메뉴 건너뛰기




Volumn 9, Issue 1, 2013, Pages 19-36

High density SNP mapping and QTL analysis for fruit quality characteristics in peach (Prunus persica L.)

Author keywords

"Lovell" sequence; Chilling injury symptoms; Linkage map; Peach v1.0; Prunus; Quantitative trait loci; Single nucleotide polymorphism; SNP effects

Indexed keywords

PRUNUS; PRUNUS PERSICA;

EID: 84872672684     PISSN: 16142942     EISSN: 16142950     Source Type: Journal    
DOI: 10.1007/s11295-012-0522-7     Document Type: Article
Times cited : (88)

References (65)
  • 6
    • 67749088031 scopus 로고    scopus 로고
    • Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay
    • doi:10.1007/s00122-009-1059-5
    • Akhunov E, Nicolet C, Dvorak J (2009) Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay. Theor Appl Genet 119(3): 507-517. doi: 10. 1007/s00122-009-1059-5.
    • (2009) Theor Appl Genet , vol.119 , Issue.3 , pp. 507-517
    • Akhunov, E.1    Nicolet, C.2    Dvorak, J.3
  • 7
    • 0036192314 scopus 로고    scopus 로고
    • Development and variability analysis of microsatellite markers in peach
    • Aranzana MJ, Garcia-Mas J, Carbo J, Arús P (2002) Development and variability analysis of microsatellite markers in peach. Plant Breed 121(1): 87-92.
    • (2002) Plant Breed , vol.121 , Issue.1 , pp. 87-92
    • Aranzana, M.J.1    Garcia-Mas, J.2    Carbo, J.3    Arús, P.4
  • 9
    • 77954685941 scopus 로고    scopus 로고
    • Genetic variation, population structure and linkage disequilibrium in peach commercial varietes
    • Aranzana MJ, Abbassi EK, Howad W, Arús P (2010) Genetic variation, population structure and linkage disequilibrium in peach commercial varietes. BMC Genet 11: 69.
    • (2010) BMC Genet , vol.11 , pp. 69
    • Aranzana, M.J.1    Abbassi, E.K.2    Howad, W.3    Arús, P.4
  • 10
    • 0007837726 scopus 로고
    • The inheritance of certain fruit and foliage characters in the peach
    • Bailey JS, French AP (1949) The inheritance of certain fruit and foliage characters in the peach. Mass Agr Exp Sta Bul 452.
    • (1949) Mass Agr Exp Sta Bul , vol.452
    • Bailey, J.S.1    French, A.P.2
  • 11
    • 77949787771 scopus 로고    scopus 로고
    • A comparison of SNPs and microsatellites as linkage mapping markers: lessons from the zebra finch (Taeniopygia guttata)
    • Ball A, Stapley J, Dawson D, Birkhead T, Burke T, Slate J (2010) A comparison of SNPs and microsatellites as linkage mapping markers: lessons from the zebra finch (Taeniopygia guttata). BMC Genom 11(1): 218.
    • (2010) BMC Genom , vol.11 , Issue.1 , pp. 218
    • Ball, A.1    Stapley, J.2    Dawson, D.3    Birkhead, T.4    Burke, T.5    Slate, J.6
  • 12
    • 68049142349 scopus 로고    scopus 로고
    • Mining for SNPs and SSRs using SNPServer, dbSNP and SSR taxonomy tree
    • doi:10.1007/978-1-59745-251-9_15
    • Batley J, Edwards D (2009) Mining for SNPs and SSRs using SNPServer, dbSNP and SSR taxonomy tree. Meth Mol Biol 537: 303-321. doi: 10. 1007/978-1-59745-251-9_15.
    • (2009) Meth Mol Biol , vol.537 , pp. 303-321
    • Batley, J.1    Edwards, D.2
  • 13
    • 34548267132 scopus 로고    scopus 로고
    • Construction of a genetic linkage map and identification of molecular markers in peach rootstocks for response to peach tree short life syndrome
    • doi:10.1007/S11295-006-0074-9
    • Blenda AV, Verde I, Georgi LL, Reighard GL, Forrest SD, Munoz-Torres M, Baird WV, Abbott AG (2007) Construction of a genetic linkage map and identification of molecular markers in peach rootstocks for response to peach tree short life syndrome. Tree Genet Genomes 3(4): 341-350. doi: 10. 1007/S11295-006-0074-9.
    • (2007) Tree Genet Genomes , vol.3 , Issue.4 , pp. 341-350
    • Blenda, A.V.1    Verde, I.2    Georgi, L.L.3    Reighard, G.L.4    Forrest, S.D.5    Munoz-Torres, M.6    Baird, W.V.7    Abbott, A.G.8
  • 15
    • 0001045929 scopus 로고
    • Targeted mapping and linkage analysis of morphological isozyme, and RAPD markers in peach
    • doi:10.1007/bf00221132
    • Chaparro JX, Werner DJ, O'Malley D, Sederoff RR (1994) Targeted mapping and linkage analysis of morphological isozyme, and RAPD markers in peach. Theor Appl Genet 87(7): 805-815. doi: 10. 1007/bf00221132.
    • (1994) TAG Theor Appl Genet , vol.87 , Issue.7 , pp. 805-815
    • Chaparro, J.X.1    Werner, D.J.2    O'Malley, D.3    Sederoff, R.R.4
  • 16
    • 0035983617 scopus 로고    scopus 로고
    • Using cauliflower to find conserved non-coding regions in Arabidopsis
    • Colinas J, Birnbaum K, Benfey PN (2002) Using cauliflower to find conserved non-coding regions in Arabidopsis. Plant Physiol 129: 451-454.
    • (2002) Plant Physiol , vol.129 , pp. 451-454
    • Colinas, J.1    Birnbaum, K.2    Benfey, P.N.3
  • 18
    • 0032695162 scopus 로고    scopus 로고
    • Susceptibility to chilling injury of peach, nectarine, and plum cultivars grown in California
    • Crisosto CH, Mitchell FG, Ju ZG (1999) Susceptibility to chilling injury of peach, nectarine, and plum cultivars grown in California. HortSci 34(6): 1116-1118.
    • (1999) HortSci , vol.34 , Issue.6 , pp. 1116-1118
    • Crisosto, C.H.1    Mitchell, F.G.2    Ju, Z.G.3
  • 19
    • 52649154517 scopus 로고    scopus 로고
    • Market life update for peach, nectarine, and plum cultivars grown in California
    • Crisosto CH, Crisosto GM, Day KR (2008) Market life update for peach, nectarine, and plum cultivars grown in California. Adv Hortic Sci 22(3): 201-204.
    • (2008) Adv Hortic Sci , vol.22 , Issue.3 , pp. 201-204
    • Crisosto, C.H.1    Crisosto, G.M.2    Day, K.R.3
  • 20
    • 0034761920 scopus 로고    scopus 로고
    • A peach linkage map integrating RFLPs, SSRs, RAPDs, and morphological markers
    • Dettori MT, Quarta R, Verde I (2001) A peach linkage map integrating RFLPs, SSRs, RAPDs, and morphological markers. Genome 44(5): 783-790.
    • (2001) Genome , vol.44 , Issue.5 , pp. 783-790
    • Dettori, M.T.1    Quarta, R.2    Verde, I.3
  • 21
    • 0031773382 scopus 로고    scopus 로고
    • Genetic linkage map of peach [Prunus persica (L.) Batsch] using morphological and molecular markers
    • Dirlewanger E, Pronier V, Parvery C, Rothan C, Guye A, Monet R (1998) Genetic linkage map of peach [Prunus persica (L.) Batsch] using morphological and molecular markers. Theor Appl Genet 97(5-6): 888-895.
    • (1998) Theor Appl Genet , vol.97 , Issue.5-6 , pp. 888-895
    • Dirlewanger, E.1    Pronier, V.2    Parvery, C.3    Rothan, C.4    Guye, A.5    Monet, R.6
  • 24
    • 33751266466 scopus 로고    scopus 로고
    • Development of a second-generation genetic linkage map for peach [Prunus persica (L.) Batsch] and characterization of morphological traits affecting flower and fruit
    • doi:10.1007/S11295-006-0053-1
    • Dirlewanger E, Cosson P, Boudehri K, Renaud C, Capdeville G, Tauzin Y, Laigret F, Moing A (2007) Development of a second-generation genetic linkage map for peach [Prunus persica (L.) Batsch] and characterization of morphological traits affecting flower and fruit. Tree Genet Genomes 3(1): 1-13. doi: 10. 1007/S11295-006-0053-1.
    • (2007) Tree Genet Genomes , vol.3 , Issue.1 , pp. 1-13
    • Dirlewanger, E.1    Cosson, P.2    Boudehri, K.3    Renaud, C.4    Capdeville, G.5    Tauzin, Y.6    Laigret, F.7    Moing, A.8
  • 25
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small quantities of fresh leaf tissue
    • Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bullet 19: 11-15.
    • (1987) Phytochem Bullet , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 27
    • 0001534998 scopus 로고
    • A genetic map of Prunus based on an interspecific cross between peach and almond
    • Foolad MR, Arulsekar S, Becerra V, Bliss FA (1995) A genetic map of Prunus based on an interspecific cross between peach and almond. Theor Appl Genet 91(2): 262-269.
    • (1995) Theor Appl Genet , vol.91 , Issue.2 , pp. 262-269
    • Foolad, M.R.1    Arulsekar, S.2    Becerra, V.3    Bliss, F.A.4
  • 28
    • 0043210396 scopus 로고    scopus 로고
    • The potential of Prunus davidiana for introgression into peach [Prunus persica (L.) Batsch] assessed by comparative mapping
    • doi:10.1007/S00122-003-1238-8
    • Foulongne M, Pascal T, Arús P, Kervella J (2003) The potential of Prunus davidiana for introgression into peach [Prunus persica (L.) Batsch] assessed by comparative mapping. Theor Appl Genet 107(2): 227-238. doi: 10. 1007/S00122-003-1238-8.
    • (2003) Theor Appl Genet , vol.107 , Issue.2 , pp. 227-238
    • Foulongne, M.1    Pascal, T.2    Arús, P.3    Kervella, J.4
  • 29
    • 0028136089 scopus 로고
    • Genetic-linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross-mapping strategy and RAPD markers
    • Grattapaglia D, Sederoff R (1994) Genetic-linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross-mapping strategy and RAPD markers. Genetics 137(4): 1121-1137.
    • (1994) Genetics , vol.137 , Issue.4 , pp. 1121-1137
    • Grattapaglia, D.1    Sederoff, R.2
  • 30
    • 79953839352 scopus 로고    scopus 로고
    • High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species
    • doi: 10. 1186/1471-2229-11-65
    • Grattapaglia D, Silva OB, Kirst M, de Lima BM, Faria DA, Pappas GJ (2011) High-throughput SNP genotyping in the highly heterozygous genome of Eucalyptus: assay success, polymorphism and transferability across species. BMC Plant Biol 11: 65. doi: 10. 1186/1471-2229-11-65.
    • (2011) BMC Plant Biol , vol.11 , pp. 65
    • Grattapaglia, D.1    Silva, O.B.2    Kirst, M.3    de Lima, B.M.4    Faria, D.A.5    Pappas, G.J.6
  • 36
    • 0000732266 scopus 로고
    • The estimation of map distances from recombination values
    • Kosambi DD (1943) The estimation of map distances from recombination values. Ann Eugenic 12: 172-175.
    • (1943) Ann Eugenic , vol.12 , pp. 172-175
    • Kosambi, D.D.1
  • 38
    • 0031854235 scopus 로고    scopus 로고
    • Construction of a genetic linkage map and identification of AFLP markers for resistance to root-knot nematodes in peach rootstocks
    • Lu ZX, Sosinski B, Reighard GL, Baird WV, Abbott AG (1998) Construction of a genetic linkage map and identification of AFLP markers for resistance to root-knot nematodes in peach rootstocks. Genome 41(2): 199-207.
    • (1998) Genome , vol.41 , Issue.2 , pp. 199-207
    • Lu, Z.X.1    Sosinski, B.2    Reighard, G.L.3    Baird, W.V.4    Abbott, A.G.5
  • 39
    • 28844435871 scopus 로고    scopus 로고
    • Chilling injury in peach and nectarine
    • doi:10.1016/J.Postharvbio.2005.04.012
    • Lurie S, Crisosto CH (2005) Chilling injury in peach and nectarine. Postharvest Biol Technol 37(3): 195-208. doi: 10. 1016/J. Postharvbio. 2005. 04. 012.
    • (2005) Postharvest Biol Technol , vol.37 , Issue.3 , pp. 195-208
    • Lurie, S.1    Crisosto, C.H.2
  • 43
    • 53249109367 scopus 로고    scopus 로고
    • Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit
    • doi:10.1007/s11103-008-9378-5
    • Ogundiwin EA, Marti C, Forment J, Pons C, Granell A, Gradziel TM, Peace CP, Crisosto CH (2008) Development of ChillPeach genomic tools and identification of cold-responsive genes in peach fruit. Plant Mol Biol 68(4-5): 379-397. doi: 10. 1007/s11103-008-9378-5.
    • (2008) Plant Mol Biol , vol.68 , Issue.4-5 , pp. 379-397
    • Ogundiwin, E.A.1    Marti, C.2    Forment, J.3    Pons, C.4    Granell, A.5    Gradziel, T.M.6    Peace, C.P.7    Crisosto, C.H.8
  • 45
    • 77954734628 scopus 로고    scopus 로고
    • Genomics approaches to crop improvement in the Rosaceae
    • In: Kevin M. Folta, Gardiner SE (eds)
    • Peace C, Norelli JL (2009) Genomics approaches to crop improvement in the Rosaceae. In: Kevin M. Folta, Gardiner SE (eds) Genetics and genomics of Rosaceae. pp 19-53.
    • (2009) Genetics and genomics of Rosaceae , pp. 19-53
    • Peace, C.1    Norelli, J.L.2
  • 47
    • 24744439649 scopus 로고    scopus 로고
    • Endopolygalacturonase: a candidate gene for freestone and melting flesh in peach
    • doi:10.1007/S11032-005-0828-3
    • Peace CP, Crisosto CH, Gradziel TM (2005) Endopolygalacturonase: a candidate gene for freestone and melting flesh in peach. Mol Breeding 16(1): 21-31. doi: 10. 1007/S11032-005-0828-3.
    • (2005) Mol Breeding , vol.16 , Issue.1 , pp. 21-31
    • Peace, C.P.1    Crisosto, C.H.2    Gradziel, T.M.3
  • 48
    • 0002009706 scopus 로고    scopus 로고
    • Genetic analysis of agronomic traits and genetic linkage mapping in a BC1 peach population using RFLPs and RAPDs
    • Quarta R, Dettori MT, Verde I, Gentile A, Broda Z (1998) Genetic analysis of agronomic traits and genetic linkage mapping in a BC1 peach population using RFLPs and RAPDs. Acta Horticulturae 465: 51-59.
    • (1998) Acta Horticulturae , vol.465 , pp. 51-59
    • Quarta, R.1    Dettori, M.T.2    Verde, I.3    Gentile, A.4    Broda, Z.5
  • 53
    • 0033776717 scopus 로고    scopus 로고
    • A genetic linkage map constructed by using an intraspecific cross between peach cultivars
    • Shimada T, Yamamoto T, Hayama H, Yamaguchi M, Hayashi T (2000) A genetic linkage map constructed by using an intraspecific cross between peach cultivars. J Japan Soc Hort Sci 69: 536-542.
    • (2000) J Japan Soc Hort Sci , vol.69 , pp. 536-542
    • Shimada, T.1    Yamamoto, T.2    Hayama, H.3    Yamaguchi, M.4    Hayashi, T.5
  • 55
    • 7344254829 scopus 로고
    • Construction of integrated genetic-linkage maps by means of a new computer package-Joinmap
    • Stam P (1993) Construction of integrated genetic-linkage maps by means of a new computer package-Joinmap. Plant J 3(5): 739-744.
    • (1993) Plant J , vol.3 , Issue.5 , pp. 739-744
    • Stam, P.1
  • 60
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: software for the graphical presentation of linkage maps and QTLs
    • Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93(1): 77-78.
    • (2002) J Hered , vol.93 , Issue.1 , pp. 77-78
    • Voorrips, R.E.1
  • 61
    • 3142739466 scopus 로고    scopus 로고
    • Detecting selection in noncoding regions of nucleotide sequences
    • Wong WS, Nielsen R (2004) Detecting selection in noncoding regions of nucleotide sequences. Genetics 167(2): 949-958.
    • (2004) Genetics , vol.167 , Issue.2 , pp. 949-958
    • Wong, W.S.1    Nielsen, R.2
  • 62
    • 0035684445 scopus 로고    scopus 로고
    • Characterization of morphological traits based on a genetic linkage map in peach
    • doi:10.1270/jsbbs.51.271
    • Yamamoto T, Shimada T, Imai T, Yaegaki H, Haji T, Matsuta N, Yamaguchi M, Hayashi T (2001) Characterization of morphological traits based on a genetic linkage map in peach. Breed Sci 51(4): 271-278. doi: 10. 1270/jsbbs. 51. 271.
    • (2001) Breed Sci , vol.51 , Issue.4 , pp. 271-278
    • Yamamoto, T.1    Shimada, T.2    Imai, T.3    Yaegaki, H.4    Haji, T.5    Matsuta, N.6    Yamaguchi, M.7    Hayashi, T.8
  • 63
    • 20444376553 scopus 로고    scopus 로고
    • An integrated genetic linkage map of peach by SSR, STS, AFLP and RAPD
    • Yamamoto T, Yamaguchi M, Hayashi T (2005) An integrated genetic linkage map of peach by SSR, STS, AFLP and RAPD. J Japanese Soc Horticultural Sci 74(3): 204-213.
    • (2005) J Japanese Soc Horticultural Sci , vol.74 , Issue.3 , pp. 204-213
    • Yamamoto, T.1    Yamaguchi, M.2    Hayashi, T.3
  • 64
    • 79952299301 scopus 로고    scopus 로고
    • Gains in QTL detection using an ultra-high density snp map based on population sequencing relative to traditional RFLP/SSR markers
    • Yu H, Xie W, Wang J, Xing Y, Xu C, Li X, Xiao J, Zhang Q (2011) Gains in QTL detection using an ultra-high density snp map based on population sequencing relative to traditional RFLP/SSR markers. PLoS ONE 6(3): e17595. doi: 10. 1371/journal. pone. 0017595.
    • (2011) PLoS ONE , vol.6 , Issue.3
    • Yu, H.1    Xie, W.2    Wang, J.3    Xing, Y.4    Xu, C.5    Li, X.6    Xiao, J.7    Zhang, Q.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.