca D, Worgall S, Quadri LE: Transcriptome analysis of the response of Pseudomonas aeruginosa to hydrogen peroxide. J Bacteriol 2004, 186:248-252.
    • (2004) J. Bacteriol. , vol.186 , pp. 248-252
    • Palma, M.1    DeLuca, D.2    Worgall, S.3    Quadri, L.E.4
  • 16
    • 0034932337 scopus 로고    scopus 로고
    • DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide
    • Zheng M, Wang X, Templeton LJ, Smulski DR, LaRossa RA, Storz G: DNA microarray-mediated transcriptional profiling of the Escherichia coli response to hydrogen peroxide. J Bacteriol 2001, 183:4562-4570.
    • (2001) J. Bacteriol. , vol.183 , pp. 4562-4570
    • Zheng, M.1    Wang, X.2    Templeton, L.J.3    Smulski, D.R.4    LaRossa, R.A.5    Storz, G.6
  • 17
    • 25444491128 scopus 로고    scopus 로고
    • Gene Expression Omnibus (GEO)
    • Gene Expression Omnibus (GEO) [http://www.ncbi.nlm.nih.gov/geo]
  • 18
    • 0038733705 scopus 로고    scopus 로고
    • Expression stability of six housekeeping genes: A proposal for resistance gene quantification studies of Pseudomonas aeruginosa by real-time quantitative RT-PCR
    • Savli H, Karadenizli A, Kolayli F, Gundes S, Ozbek U, Vahaboglu H: Expression stability of six housekeeping genes: a proposal for resistance gene quantification studies of Pseudomonas aeruginosa by real-time quantitative RT-PCR. J Med Microbiol 2003, 52:403-408.
    • (2003) J. Med. Microbiol. , vol.52 , pp. 403-408
    • Savli, H.1    Karadenizli, A.2    Kolayli, F.3    Gundes, S.4    Ozbek, U.5    Vahaboglu, H.6
  • 19
    • 25444510274 scopus 로고    scopus 로고
    • The Pseudomonas aeruginosa Community Annotation Project
    • The Pseudomonas aeruginosa Community Annotation Project [http://www.pseudomonas.com]
  • 20
    • 0023197642 scopus 로고
    • Evolution of the enterobacterial sulA gene: A component of the SOS system encoding an inhibitor of cell division
    • Freudl R, Braun G, Honore N, Cole ST: Evolution of the enterobacterial sulA gene: a component of the SOS system encoding an inhibitor of cell division. Gene 1987, 52:31-40.
    • (1987) Gene , vol.52 , pp. 31-40
    • Freudl, R.1    Braun, G.2    Honore, N.3    Cole, S.T.4
  • 22
    • 0028809394 scopus 로고
    • Pseudomonas aeruginosa sodA and sodB mutants defective in manganese- and iron-cofactored superoxide dismutase activity demonstrate the importance of the iron-cofactored form in aerobic metabolism
    • Hassett DJ, Schweizer HP, Ohman DE: Pseudomonas aeruginosa sodA and sodB mutants defective in manganese- and iron-cofactored superoxide dismutase activity demonstrate the importance of the iron-cofactored form in aerobic metabolism. J Bacteriol 1995, 177:6330-6337.
    • (1995) J. Bacteriol. , vol.177 , pp. 6330-6337
    • Hassett, D.J.1    Schweizer, H.P.2    Ohman, D.E.3
  • 23
    • 0030811135 scopus 로고    scopus 로고
    • Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps
    • Martinez A, Kolter R: Protection of DNA during oxidative stress by the nonspecific DNA-binding protein Dps. J Bacteriol 1997, 179:5188-5194.
    • (1997) J. Bacteriol. , vol.179 , pp. 5188-5194
    • Martinez, A.1    Kolter, R.2
  • 24
    • 0025810994 scopus 로고
    • Mechanism of specific LexA cleavage: Autodigestion and the role of RecA coprotease
    • Little JW: Mechanism of specific LexA cleavage: autodigestion and the role of RecA coprotease. Biochimie 1991, 73:411-421.
    • (1991) Biochimie , vol.73 , pp. 411-421
    • Little, J.W.1
  • 25
    • 0344321693 scopus 로고
    • Cell-division control in Escherichia coli: Specific induction of the SOS function SfiA protein is sufficient to block septation
    • Huisman O, D'Ari R, Gottesman S: Cell-division control in Escherichia coli: specific induction of the SOS function SfiA protein is sufficient to block septation. Proc Natl Acad Sci 1984, 81:4490-4494.
    • (1984) Proc. Natl. Acad. Sci. , vol.81 , pp. 4490-4494
    • Huisman, O.1    D'Ari, R.2    Gottesman, S.3
  • 26
    • 0027192845 scopus 로고
    • Role of the recA-related gene adjacent to the recA gene in Pseudomonas aeruginosa
    • Sano Y: Role of the recA-related gene adjacent to the recA gene in Pseudomonas aeruginosa. J Bacteriol 1993, 175:2451-2454.
    • (1993) J. Bacteriol. , vol.175 , pp. 2451-2454
    • Sano, Y.1
  • 27
    • 0031736728 scopus 로고    scopus 로고
    • Construction and complementation of a recA deletion mutant of Mycobacterium smegmatis reveals that the intein in Mycobacterium tuberculosis recA does not affect RecA function
    • Papavinasasundaram KG, Colston MJ, Davis EO: Construction and complementation of a recA deletion mutant of Mycobacterium smegmatis reveals that the intein in Mycobacterium tuberculosis recA does not affect RecA function. Mol Microbiol 1998, 30:525-534.
    • (1998) Mol. Microbiol. , vol.30 , pp. 525-534
    • Papavinasasundaram, K.G.1    Colston, M.J.2    Davis, E.O.3
  • 29
    • 0032782802 scopus 로고    scopus 로고
    • Identification of genetic factors altering the SOS induction of DNA damage-inducible yebG gene in Escherichia coli
    • Oh TJ, Kim IG: Identification of genetic factors altering the SOS induction of DNA damage-inducible yebG gene in Escherichia coli. FEMS Microbiol Lett 1999, 177:271-277.
    • (1999) FEMS Microbiol. Lett. , vol.177 , pp. 271-277
    • Oh, T.J.1    Kim, I.G.2
  • 33
    • 0036046297 scopus 로고    scopus 로고
    • Iron transport and regulation, cell signaling and genomics: Lessons from Escherichia coli and Pseudomonas
    • Visca P, Leoni L, Wilson MJ, Lamont IL: Iron transport and regulation, cell signaling and genomics: lessons from Escherichia coli and Pseudomonas. Mol Microbiol 2002, 45:1177-1190.
    • (2002) Mol. Microbiol. , vol.45 , pp. 1177-1190
    • Visca, P.1    Leoni, L.2    Wilson, M.J.3    Lamont, I.L.4
  • 34
    • 0242576537 scopus 로고    scopus 로고
    • Transcriptome analysis of the Pseudomonas aeruginosa response to iron
    • Palma M, Worgall S, Quadri LE: Transcriptome analysis of the Pseudomonas aeruginosa response to iron. Arch Microbiol 2003, 180: 374-379.
    • (2003) Arch. Microbiol. , vol.180 , pp. 374-379
    • Palma, M.1    Worgall, S.2    Quadri, L.E.3
  • 35
    • 0031736408 scopus 로고    scopus 로고
    • Dihydroaeruginoic acid synthetase and pyochelin synthetase, products of the pchEF genes, are induced by extracellular pyochelin in Pseudomonas aeruginosa
    • Reimmann C, Serino L, Beyeler M, Haas D: Dihydroaeruginoic acid synthetase and pyochelin synthetase, products of the pchEF genes, are induced by extracellular pyochelin in Pseudomonas aeruginosa. Microbiol 1998, 144:3135-3148.
    • (1998) Microbiol. , vol.144 , pp. 3135-3148
    • Reimmann, C.1    Serino, L.2    Beyeler, M.3    Haas, D.4
  • 36
    • 0032704951 scopus 로고    scopus 로고
    • The response of Pseudomonas aeruginosa to iron: Genetics, biochemistry and virulence
    • Vasil ML, Ochsner UA: The response of Pseudomonas aeruginosa to iron: genetics, biochemistry and virulence. Mol Microbiol 1999, 34:399-413.
    • (1999) Mol. Microbiol. , vol.34 , pp. 399-413
    • Vasil, M.L.1    Ochsner, U.A.2
  • 37
    • 0027203781 scopus 로고
    • Cloning and nucleotide sequence analysis of the ferripyoverdine receptor gene fpvA of Pseudomonas aeruginosa
    • Poole K, Neshat S, Krebes K, Heinrichs DE: Cloning and nucleotide sequence analysis of the ferripyoverdine receptor gene fpvA of Pseudomonas aeruginosa. J Bacteriol 1993, 175:4597-4604.
    • (1993) J. Bacteriol. , vol.175 , pp. 4597-4604
    • Poole, K.1    Neshat, S.2    Krebes, K.3    Heinrichs, D.E.4
  • 38
    • 0029914952 scopus 로고    scopus 로고
    • PchR, a regulator of ferripyochelin receptor gene (fptA) expression in Pseudomonas aeruginosa, functions both as an activator and as a repressor
    • Heinrichs DE, Poole K: PchR, a regulator of ferripyochelin receptor gene (fptA) expression in Pseudomonas aeruginosa, functions both as an activator and as a repressor. J Bacteriol 1996, 178:2586-2592.
    • (1996) J. Bacteriol. , vol.178 , pp. 2586-2592
    • Heinrichs, D.E.1    Poole, K.2
  • 39
    • 0031020825 scopus 로고    scopus 로고
    • Biosynthesis of pyochelin and dihydroaeruginoic acid requires the iron-regulated pchDCBA operon in Pseudomonas aeruginosa
    • Serino L, Reimmann C, Visca P, Beyeler M, Chiesa VD, Haas D: Biosynthesis of pyochelin and dihydroaeruginoic acid requires the iron-regulated pchDCBA operon in Pseudomonas aeruginosa. J Bacteriol 1997, 179:248-257.
    • (1997) J. Bacteriol. , vol.179 , pp. 248-257
    • Serino, L.1    Reimmann, C.2    Visca, P.3    Beyeler, M.4    Chiesa, V.D.5    Haas, D.6
  • 40
    • 0036589162 scopus 로고    scopus 로고
    • The pyocins of Pseudomonas aeruginosa
    • Michel-Briand Y, Baysse C: The pyocins of Pseudomonas aeruginosa. Biochimie 2002, 84:499-510.
    • (2002) Biochimie , vol.84 , pp. 499-510
    • Michel-Briand, Y.1    Baysse, C.2
  • 42
    • 0035478958 scopus 로고    scopus 로고
    • Immunity proteins: Enzyme inhibitors that avoid the active site
    • Kleanthous C, Walker D: Immunity proteins: enzyme inhibitors that avoid the active site. Trends Biochem Sci 2001, 26:624-631.
    • (2001) Trends Biochem. Sci. , vol.26 , pp. 624-631
    • Kleanthous, C.1    Walker, D.2
  • 43
    • 0036589208 scopus 로고    scopus 로고
    • Importation of nuclease colicins into E. coli cells: Endoproteolytic cleavage and its prevention by the immunity protein
    • de Zamaroczy M, Buckingham RH: Importation of nuclease colicins into E. coli cells: endoproteolytic cleavage and its prevention by the immunity protein. Biochimie 2002, 84:423-432.
    • (2002) Biochimie , vol.84 , pp. 423-432
    • de Zamaroczy, M.1    Buckingham, R.H.2
  • 44
    • 0027155821 scopus 로고
    • Molecular structures and functions of pyocins S1 and S2 in Pseudomonas aeruginosa
    • Sano Y, Matsui H, Kobayashi M, Kageyama M: Molecular structures and functions of pyocins S1 and S2 in Pseudomonas aeruginosa. J Bacteriol 1993, 175:2907-2916.
    • (1993) J. Bacteriol. , vol.175 , pp. 2907-2916
    • Sano, Y.1    Matsui, H.2    Kobayashi, M.3    Kageyama, M.4
  • 45
    • 0027418843 scopus 로고
    • Regulation of pyocin genes in Pseudomonas aeruginosa by positive (prtN) and negative (prtR) regulatory genes
    • Matsui H, Sano Y, Ishihara H, Shinomiya T: Regulation of pyocin genes in Pseudomonas aeruginosa by positive (prtN) and negative (prtR) regulatory genes. J Bacteriol 1993, 175:1257-1263.
    • (1993) J. Bacteriol. , vol.175 , pp. 1257-1263
    • Matsui, H.1    Sano, Y.2    Ishihara, H.3    Shinomiya, T.4
  • 47
    • 3442890260 scopus 로고    scopus 로고
    • Cytotoxic effects of pyocin S2 produced by Pseudomonas aeruginosa on the growth of three human cell lines
    • Abdi-Ali A, Worobec EA, Deezagi A, Malekzadeh F: Cytotoxic effects of pyocin S2 produced by Pseudomonas aeruginosa on the growth of three human cell lines. Can J Microbiol 2004, 50:375-381.
    • (2004) Can. J. Microbiol. , vol.50 , pp. 375-381
    • Abdi-Ali, A.1    Worobec, E.A.2    Deezagi, A.3    Malekzadeh, F.4
  • 48
    • 0015429509 scopus 로고
    • Autosensitivity of Pseudomonas aeruginosa to its own pyocin
    • Goodwin K, Levin RE, Doggett RG: Autosensitivity of Pseudomonas aeruginosa to its own pyocin. Infect Immun 1972, 6:889-892.
    • (1972) Infect. Immun. , vol.6 , pp. 889-892
    • Goodwin, K.1    Levin, R.E.2    Doggett, R.G.3
  • 50
    • 0037378570 scopus 로고    scopus 로고
    • Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: A transcriptome analysis
    • Schuster M, Lostroh C, Ogi T, Greenberg E: Identification, timing, and signal specificity of Pseudomonas aeruginosa quorum-controlled genes: a transcriptome analysis. J Bacteriol 2003, 185:2066-2079.
    • (2003) J. Bacteriol. , vol.185 , pp. 2066-2079
    • Schuster, M.1    Lostroh, C.2    Ogi, T.3    Greenberg, E.4
  • 51
    • 0037377827 scopus 로고    scopus 로고
    • Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: Effects of growth phase and environment
    • Wagner V, Bushnell D, Passador L, Brooks A, Iglewski B: Microarray analysis of Pseudomonas aeruginosa quorum-sensing regulons: effects of growth phase and environment. J Bacteriol 2003, 185:2080-2095.
    • (2003) J. Bacteriol. , vol.185 , pp. 2080-2095
    • Wagner, V.1    Bushnell, D.2    Passador, L.3    Brooks, A.4    Iglewski, B.5
  • 52
    • 0033020220 scopus 로고    scopus 로고
    • Uptake of pyocin S3 occurs through the outer membrane ferripyoverdine type II receptor of Pseudomonas aeruginosa
    • Baysse C, Meyer JM, Plesiat P, Geoffroy V, Michel-Briand Y, Cornelis P: Uptake of pyocin S3 occurs through the outer membrane ferripyoverdine type II receptor of Pseudomonas aeruginosa. J Bacteriol 1999, 181:3849-3851.
    • (1999) J. Bacteriol. , vol.181 , pp. 3849-3851
    • Baysse, C.1    Meyer, J.M.2    Plesiat, P.3    Geoffroy, V.4    Michel-Briand, Y.5    Cornelis, P.6
  • 53
    • 0037379463 scopus 로고    scopus 로고
    • DNA microarrays in analysis of quorum sensing: Strengths and limitations
    • Vasil ML: DNA microarrays in analysis of quorum sensing: strengths and limitations. J Bacteriol 2003, 185:2061-2065.
    • (2003) J. Bacteriol. , vol.185 , pp. 2061-2065
    • Vasil, M.L.1
  • 55
    • 13244289800 scopus 로고    scopus 로고
    • Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function
    • Kang Y, Weber KD, Qiu Y, Kiley PJ, Blattner FR: Genome-wide expression analysis indicates that FNR of Escherichia coli K-12 regulates a large number of genes of unknown function. J Bacteriol 2005, 187:1135-1160.
    • (2005) J. Bacteriol. , vol.187 , pp. 1135-1160
    • Kang, Y.1    Weber, K.D.2    Qiu, Y.3    Kiley, P.J.4    Blattner, F.R.5
  • 56
    • 23244461204 scopus 로고    scopus 로고
    • Microarray analysis of toxicogenomic effects of peracetic acid on Pseudomonas aeruginosa
    • Chang W, Small DA, Toghrol F, Bentley WE: Microarray analysis of toxicogenomic effects of peracetic acid on Pseudomonas aeruginosa. Environ Sci Technol 2005, 39:5893-5899.
    • (2005) Environ. Sci. Technol. , vol.39 , pp. 5893-5899
    • Chang, W.1    Small, D.A.2    Toghrol, F.3    Bentley, W.E.4
  • 57
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • Pfaffl MW: A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 2001, 29:e45.
    • (2001) Nucleic Acids Res. , vol.29
    • Pfaffl, M.W.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.