The peach volatilome modularity is reflected at the genetic and environmental response levels in a QTL mapping population

BMC Plant Biology

Volumn 14, Issue 1, 2014, Pages

  Sánchez, Gerardo ^a,b   Martínez, José ^c   Romeu, José ^d   García, Jesús ^d   Monforte, Antonio J ^a   Badenes, María L ^c   Granell, Antonio ^a  

^a Universitat Politècnica de València   (Spain)

^b INSTITUTO NACIONAL DE TECNOLOGÍA AGROPECUARIA INTA   (Argentina)

^c INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

^d INSTITUTO MURCIANO DE INVESTIGACIÓN Y DESARROLLO AGRARIO Y ALIMENTARIO IMIDA   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

VOLATILE ORGANIC COMPOUND;

BREEDING; CHROMOSOME MAP; CLUSTER ANALYSIS; ENVIRONMENT; FRUIT; GENE REGULATORY NETWORK; GENETIC DATABASE; GENETIC LINKAGE; GENETICS; GENOTYPING TECHNIQUE; METABOLISM; METABOLOME; PRINCIPAL COMPONENT ANALYSIS; PRUNUS; QUANTITATIVE TRAIT LOCUS; SINGLE NUCLEOTIDE POLYMORPHISM;

BREEDING; CHROMOSOME MAPPING; CLUSTER ANALYSIS; DATABASES, GENETIC; ENVIRONMENT; FRUIT; GENE REGULATORY NETWORKS; GENOTYPING TECHNIQUES; LOD SCORE; METABOLOME; POLYMORPHISM, SINGLE NUCLEOTIDE; PRINCIPAL COMPONENT ANALYSIS; PRUNUS; QUANTITATIVE TRAIT LOCI; VOLATILE ORGANIC COMPOUNDS;

EID: 84903193435     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-14-137     Document Type: Article

References (55)

1. Klee HJ, Giovannoni JJ. Genetics and control of tomato fruit ripening and quality attributes. Annu Rev Genet 2011, 45(1):41-59. 10.1146/annurev-genet-110410-132507, 22060040.
2. Koutsos TV, Chatzopoulou PS, Katsiotis ST. Effects of individual selection on agronomical and morphological traits and essential oil of a " Greek basil" population. Euphytica 2009, 170(3):365-370.
3. Olbricht K, Grafe C, Weiss K, Ulrich D. Inheritance of aroma compounds in a model population of Fragaria × ananassa Duch. Plant Breeding 2008, 127(1):87-93.
4. Bruhn CM, Feldman N, Garlitz C, Harwood J, Ivans E, Marshall M, Riley A, Thurber D, Williamson E. Consumer perceptions of quality: apricots, cantaloupes, peaches, pears, strawberries, and tomatoes. Journal of Food Quality 1991, 14(3):187-195.
5. Crisosto CH. Short-term approaches to increase peach fruit consumption. Compact Fruit Tree 2006, 39:11-14.
6. Bruhn CM. Consumer and retailer satisfaction with the quality and size of california peaches and nectarines. Journal of Food Quality 1995, 18(3):241-256.
7. Parker DD, Zilberman D, Moulton K. How quality relates to price in California fresh peaches. Calif Agr 1991, 45(2):14-16.
8. Abbott AG, Arús P, Scorza R. Chapter 4: Genetic engineering and genomics. The Peach: Botany, Production and Uses 2008, 85.
9. Sánchez G, Besada C, Badenes ML, Monforte AJ, Granell A. A non-targeted approach unravels the volatile network in peach fruit. PLoS One 2012, 7(6):e38992. 10.1371/journal.pone.0038992, 3382205, 22761719.
10. Eduardo I, Chietera G, Bassi D, Rossini L, Vecchietti A. Identification of key odor volatile compounds in the essential oil of nine peach accessions. J Sci Food Agric 2010, 90(7):1146-1154. 10.1002/jsfa.3932, 20393995.
11. Horvat RJ, Chapman GW, Robertson JA, Meredith FI, Scorza R, Callahan AM, Morgens P. Comparison of the volatile compounds from several commercial peach cultivars. J Agric Food Chem 1990, 38(1):234-237.
12. Derail C, Hofmann T, Schieberle P. Differences in key odorants of handmade juice of yellow-flesh peaches (Prunus persica L.) induced by the workup procedure. J Agric Food Chem 1999, 47(11):4742-4745. 10.1021/jf990459g, 10552883.
13. Guillot S, Peytavi L, Bureau S, Boulanger R, Lepoutre J-P, Crouzet J, Schorr-Galindo S. Aroma characterization of various apricot varieties using headspace-solid phase microextraction combined with gas chromatography-mass spectrometry and gas chromatography-olfactometry. Food Chem 2006, 96(1):147-155.
14. Greger V, Schieberle P. Characterization of the key aroma compounds in apricots (Prunus armeniaca) by application of the molecular sensory science concept. J Agric Food Chem 2007, 55(13):5221-5228. 10.1021/jf0705015, 17530862.
15. Chapman GW, Horvat RJ, Forbus WR. Physical and chemical changes during the maturation of peaches (cv. Majestic). J Agric Food Chem 1991, 39(5):867-870.
16. Visai C, Vanoli M. Volatile compound production during growth and ripening of peaches and nectarines. Sci Hortic 1997, 70(1):15-24.
17. Zhang B, Shen J-Y, Wei W-W, Xi W-P, Xu C-J, Ferguson I, Chen K. Expression of genes associated with aroma formation derived from the fatty acid pathway during peach fruit ripening. J Agric Food Chem 2010, 58(10):6157-6165. 10.1021/jf100172e, 20415420.
18. Aubert C, Gunata Z, Ambid C, Baumes R. Changes in physicochemical characteristics and volatile constituents of yellow- and white-fleshed nectarines during maturation and artificial ripening. J Agric Food Chem 2003, 51(10):3083-3091. 10.1021/jf026153i, 12720396.
19. Robertson JA, Meredith FI, Horvat RJ, Senter SD. Effect of cold storage and maturity on the physical and chemical characteristics and volatile constituents of peaches (cv. Cresthaven). J Agric Food Chem 1990, 38(3):620-624.
20. Sumitani H, Suekane S, Nakatani A, Tatsuka K. Changes in composition of volatile compounds in high pressure treated peach. J Agric Food Chem 1994, 42(3):785-790.
21. Jia H-J, Araki A, Okamoto G. Influence of fruit bagging on aroma volatiles and skin coloration of 'Hakuho' peach (Prunus persica Batsch). Postharvest Biology and Technology 2005, 35(1):61-68.
22. Eduardo I, Chietera G, Pirona R, Pacheco I, Troggio M, Banchi E, Bassi D, Rossini L, Vecchietti A, Pozzi C. Genetic dissection of aroma volatile compounds from the essential oil of peach fruit: QTL analysis and identification of candidate genes using dense SNP maps. Tree Genetics & Genomes 2013, 9(1):189-204.
23. Pirona R, Vecchietti A, Lazzari B, Caprera A, Malinverni R, Consolandi C, Severgnini M, De Bellis G, Chietera G, Rossini L. Expression profiling of genes involved in the formation of aroma in two peach genotypes. Plant Biol (Stuttg) 2012, 15(3):443-451.
24. Vecchietti A, Lazzari B, Ortugno C, Bianchi F, Malinverni R, Caprera A, Mignani I, Pozzi C. Comparative analysis of expressed sequence tags from tissues in ripening stages of peach (Prunus persica L. Batsch). Tree Genetics & Genomes 2009, 5:377-391.
25. Zhang B, Xi W-P, Wei W-W, Shen J-Y, Ferguson I, Chen K-S. Changes in aroma-related volatiles and gene expression during low temperature storage and subsequent shelf-life of peach fruit. Postharvest Biology and Technology 2011, 60(1):7-16.
26. Xi W-P, Zhang BO, Liang LI, Shen J-Y, Wei W-W, Xu C-J, Allan AC, Ferguson IB, Chen K-S. Postharvest temperature influences volatile lactone production via regulation of acyl-CoA oxidases in peach fruit. Plant Cell Environ 2012, 35(3):534-545. 10.1111/j.1365-3040.2011.02433.x, 21951070.
27. Brandi F, Bar E, Mourgues F, Horvath G, Turcsi E, Giuliano G, Liverani A, Tartarini S, Lewinsohn E, Rosati C. Study of 'Redhaven' peach and its white-fleshed mutant suggests a key role of CCD4 carotenoid dioxygenase in carotenoid and norisoprenoid volatile metabolism. BMC Plant Biol 2011, 11(1):24. 10.1186/1471-2229-11-24, 3045293, 21269483.
28. Sánchez G, Venegas-Caleron M, Salas J, Monforte A, Badenes M, Granell A. An integrative "omics" approach identifies new candidate genes to impact aroma volatiles in peach fruit. BMC Genomics 2013, 14(1):343. 10.1186/1471-2164-14-343, 3685534, 23701715.
29. Verde I, Abbott AG, Scalabrin S, Jung S, Shu S, Marroni F, Zhebentyayeva T, Dettori MT, Grimwood J, Cattonaro F, Zuccolo A, Rossini L, Jenkins J, Vendramin E, Meisel LA, Decroocq V, Sosinski B, Prochnik S, Mitros T, Policriti A, Cipriani G, Dondini L, Ficklin S, Goodstein DM, Xuan P, Del Fabbro C, Aramini V, Copetti D, Gonzalez S, Horner DS, et al. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution. Nat Genet 2013, 45(5):487-494. 10.1038/ng.2586, 23525075.
30. Verde I, Bassil N, Scalabrin S, Gilmore B, Lawley CT, Gasic K, Micheletti D, Rosyara UR, Cattonaro F, Vendramin E, Main D, Aramini V, Blas AL, Mockler TC, Bryant DW, Wilhelm L, Troggio M, Sosinski B, Aranzana MJ, Arús P, Iezzoni A, Morgante M, Peace C. Development and evaluation of a 9K SNP array for peach by internationally coordinated snp detection and validation in breeding germplasm. PLoS One 2012, 7(4):e35668. 10.1371/journal.pone.0035668, 3334984, 22536421.
31. Bicchi C, Maffei M. The plant volatilome: methods of analysis 2012, 289-310. In: High-Throughput Phenotyping in Plants. Springer.
32. Zorrilla-Fontanesi Y, Rambla J-L, Cabeza A, Medina JJ, Sánchez-Sevilla JF, Valpuesta V, Botella MA, Granell A, Amaya I. genetic analysis of strawberry fruit aroma and identification of O-Methyltransferase FaOMT as the locus controlling natural variation in mesifurane content. Plant Physiol 2012, 159(2):851-870. 10.1104/pp.111.188318, 3375946, 22474217.
33. Zanor MI, Rambla JL, Chaib J, Steppa A, Medina A, Granell A, Fernie AR, Causse M. Metabolic characterization of loci affecting sensory attributes in tomato allows an assessment of the influence of the levels of primary metabolites and volatile organic contents. J Exp Bot 2009, 60(7):2139-2154. 10.1093/jxb/erp086, 2682503, 19346240.
34. Bassols Raseira MC, Bonifacio H. Peach breeding program in souther brazil. Acta Hort 2006, 713:93-98.
35. Romeu JF, Monforte AJ, Sánchez G, Granell A, García-Brunton J, Badenes ML, Ríos G. Quantitative trait loci affecting reproductive phenology in peach. BMC Plant Biol 2014, 14(1):52. 10.1186/1471-2229-14-52, 3941940, 24559033.
36. Doyle JJ. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem bull 1987, 19:11-15.
37. Van Ooijen JW. JoinMap 4. Software for the calculation of genetic linkage maps in experimental populations Kyazma BV, Wageningen, Netherlands 2006,
38. Grattapaglia D, Sederoff R. Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 1994, 137(4):1121-1137. 1206059, 7982566.
39. Stam P. Construction of integrated genetic linkage maps by means of a new computer package: Join Map. Plant J 1993, 3(5):739-744.
40. Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1987, 1(2):174-181. 10.1016/0888-7543(87)90010-3, 3692487.
41. Voorrips RE. MapChart: Software for the Graphical Presentation of Linkage Maps and QTLs. J Hered 2002, 93(1):77-78. 10.1093/jhered/93.1.77, 12011185.
42. Tikunov Y, Lommen A, de Vos CHR, Verhoeven HA, Bino RJ, Hall RD, Bovy AG. A novel approach for nontargeted data analysis for metabolomics: large-scale profiling of tomato fruit volatiles. Plant Physiol 2005, 139(3):1125-1137. 10.1104/pp.105.068130, 1283752, 16286451.
43. Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks. Genome Res 2003, 13(11):2498-2504. 10.1101/gr.1239303, 403769, 14597658.
44. Wang S, Basten CJ, Zeng Z-B. Windows QTL Cartographer 2.5. http://statgen.ncsu.edu/qtlcart/WQTLCart.htm 2012, Department of Statistics NCSU, Raleigh NC.
45. Yang J, Hu C, Hu H, Yu R, Xia Z, Ye X, Zhu J. QTLNetwork: mapping and visualizing genetic architecture of complex traits in experimental populations. Bioinformatics 2008, 24(5):721-723. 10.1093/bioinformatics/btm494, 18202029.
46. Martínez-García P, Parfitt D, Ogundiwin E, Fass J, Chan H, Ahmad R, Lurie S, Dandekar A, Gradziel T, Crisosto C. High density SNP mapping and QTL analysis for fruit quality characteristics in peach (Prunus persica L.). Tree Genetics & Genomes 2013, 9(1):19-36.
47. Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, Buckler ES, Mitchell SE. A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One 2011, 6(5):e19379. 10.1371/journal.pone.0019379, 3087801, 21573248.
48. Eduardo I, Pacheco I, Chietera G, Bassi D, Pozzi C, Vecchietti A, Rossini L. QTL analysis of fruit quality traits in two peach intraspecific populations and importance of maturity date pleiotropic effect. Tree Genetics & Genomes 2011, 7(2):323-335.
49. Verde I, Quarta R, Cedrola C, Dettori MT. QTL analysis of agronomic traits in a BC1 peach population. Acta Hort 2002, 592:291-297.
50. Quilot B, Wu BH, Kervella J, Genard M, Foulongne M, Moreau K. QTL analysis of quality traits in an advanced backcross between Prunus persica cultivars and the wild relative species P davidiana. Theoretical and Applied Genetics 2004, 109(4):884-897. 10.1007/s00122-004-1703-z, 15168024.
51. Dirlewanger E, Quero-Garcia J, Le Dantec L, Lambert P, Ruiz D, Dondini L, Illa E, Quilot-Turion B, Audergon JM, Tartarini S, Letourmy P, Arus P. Comparison of the genetic determinism of two key phenological traits, flowering and maturity dates, in three Prunus species: peach, apricot and sweet cherry. Heredity 2012, 109(5):280-292. 10.1038/hdy.2012.38, 3477885, 22828898.
52. Dirlewanger E, Graziano E, Joobeur T, Garriga-Calderé F, Cosson P, Howad W, Arús P. Comparative mapping and marker-assisted selection in Rosaceae fruit crops. Proc Natl Acad Sci U S A 2004, 101(26):9891-9896. 10.1073/pnas.0307937101, 470769, 15159547.
53. Peace CP, Crisosto CH, Gradziel TM. Endopolygalacturonase: a candidate gene for freestone and melting fleshin peach. Molecular Breeding 2005, 16(1):21-31.
54. Okie WR, Bacon T, Bassi D. 6 Fresh Market Cultivar Development. The Peach: Botany, Production and Uses 2008, 139.
55. Degenhardt J, Köllner TG, Gershenzon J. Monoterpene and sesquiterpene synthases and the origin of terpene skeletal diversity in plants. Phytochemistry 2009, 70(15-16):1621-1637.