Nanophotonic approaches for nanoscale imaging and single-molecule detection at ultrahigh concentrations

Microscopy Research and Technique

Volumn 77, Issue 7, 2014, Pages 537-545

  Mivelle, Mathieu ^a   Van Zanten, Thomas S ^a   Manzo, Carlo ^a   Garcia Parajo, Maria F ^a,b  

^a ICFO INSTITUT DE CIENCIES FOTONIQUES   (Spain)

^b INSTITUCIÓ CATALANA DE RECERCA I ESTUDIS AVANÇATS ICREA   (Spain)

Author keywords

Fluorescence correlation spectroscopy; Membrane organization; Optical antennas

Indexed keywords

ANTENNA ARRAYS; CELLS; CYTOLOGY; DIFFRACTION; FLUORESCENCE; FLUORESCENCE SPECTROSCOPY; NANOANTENNAS; NANOPHOTONICS; OPTICAL CORRELATION;

BREAKINGS; DIFFRACTION LIMIT OF LIGHT; FLUORESCENCE CORRELATION SPECTROSCOPY; MEMBRANE ORGANIZATION; NANO-METER-SCALE; NANO-SCALE IMAGING; OPTICAL ANTENNAS; OPTICAL TECHNIQUE; SINGLE-MOLECULE DETECTION; SUPER RESOLUTION IMAGING;

MOLECULES;

NANOMATERIAL;

ANIMAL; CELL MEMBRANE; DIAGNOSTIC USE; FLUORESCENCE MICROSCOPY; HUMAN; LIGHT RELATED PHENOMENA; PROCEDURES; SPECTROFLUOROMETRY; ULTRASTRUCTURE;

ANIMALS; CELL MEMBRANE; HUMANS; MICROSCOPY, FLUORESCENCE; NANOSTRUCTURES; OPTICAL PROCESSES; SPECTROMETRY, FLUORESCENCE;

EID: 84903214829     PISSN: 1059910X     EISSN: 10970029     Source Type: Journal    
DOI: 10.1002/jemt.22369     Document Type: Article

References (73)

1. Acuna GP, Moller FM, Holzmeister P, Beater S, Lalkens B, Tinnefeld P. 2012. Fluorescence Enhancement at Docking Sites of DNA-Directed Self-Assembled Nanoantennas. Science 338: 506-510.
2. Bao W, Melli M, Caselli N, Riboli F, Wiersma DS, Staffaroni M, Choo H, Ogletree DF, Aloni S, Bokor J, Cabrini S, Intonti F, Salmeron MB, Yablonovitch E, Schuck PJ, Weber-Bargioni A. 2012. Mapping local charge recombination heterogeneity by multidimensional nanospectroscopic imaging. Science 338: 1317-1321.
3. Betzig E, Trautman JK, Harris TD, Weiner JS, Kostelak RL. 1991. Breaking the diffraction barrier: optical microscopy on a nanometric scale. Science 251: 1468-1470.
4. Betzig E, Patterson GH, Sougrat R, Lindwasser OW, Olenuch S, Bonifacino JS, Davidson MW, Lippincott-Schwartz J, Hess HF. 2006. Imaging intracellular fluorescent proteins at nanometer resolution. Science 313: 1642-1645.
5. Cambi A, de Lange F, van Maarseveen NM, Nijhuis M, Joosten B, van Dijk EMHP, de Bakker BI., Fransen JAM, Bovee-Geurts PHM, van Leeuwen FN, Van Hulst NF, Figdor CG. 2004. Microdomains of the C-type lectin DC-SIGN are portals for virus entry into dendritic cells. J. Cell. Biol. 164: 145-155.
6. Cambi A, Joosten B, Koopman M, de Lange F, Beeren I. Torensma R, Fransen JA, Garcia-Parajó MF, van Leeuwen FN, Figdor CG. 2006. Organization of the integrin LFA-1 in nanoclusters regulates its activity. Mol. Biol. Cell. 17: 4270-4281.
7. Das G, Mecarini F, Gentile F, de Angelis F, Kumar HG, Candeloro P, Liberale C, Cuda G, di Fabrizio E. 2009. Nano-patterned SERS substrate: application for protein analysis vs. temperature. Biosens. Bioelect. 24: 1693-1699.
8. de Angelis F, Das G, Candeloro P, Patrini M, Galli M, Bek A, Lazzarino M, Maksymov I, Liberale C, Andreani LC, di Fabrizio E. 2009. Nanoscale chemical mapping using three-dimensional adiabatic compression of surface plasmon polaritons. Nat. Nanotechnology 5: 67-72.
9. de Angelis F, Liberale C, Coluccio ML, Cojoc G, di Fabrizio E. 2011. Emerging fabrication techniques for 3D nano-structuring in plasmonics and single molecule studies. Nanoscale DOI:10.1039/c1nr10124b.
10. de Angelis F, Malerba M, Patrini M, Miele E, Das G, Toma A, Proietti R, di Fabrizio E. 2013. 3D hollow nanostructures as building blocks for multifunctional plasmonics. Nano Lett. 13: 3553-3558.
11. de Bakker BI, Bodnar A, van Dijk E P, Vámosi G, Damjanovich S, Waldmann TA, van Hulst NF, Jenei A, Garcia-Parajo MF. 2008. Nanometer-scale organization of the alpha subunits of the receptors for IL2 and IL15 in human T lymphoma cells, J. Cell Sci. 121: 627-633.
12. de Lange F, Cambi A, Huijbens R, de Bakker BI, Rensen W, Garcia-Parajo MF, van Hulst NF, Figdor CG. 2001. Cell biology beyond the diffraction limit: near-field scanning optical microscopy, J. Cell Sci. 114: 4153-4160.
13. Donnert G, Keller J, Medda R, Andrei MA, Rizzoli SO, Luhrmann R, Jahn R, Eggeling C, Hell SW. 2006. Macromolecular-scale resolution in biological fluorescence microscopy. Proc. Natl. Acad. Sci. USA 103: 11440-11445.
14. Dûfrene YF, Garcia-Parajo MF. 2012. Recent progress in cell surface nanoscopy: light and forces in the near-field. Nano Today 7: 390-403.
15. Eggeling C, Hilbert M, Bock H, Ringemann C, Hofmann M, Stiel AC, Andresen M, Jacobs S, Egner A, Schonle A, Hell SW. 2007. Fluorescence flucatuaion spectroscopy at high molecular concentration. Microsc. Res. Techniq. 70: 1003-1009.
16. Eggeling C, Ringemann C, Medda R, Schwarzmann G, Sandhoff K, Polyakova S, Belov VN, Hein B, von Middendorff C, Schönle A, Hell SW. 2009. Direct observation of the nanoscale dynamics of membrane lipids in a living cell. Nature 457: 1159-1162.
17. Eid J, Fehr A, Gray J, Luong K, Lyle J, Otto G. Peluso P, Rank D, Baybayan P, Bettman B, Bibillo A, Bjornson K, Chaudhuri B, Christians F, Cicero R, Clark S, Dalal R, Dewinter A, Dixon J, Foquet M, Gaertner A, Hardenbol P, Heiner C, Hester K, Holden D, Kearns G, Kong X, Kuse R, Lacroix Y, Lin S, Lundquist P, Ma C, Marks P, Maxham M, Murphy D, Park I, Pham T, Phillips M, Roy J, Sebra R, Shen G, Sorenson J, Tomaney A, Travers K, Trulson M, Vieceli J, Wegener J, Wu D, Yang A, Zaccarin D, Zhao P, Zhong F, Korlach J, Turner S. 2009. Real-time DNA sequencing from single polymerase molecules. Science 323: 133-138.
18. Enderle T, Ha T, Ogletree DF, Chemla DS, Magowan C, Weiss S. 1997. Membrane specific mapping and colocalization of malarial and host skeletal proteins in the Plasmodium falciparum infected erythrocyte by dual-color near-field scanning optical microscopy, Proc. Natl. Acad. Sci. USA 94: 520-525.
19. Fujiwara T, Ritchie K, Murakoshi H, Jacobson K, Kusumi A. 2002. Phospholipids undergo hop diffusion in compartmentalized cell membrane. J. Cell Biol. 157: 1071-1081.
20. Garcia-Parajo MF, Veerman, JA, van Noort, SJT, de Grooth, BG, Greve, J, van Hulst, NF. 1998. Near-field optical microscopy for DNA studies at the single molecular level. Bioimaging 6: 43-53.
21. Garcia-Parajo MF. 2008. Optical antennas focus in on biology. Nature Photonics 2: 201-203.
22. Goswami D, Gowrishankar K, Bilgrami S, Ghosh S, Raghupathy R Chadda R, Vishwakarma R, Rao M, Mayor S. 2008. Nanoclusters of GPI-anchored proteins are formed by cortical actin-driven activity. Cell 135: 1085-1097.
23. Guo R, Kinzel EC, Li Y, Uppuluri SM, Raman A, Xu X. 2010. Three-dimensional mapping of optical near field of a nanoscale bowtie antenna. Opt Express 18: 4961-4971.
24. He HT, Marguet D. 2011. Detecting Nanodomains in Living Cell Membrane by Fluorescence Correlation Spectroscopy. Annu. Rev. Phys. Chem. 62: 417-436.
25. Hemler ME. 2005. Tetraspanin functions and associated microdomains. Nat. Rev. Mol. Cell Biol. 6: 801-811.
26. Herrmann M, Neuberth N, Wissler J, Perez J, Gradl D. Naber A. 2009. Near-Field Optical Study of Protein Transport Kinetics at a Single Nuclear Pore. Nano Lett. 9: 3330-3336.
27. Hess ST, Girirajan TPK, Mason MD. 2006. Ultra-high resolution imaging by fluorescence photoactivation localization microscopy. Biophys. J. 91: 4258-4272.
28. Hess ST, Gould TJ, Gudheti MV, Maas SA, Mills KD, Zimmerberg J. 2007. Dynamic clustered distribution of hemagglutinin resolved at 40nm in living cell membranes discriminates between raft theories. Proc. Natl. Acad. Sci. USA 104: 17370-17375.
29. Hinterdorfer P, Garcia-Parajo MF, Dûfrene, YF. 2012. Single-molecule imaging of cell surfaces using near-field nanoscopy. Acc. Chem. Res. 45:327-336.
30. Holzmeister P, Acuna GP, Grohmann D, Tinnefeld P. 2013. Breaking the concentration limit of optical single-molecule detection. Chem. Soc. Rev. DOI:10.1039/c3cs60207a.
31. 2+ transmembrane proteins in liquids. Nano Lett. 8: 642-646.
32. Hwang J, Tamm LK, Bohm C, Ramalingam TS, Betzig E, Edidin M. 1995. Nanoscale complexity of phospholipid monolayers investigated by near-field scanning optical microscopy. Science 270: 610-614.
33. Jones SA, Shim SH, He J, Zhuang X. 2011. Fast, three-dimensional super-resolution imaging of live cells. Nat Methods 8:499-508.
34. Kelly CV, Baird BA, Craighead HG. 2011. An array of planar apertures for near-field fluorescence correlation spectroscopy. Biophys. J. 100: L34-36.
35. Kim SA, Heinze KG, Schwille P. 2007. Fluorescence cross-correlation spectroscopy in living cells. Nat. Methods 4: 963-973.
36. Kinkhabwala A, Yu Z, Fan S, Avlasevich Y, Mullen K, Moerner WE. 2009. Large single-molecule fluorescence enhancements produced by a bowtie nanoantenna. Nat. Photonics. 3: 654-657.
37. Kusumi A, Nakada C, Ritchie K, Murase K, Suzuki K, Murakoshi H, Kasai RS, Kondo J, Fujiwara T. 2005. Paradigm shift of the plasma membrane concept from the two-dimensional continuum fluid to the partitioned fluid: high-speed single-molecule tracking of membrane molecules. Annu. Rev. Biophys. Biomol. Struct. 34: 351-378.
38. Lajoie P, Goetz JG, Dennis JW, Nabi IR. 2009. Lattices, rafts, and scaffolds: domain regulation of receptor signaling at the plasma membrane. J. Cell Biol. 185: 381-385.
39. Levene MJ, Korlach J, Turner SW, Foquet M, Craighead HG, Webb WW. 2003. Zero-Mode Waveguides for Single-Molecule Analysis at High Concentrations. Science 299: 682-686.
40. Lingwood D, Simons K. 2010. Lipid rafts as a membrane-organizing principle. Science 327: 46-50.
41. Lohmöller T, Iversen L, Schmidt M, Rhodes C, Tu H-L, Lin W-C, Groves JT. 2012. Single molecule tracking on supported membranes with arrays of optical nanoantennas. Nano Lett. 12: 1717-1721
42. Manes S, Viola A. 2006. Lipid rafts in lymphocyte activation and migration Mol. Membr. Biol. 23: 59-69.
43. Manzo C, van Zanten TS, Garcia-Parajo MF. 2011. Nanoscale fluorescence correlation spectroscopy on intact living cell membranes with NSOM probes. Biophys. J. 100: L8-10.
44. Manzo C, Torreno-Pina JA, Joosten B, Reinieren-Beeren I, Gualda EJ, Loza-Alvarez P, Garcia-Parajo MF, Cambi, A. 2012. The neck region of the C-type lectin DC-SIGN regulates its surface spatiotemporal organization and virus-binding capacity on antigen-presenting cells. J. Biol. Chem. 287: 38946-38955.
45. Mauser N, Hartschuh A. 2014. Tip-enhanced near-field optical microscopy. Chem. Soc. Rev. DOI:10.1039/c3cs60258c
46. Mayor S, Pagano RE. 2007. Pathways of clathrin-independent endocytosis. Nat. Rev. Mol. Cell Biol. 8: 603-612.
47. Mivelle M, Ibrahim IA, Baida F, Burr GW, Nedeljkovic D, Charraut D, Rauch J-Y, Salut R, Grosjean T. 2010. Bowtie nano-aperture as interface between near-fields and a single-mode fiber. Opt. Express 18: 15964-15974.
48. Mivelle M, van Zanten TS, Neumann L, van Hulst NF, Garcia-Parajo MF. 2012. Ultrabright Bowtie Nanoaperture Antenna Probes Studied by Single Molecule Fluorescence. Nano lett. 12: 5972-5978.
49. Miyake T, Tanii T, Sonobe H, Akahori R, Shimamoto N, Ueno T, Funatsu T, Ohdomari I. 2008. Real-time imaging of single molecule fluorescence with a zero-mode waveguide for the analysis of protein-protein interaction. Anal. Chem. 80: 6018-6022.
50. Novotny L, van Hulst NF. 2011. Antennas for light. Nat. Photon. 5: 83-90.
51. Onuta T-D, Waegele M, DuFort CC, Schaich WL, Dragnea B. 2007. Optical enhancement at cups between adjacent nanoapertures. Nano Lett. 7: 557-564.
52. Punj D, Mivelle M, Moparthi SB, van Zanten TS, Rigneault H, van Hulst NF, Garcia-Parajo MF, Wenger J. 2013. A plasmonic 'antenna-in-box' platform for enhanced single-molecule analysis at micromolar concentrations. Nat. Nanotechnol. 8: 512-516.
53. Richards CI, Luong K, Srinivasan R, Turner SW, Dougherty DA, Korlach J, Lester HA. 2012. Live-Cell Imaging of Single Receptor Composition Using Zero-Mode Waveguide Nanostructures. Nano Lett. 12: 3690-3694.
54. Ringemann C, Harke B, von Middendorfff C, Medda R, Honigmann A, Wagner R, Leutenegger M, Schonle A, Hell SW, Eggeling C. 2009. Exploring single-molecule dynamics with fluorescence nanoscopy. New J. Phys. 11: 103054.
55. Rust MJ, Bates M, Zhuang X. 2006. Subdiffraction limit imaging by stochastic optical reconstruction microscopy (STORM). Nat. Methods 3: 793-796.
56. Samiee KT, Moran-Mirabal, JM, Cheung YK, Craighead HG. 2006. Zero mode waveguides for single molecule spectroscopy on lipid membranes. Biophys. J. 90: 3288-3299.
57. Saxton MJ, Jacobson K. 1997. Single-particle tracking: Applications to Membrane Dynamics Annu. Rev. Biophys. Biomol. Struct. 26: 373-399.
58. Shim SH, Xia C, Zhong G, Babcock HP, Vaughan JC, Huang B, Wang X, Xu C, Bi GQ, Zhuang X. 2012. Super-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probes. Proc Natl Acad Sci USA 109:13978-13983.
59. Sieber JJ, Willig KI, Kutzner C, Gerding-Reimers C, Harke B. et al. 2007. Anatomy and Dynamics of a Supramolecular Membrane Protein Cluster. Science 317: 1072-1076.
60. Simons K, Gerl MJ. 2010. Revitalizing membrane rafts: new tools and insights. Nat. Rev. Mol. Cell Biol. 11: 688-699.
61. Taminiau TH, Moerland RJ, Segerink FB, Kuipers L, van Hulst NF. 2007. λ/4 Resonance of an Optical Monopole Antenna Probed by Single Molecule Fluorescence. Nano Lett. 7: 28-33.
62. Uemura S, Aitken CE, Korlach J, Flusberg BA, Turner SW, Puglisi JD. 2010. Real-time tRNA transit on single translating ribosomes at codon resolution. Nature 464: 1012-1017.
63. van Zanten TS, Cambi A, Koopman M, Joosten B, Figdor CG, Garcia-Parajo MF. 2009. Hotspots of GPI-anchored proteins and integrin nanoclusters function as nucleation sites for cell adhesion. Proc. Natl. Acad. Sci USA. 106: 18557-18562.
64. van Zanten TS, Cambi A, Garcia-Parajo MF. 2010a. A nanometer scale optical view on the compartmentalization of cell membranes. Biochim. Biophys. Acta (BBA) - Biomembranes 1798: 777-787.
65. van Zanten, TS, Gomez J, Manzo C, Cambi A, Buceta J, Reigada R, Garcia-Parajo MF. 2010b. Direct mapping of nanoscale compositional connectivity on intact cell membranes. Proc. Natl. Acad. Sci. USA. 107: 15437-15442.
66. van Zanten TS, Lopez-Bosque MJ, Garcia-Parajo MF. 2010c. Imaging Individual Proteins and Nanodomains on Intact Cell Membranes with a Probe-Based Optical Antenna. Small 6: 270-275.
67. Vobornik D, Banks DS, Lu Z, Fradin C, Taylor R, Johnston LJ. 2008. Fluorescence correlation spectroscopy with sub-diffraction-limited resolution using near-field optical probes. Appl. Phys. Lett. 93: 163904-163906.
68. Wang L, Uppuluri SM, Jin EX, Xu XF. 2006. Nanolithography using high transmission nanoscale bowtie apertures. Nano Lett. 6: 361-364.
69. Westphal V, Rizzoli SO, Lauterbach MA, Kamin D, Jahn R, Hell SW. 2008. Video-rate far-field optical nanoscopy dissects synaptic vesicle movement. Science 320: 246-249.
70. Wawrezinieck L, Rigneault H, Marguet D, Lenne, PF. 2005. Fluorescence correlation spectroscopy diffusion law to probe the submicron cell membrane organization. Biophys. J. 89: 4029-4042.
71. Wenger J, Conchonaud F, Dintinger J, Wawrezinieck L, Ebbesen TW, Rigneault H, Marguet D. Lenne PF. 2007. Diffusion analysis within single nanometric apertures reveals the ultrafine cell membrane organization. Biophys. J. 92: 913-919.
72. Wood BR, Asghari-Khiavi M, Bailo E, McNaughton D, Deckert V. 2012. Detection of Nano-Oxidation Sites on the Surface of Hemoglobin Crystals Using Tip-Enhanced Raman Scattering Nano Lett. 12: 1555-1560.
73. Yanez-Mo M, Barreiro O, Gordon-Alonso M, Sala-Valdes M, Sanchez-Madrid F. 2009. Tetraspanin-enriched microdomains: a functional unit in cell plasma membranes. Trends Cell Biol. 19: 434-446.